Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 4.4e-264 914.1 456 100.0
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 2.8e-234 815.1 456 87.7
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 1.0e-228 796.6 447 88.4
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 4.4e-216 754.6 452 81.9
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 7.5e-216 753.8 449 81.7
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.4e-214 748.8 452 80.8
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 4.6e-213 744.6 470 78.5
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 5.1e-212 741.1 452 79.9
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.9e-211 739.2 453 80.1
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 3.3e-211 738.4 451 80.5
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 4.3e-211 738.0 452 80.8
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 4.3e-211 738.0 450 79.8
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 7.3e-211 737.3 458 79.0
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 1.6e-210 736.1 483 75.8
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 2.1e-210 735.7 449 79.3
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 6.2e-210 734.2 452 79.0
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 8.1e-210 733.8 450 79.1
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 1.1e-209 733.4 452 79.2
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 1.4e-209 733.0 452 79.2
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 3.1e-209 731.9 451 79.4
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 8.9e-209 730.3 451 78.7
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 1.2e-208 729.9 477 75.3
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 5.8e-208 727.6 449 77.7
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 7.6e-208 727.2 455 78.7
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 1.7e-207 726.1 454 79.3
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 4.9e-207 724.5 447 80.3
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 1.4e-206 723.0 449 78.0
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 1.4e-206 723.0 434 80.2
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 1.4e-206 723.0 452 77.9
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 4.1e-206 721.5 416 83.4
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 7.1e-206 720.7 476 77.3
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 7.1e-206 720.7 455 77.8
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 7.1e-206 720.7 466 79.0
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 3.5e-205 718.4 453 78.4
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 1.3e-204 716.5 453 76.8
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 1.3e-204 716.5 488 74.0
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 1.7e-204 716.1 455 76.0
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 2.3e-204 715.7 452 77.7
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 3.9e-204 714.9 455 76.3
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 5.6e-203 711.1 452 77.4
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 1.2e-202 709.9 454 76.4
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 4.7e-202 708.0 450 76.7
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 1.4e-201 706.4 453 76.4
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.8e-201 706.1 434 78.3
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 2.4e-201 705.7 434 78.3
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 2.4e-201 705.7 463 74.5
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 4.0e-201 704.9 433 78.1
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 5.2e-201 704.5 457 75.7
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 6.9e-201 704.1 452 74.8
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 6.9e-201 704.1 455 74.9
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 6.9e-201 704.1 454 76.0
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 1.5e-200 703.0 454 75.6
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 1.5e-200 703.0 447 74.9
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 1.5e-200 703.0 432 79.9
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 2.0e-200 702.6 455 74.9
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 4.4e-200 701.4 452 74.8
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 7.6e-200 700.7 434 77.9
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 5.4e-198 694.5 449 73.5
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 1.2e-197 693.3 447 73.6
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 1.6e-197 693.0 452 73.0
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 3.5e-197 691.8 458 73.8
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 7.8e-197 690.6 449 76.6
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 7.8e-197 690.6 449 73.9
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 2.3e-196 689.1 456 73.9
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 5.1e-196 688.0 456 73.7
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 6.6e-196 687.6 454 74.9
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 2.5e-195 685.6 454 75.1
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 3.3e-195 685.3 449 75.3
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 3.3e-195 685.3 449 72.4
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 9.6e-195 683.7 463 71.5
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 3.6e-194 681.8 450 73.1
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 6.2e-194 681.0 450 71.6
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 5.3e-193 677.9 449 72.6
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 6.9e-193 677.6 428 74.3
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 1.5e-192 676.4 451 71.8
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 1.5e-192 676.4 451 72.1
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 2.2e-191 672.5 449 72.4
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 2.9e-191 672.2 449 71.0
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 3.8e-191 671.8 450 73.8
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 8.4e-191 670.6 468 69.2
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 1.1e-190 670.2 447 72.9
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 9.3e-190 667.2 449 70.4
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 1.2e-189 666.8 460 70.4
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 2.1e-189 666.0 449 70.2
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 7.9e-189 664.1 454 74.0
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 1.0e-188 663.7 469 68.9
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 1.3e-188 663.3 459 69.7
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 1.8e-188 662.9 480 67.9
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 6.7e-188 661.0 408 78.9
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 2.5e-187 659.1 452 73.5
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 7.4e-187 657.5 481 69.9
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 9.6e-187 657.1 506 67.6
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 1.2e-181 640.2 443 70.2
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 7.9e-181 637.5 460 66.5
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 3.9e-180 635.2 414 74.4
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 7.1e-174 614.4 413 71.7
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 1.3e-172 610.1 411 72.7
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 1.9e-171 606.3 455 65.5
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 4.3e-171 605.1 388 73.7
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.1e-169 600.5 466 66.5
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 1.5e-168 596.7 449 67.7
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 3.4e-168 595.5 363 79.1
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 3.6e-165 585.5 449 65.9
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 1.6e-157 560.1 426 62.7
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 8.8e-156 554.3 322 82.6
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 1.1e-155 553.9 456 58.8
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 9.1e-153 544.3 437 59.0
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 1.4e-148 530.4 426 61.0
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 2.8e-146 522.7 429 57.6
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 5.2e-132 475.3 276 81.2
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 5.7e-131 471.9 457 57.3
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.5e-118 429.9 449 54.3
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 7.0e-113 411.8 434 46.1
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 4.6e-104 382.5 424 47.4
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 4.1e-97 359.4 370 54.1
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 7.1e-97 358.6 315 60.0
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 4.9e-90 335.9 182 87.9
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 7.3e-86 322.0 478 37.9
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 3.4e-59 233.4 188 65.4
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 2.1e-56 224.2 337 41.2
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 1.0e-55 221.9 108 93.5
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 4.8e-53 213.0 372 39.0
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 1.0e-42 178.7 390 34.4
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 1.9e-41 174.5 126 71.4
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 2.1e-40 171.0 124 71.0
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 2.6e-38 164.1 137 63.5
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 3.7e-29 133.7 85 65.9
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 3.7e-29 133.7 102 64.7
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 9.1e-28 129.0 126 52.4
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 6.1e-24 116.3 83 68.7
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 7.5e-22 109.4 67 70.1
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 7.5e-22 109.4 218 30.7
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 2.4e-20 104.4 74 66.2
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 8.5e-18 95.9 120 50.0
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 4.2e-17 93.6 101 53.5
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 5.5e-17 93.2 66 66.7
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 9.4e-17 92.4 70 60.0
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 5.7e-14 83.2 56 75.0


User provided reference genes

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