Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4677 Avicennia marina HOM05D007259 ORTHO05D009158 4.0e-104 381.3 180 100.0
Peaxi162Scf00207g00430 Petunia axillaris HOM05D007259 ORTHO05D009158 5.6e-82 307.8 165 81.2
SGA_v2.0_scaffold26G11300 Striga asiatica HOM05D007259 ORTHO05D009158 4.0e-80 301.6 163 84.0
Sopen06g025720 Solanum pennellii HOM05D007259 ORTHO05D009158 5.3e-80 301.2 165 80.6
Oeu060130.1 Olea europaea HOM05D007259 ORTHO05D009158 2.0e-79 299.3 165 82.4
Solyc06g068470.3 Solanum lycopersicum HOM05D007259 ORTHO05D009158 3.4e-79 298.5 165 79.4
PGSC0003DMG400028490 Solanum tuberosum HOM05D007259 ORTHO05D009158 3.8e-78 295.0 166 77.7
CAN.G1932.2 Capsicum annuum HOM05D007259 ORTHO05D009158 1.4e-77 293.1 165 78.2
Actinidia36875 Actinidia chinensis HOM05D007259 ORTHO05D009158 1.9e-77 292.7 163 81.0
Cc04_g05120 Coffea canephora HOM05D007259 ORTHO05D009158 3.2e-77 292.0 165 79.4
HanXRQChr05g0153761 Helianthus annuus HOM05D007259 ORTHO05D009158 3.2e-77 292.0 165 78.2
SalBow6G4962 Salvia bowleyana HOM05D007259 ORTHO05D009158 5.5e-77 291.2 164 79.9
Ah.01g006970 Amaranthus hybridus HOM05D007259 ORTHO05D009158 9.3e-77 290.4 162 80.2
CSS0004525 Camellia sinensis var. sinensis HOM05D007259 ORTHO05D009158 9.3e-77 290.4 163 78.5
Lsat_1_v5_gn_5_8261 Lactuca sativa HOM05D007259 ORTHO05D009158 2.1e-76 289.3 165 78.8
Dinv21412 Davidia involucrata HOM05D007259 ORTHO05D009158 5.1e-75 284.6 165 78.2
Lj5A81T88 Lonicera japonica HOM05D007259 ORTHO05D009158 1.1e-74 283.5 165 75.2
Rhsim08G0205600 Rhododendron simsii HOM05D007259 ORTHO05D009158 1.5e-74 283.1 163 79.1
Migut.D01126 Erythranthe guttata HOM05D007259 ORTHO05D009158 1.9e-74 282.7 163 79.8
Ciclev10026584m.g Citrus clementina HOM05D007259 ORTHO05D009158 2.5e-74 282.3 176 71.6
Potri.001G044200 Populus trichocarpa HOM05D007259 ORTHO05D009158 4.3e-74 281.6 165 77.0
Medtr4g007095 Medicago truncatula HOM05D007259 ORTHO05D009158 5.7e-74 281.2 165 76.4
RcHm_v2.0_Chr2g0132951 Rosa chinensis HOM05D007259 ORTHO05D009158 5.7e-74 281.2 165 77.0
PSO170G4635 Papaver somniferum HOM05D007259 ORTHO05D009158 7.4e-74 280.8 166 77.1
Eucgr.F03958 Eucalyptus grandis HOM05D007259 ORTHO05D009158 9.6e-74 280.4 165 77.6
VMungo0331G0163 Vigna mungo HOM05D007259 ORTHO05D009158 1.6e-73 279.6 163 77.9
PSO017G0751 Papaver somniferum HOM05D007259 ORTHO05D009158 2.1e-73 279.3 166 77.1
Sabra01G0030500 Salix brachista HOM05D007259 ORTHO05D009158 2.1e-73 279.3 165 76.4
FvH4_6g28630 Fragaria vesca HOM05D007259 ORTHO05D009158 2.8e-73 278.9 165 76.4
FAN14G4954 Fragaria x ananassa HOM05D007259 ORTHO05D009158 2.8e-73 278.9 165 76.4
CANSAT56G1631 Cannabis sativa HOM05D007259 ORTHO05D009158 3.7e-73 278.5 165 78.2
Medtr4g007090 Medicago truncatula HOM05D007259 ORTHO05D009158 3.7e-73 278.5 165 75.8
PGR102G1952 Punica granatum HOM05D007259 ORTHO05D009158 3.7e-73 278.5 165 77.0
FAN05G5272 Fragaria x ananassa HOM05D007259 ORTHO05D009158 4.8e-73 278.1 165 75.8
Hund00433 Selenicereus undatus HOM05D007259 ORTHO05D009158 4.8e-73 278.1 165 77.0
Gohir.D06G118700 Gossypium hirsutum HOM05D007259 ORTHO05D009158 8.2e-73 277.3 165 77.0
Lj3g0012869 Lotus japonicus HOM05D007259 ORTHO05D009158 8.2e-73 277.3 163 76.7
Manes.04G102300 Manihot esculenta HOM05D007259 ORTHO05D009158 8.2e-73 277.3 165 77.0
Gorai.010G136500 Gossypium raimondii HOM05D007259 ORTHO05D009158 1.4e-72 276.6 165 77.0
Lalb_Chr01g0012071 Lupinus albus HOM05D007259 ORTHO05D009158 1.8e-72 276.2 163 77.9
TWI75G0585 Tripterygium wilfordii HOM05D007259 ORTHO05D009158 3.1e-72 275.4 165 76.4
Duzib235G0063 Durio zibethinus HOM05D007259 ORTHO05D009158 5.3e-72 274.6 165 77.0
TPR.G23079 Trifolium pratense HOM05D007259 ORTHO05D009158 6.9e-72 274.2 165 74.5
Gohir.A06G114200 Gossypium hirsutum HOM05D007259 ORTHO05D009158 9.0e-72 273.9 165 75.8
QL05p036089 Quercus lobata HOM05D007259 ORTHO05D009158 9.0e-72 273.9 166 78.3
TPR.G23090 Trifolium pratense HOM05D007259 ORTHO05D009158 9.0e-72 273.9 165 75.2
FAN09G1653 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.2e-71 273.5 164 75.6
Glyma.08G218900 Glycine max HOM05D007259 ORTHO05D009158 7.6e-71 270.8 166 75.3
EL10Ac9g22206 Beta vulgaris HOM05D007259 ORTHO05D009158 1.0e-70 270.4 166 73.5
ClCG10G012930 Citrullus lanatus HOM05D007259 ORTHO05D009158 1.0e-70 270.4 165 74.5
Sc12g0008330 Simmondsia chinensis HOM05D007259 ORTHO05D009158 1.7e-70 269.6 161 73.3
BcaC03g15926 Brassica carinata HOM05D007259 ORTHO05D009158 2.9e-70 268.9 165 74.5
BolC2t09700H Brassica oleracea HOM05D007259 ORTHO05D009158 2.9e-70 268.9 165 74.5
Carub.0002s2668 Capsella rubella HOM05D007259 ORTHO05D009158 2.9e-70 268.9 165 75.2
Cfa001880 Carpinus fangiana HOM05D007259 ORTHO05D009158 2.9e-70 268.9 165 75.2
Sp5g34900 Schrenkiella parvula HOM05D007259 ORTHO05D009158 3.8e-70 268.5 166 74.1
C02p36870 Brassica napus HOM05D007259 ORTHO05D009158 6.5e-70 267.7 165 73.9
Nitab4.5_0008962g0030 Nicotiana tabacum HOM05D007259 ORTHO05D009158 8.5e-70 267.3 144 80.6
Prupe.3G098300 Prunus persica HOM05D007259 ORTHO05D009158 8.5e-70 267.3 165 75.8
GSVIVG01015956001 Vitis vinifera HOM05D007259 ORTHO05D009158 8.5e-70 267.3 165 72.7
BcaB05g25221 Brassica carinata HOM05D007259 ORTHO05D009158 1.9e-69 266.2 165 73.9
A02p23100 Brassica napus HOM05D007259 ORTHO05D009158 2.5e-69 265.8 165 73.9
BraA02t07308Z Brassica rapa HOM05D007259 ORTHO05D009158 2.5e-69 265.8 165 73.9
Thecc.06G041800 Theobroma cacao HOM05D007259 ORTHO05D009158 2.5e-69 265.8 165 74.5
Thhalv10019243m.g Eutrema salsugineum HOM05D007259 ORTHO05D009158 3.2e-69 265.4 165 73.9
Psat7g260280 Pisum sativum HOM05D007259 ORTHO05D009158 3.2e-69 265.4 158 76.6
Atru.chr10.2413 Acer truncatum HOM05D007259 ORTHO05D009158 5.5e-69 264.6 165 72.1
CsaV3_3G032790 Cucumis sativus L. HOM05D007259 ORTHO05D009158 7.2e-69 264.2 165 72.7
AT1G80860 Arabidopsis thaliana HOM05D007259 ORTHO05D009158 9.3e-69 263.8 165 73.9
Phvul.010G161400 Phaseolus vulgaris HOM05D007259 ORTHO05D009158 9.3e-69 263.8 163 74.8
unitig_60.g25615 Utricularia gibba HOM05D007259 ORTHO05D009158 9.3e-69 263.8 202 63.9
THA.LOC104812409 Tarenaya hassleriana HOM05D007259 ORTHO05D009158 4.6e-68 261.5 165 73.3
Aa31LG4G1140 Aethionema arabicum HOM05D007259 ORTHO05D009158 7.9e-68 260.8 164 72.0
AL2G40530 Arabidopsis lyrata HOM05D007259 ORTHO05D009158 1.0e-67 260.4 165 73.9
CARHR073610 Cardamine hirsuta HOM05D007259 ORTHO05D009158 6.7e-67 257.7 165 74.5
Nn8g39898 Nelumbo nucifera HOM05D007259 ORTHO05D009158 5.7e-66 254.6 165 68.5
Sed0006537 Sechium edule HOM05D007259 ORTHO05D009158 5.7e-66 254.6 165 69.7
CiPaw.01G254600 Carya illinoinensis HOM05D007259 ORTHO05D009158 1.8e-64 249.6 165 72.1
MBI15_g08512_MAGBIO Magnolia biondii HOM05D007259 ORTHO05D009158 9.1e-64 247.3 162 67.9
ECA246G0776 Erigeron canadensis HOM05D007259 ORTHO05D009158 3.0e-59 232.3 126 84.1
BcaB05g25224 Brassica carinata HOM05D007259 ORTHO05D009158 1.1e-58 230.3 164 67.7
Os02g0612100 Oryza sativa ssp. japonica HOM05D007259 ORTHO05D009158 1.1e-58 230.3 164 65.2
Zm00001eb184520 Zea mays HOM05D007259 ORTHO05D009158 6.3e-57 224.6 161 65.2
Haze_16667 Corylus avellana HOM05D007259 ORTHO05D009158 6.5e-54 214.5 262 45.8
HPP92_010735 Vanilla planifolia HOM05D007259 ORTHO05D009158 2.5e-53 212.6 154 64.3
Potri.003G182400 Populus trichocarpa HOM05D007259 ORTHO05D009158 3.2e-53 212.2 117 82.1
CDE12G0386 Ceratophyllum demersum HOM05D007259 ORTHO05D009158 5.5e-53 211.5 141 67.4
DCAR_021369 Daucus carota HOM05D007259 ORTHO05D009158 3.0e-51 205.7 109 86.2
SEGI_39537 Sequoiadendron giganteum HOM05D007259 ORTHO05D009158 7.4e-50 201.1 156 59.6
SMO141G0127 Selaginella moellendorffii HOM05D007259 ORTHO05D009158 1.2e-47 193.7 149 58.4
AagrBONN_evm.TU.Sc2ySwM_117.1157 Anthoceros agrestis HOM05D007259 ORTHO05D009158 3.8e-46 188.7 163 52.8
Pp3c6_3720 Physcomitrium patens HOM05D007259 ORTHO05D009158 1.5e-42 176.8 163 52.8
Nitab4.5_0000886g0050 Nicotiana tabacum HOM05D007259 ORTHO05D009158 6.1e-36 154.8 91 71.4
Glyma.07G022900 Glycine max HOM05D007259 ORTHO05D009158 1.4e-35 153.7 84 81.0
vmacro19057 Vaccinium macrocarpon HOM05D007259 ORTHO05D009158 5.2e-35 151.8 82 81.7
MD17G1223400 Malus domestica HOM05D007259 ORTHO05D009158 1.7e-33 146.7 83 80.7
Aqoxy2G00331 Aquilegia oxysepala HOM05D001307 ORTHO05D001158 4.1e-32 142.1 91 69.2
ATR0739G058 Amborella trichopoda HOM05D007259 ORTHO05D009158 4.5e-31 138.7 87 73.6
MD17G1223600 Malus domestica HOM05D007259 ORTHO05D009158 1.3e-30 137.1 83 71.1
FAN02G2583 Fragaria x ananassa HOM05D007259 ORTHO05D009158 3.8e-30 135.6 82 70.7
Lj5C80T7 Lonicera japonica HOM05D007259 ORTHO05D009158 4.7e-28 128.6 82 68.3
Cpa.g.sc10.78 Carica papaya HOM05D007259 ORTHO05D009158 2.3e-27 126.3 82 67.1
MELO3C026739.2 Cucumis melo HOM05D007259 ORTHO05D009158 2.3e-27 126.3 90 63.3
HPP92_010738 Vanilla planifolia HOM05D007259 ORTHO05D009158 1.5e-26 123.6 94 61.7
SalBow8G2481 Salvia bowleyana HOM05D007259 ORTHO05D009158 1.0e-19 100.9 71 71.8
COL.COLO4_26703 Corchorus olitorius HOM05D007259 ORTHO05D009158 3.3e-13 79.3 43 83.7


User provided reference genes

Program Settings