Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1939.5 993 100.0
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1555.8 993 80.1
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1476.5 994 74.9
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1469.5 994 74.6
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1464.1 993 75.4
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1463.4 981 75.5
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1463.4 981 75.5
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1461.4 993 74.1
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1460.3 972 77.4
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1458.4 982 74.7
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1449.9 982 74.5
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1439.5 996 73.9
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1436.8 993 75.1
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1436.0 993 73.1
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1432.2 990 73.3
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1431.0 963 76.3
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1429.8 994 73.9
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1421.4 1077 68.8
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1417.5 993 73.0
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1410.2 993 71.5
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1404.8 1018 72.6
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1404.4 993 71.9
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1403.7 995 72.9
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1403.3 993 73.3
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1402.5 994 71.8
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1399.4 993 73.1
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1398.6 993 71.7
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1390.6 993 71.7
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1389.4 993 71.4
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1387.9 993 71.8
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1385.2 994 70.8
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1381.7 971 73.1
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1378.6 993 70.4
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1376.3 995 70.9
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1374.4 988 71.6
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1374.4 993 71.4
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1369.0 993 69.8
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1368.2 993 71.4
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1365.5 995 70.9
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1363.2 993 70.5
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1362.4 993 71.2
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1362.1 989 70.6
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1361.7 993 69.7
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1359.4 996 69.5
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1357.8 993 70.3
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1355.9 993 69.4
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1355.5 993 70.0
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1355.1 993 70.6
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1354.3 993 68.8
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1352.0 995 69.8
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1349.7 995 69.3
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1347.0 993 68.9
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1343.6 993 68.9
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1340.5 1006 69.1
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1340.1 994 69.4
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1338.9 994 69.4
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1335.5 993 68.2
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1334.3 964 70.4
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1333.2 994 69.5
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1333.2 993 68.1
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1332.4 993 68.4
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1331.6 993 68.8
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1331.6 994 68.5
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1327.8 994 68.5
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1325.8 1000 69.2
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1325.5 993 67.4
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1324.3 993 67.8
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1323.5 994 68.0
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1322.8 965 70.5
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1320.4 994 67.5
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1319.3 994 69.2
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1317.8 993 67.4
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1311.2 993 67.7
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1310.0 995 67.6
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1307.4 993 67.1
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1306.2 993 68.6
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1305.8 993 66.8
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1301.2 900 73.3
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1301.2 993 66.0
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1278.8 996 67.6
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1278.8 993 66.0
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1278.5 996 65.4
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1274.6 988 66.0
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1274.2 993 65.7
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1274.2 993 66.2
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1268.1 863 76.4
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1267.3 993 66.5
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1250.7 996 64.2
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1249.6 994 64.5
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1248.4 993 64.6
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1246.5 994 64.3
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1246.5 1005 64.2
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1239.9 1026 62.6
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1238.4 994 64.3
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1238.4 921 68.4
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1237.6 993 64.7
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1221.1 915 68.6
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1219.9 999 63.7
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1209.1 964 65.7
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1178.3 915 68.1
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1169.1 972 61.5
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1114.4 994 57.5
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1075.8 1001 58.3
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 7.5e-293 1010.7 915 60.2
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 1.9e-280 969.5 995 51.9
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 4.2e-280 968.4 724 68.6
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 1.8e-275 953.0 843 60.6
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 1.1e-264 917.1 998 48.6
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 6.8e-262 907.9 1002 48.9
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 2.6e-261 906.0 1004 49.7
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 2.9e-260 902.5 1004 49.4
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.2e-259 899.0 612 73.9
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 5.0e-257 891.7 1004 49.0
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.1e-255 886.3 599 74.3
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 3.3e-240 835.9 986 45.2
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 1.4e-235 820.5 609 67.8
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 1.3e-233 813.9 744 57.8
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 3.2e-227 792.7 803 51.7
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 1.8e-206 723.8 1083 38.8
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 5.0e-196 689.1 916 42.4
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 1.3e-167 594.7 429 72.0
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 9.9e-136 488.8 357 68.3
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 6.2e-130 469.5 305 76.7
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 2.4e-129 467.6 313 73.5
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 1.1e-115 422.2 1192 28.3
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.2e-88 332.4 266 63.9
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.2e-88 332.4 266 63.9
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 2.0e-75 288.5 1074 26.3
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 5.9e-48 197.2 239 45.2
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 1.5e-46 192.6 929 23.5
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 1.2e-35 156.4 109 70.6
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 5.6e-30 137.5 122 60.7
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 8.3e-26 123.6 146 45.9
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 6.2e-21 107.5 145 43.4
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 6.8e-20 104.0 86 60.5
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.6e-16 92.8 64 73.4
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 4.3e-06 58.2 45 64.4
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 4.3e-06 58.2 45 64.4


User provided reference genes

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