Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4571 Avicennia marina HOM05D004897 ORTHO05D005928 0.0e+00 1245.3 698 100.0
Migut.D01558 Erythranthe guttata HOM05D004897 ORTHO05D005928 9.4e-234 813.9 704 70.3
SGA_v2.0_scaffold168G38498 Striga asiatica HOM05D004897 ORTHO05D005928 1.6e-217 760.0 700 66.7
SalBow1G4576 Salvia bowleyana HOM05D004897 ORTHO05D005928 5.2e-208 728.4 698 65.5
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 7.1e-189 664.8 703 59.7
Cc04_g06380 Coffea canephora HOM05D004897 ORTHO05D005928 4.5e-159 565.8 713 53.9
Hma1.2p1_0669F.1_g200180 Hydrangea macrophylla HOM05D004897 ORTHO05D005928 8.7e-155 551.6 736 54.3
CSS0030961 Camellia sinensis var. sinensis HOM05D004897 ORTHO05D005928 1.1e-154 551.2 728 54.5
Actinidia35124 Actinidia chinensis HOM05D004897 ORTHO05D005928 7.6e-151 538.5 728 52.9
Actinidia18901 Actinidia chinensis HOM05D004897 ORTHO05D005928 8.4e-150 535.0 719 53.3
Duzib084G0246 Durio zibethinus HOM05D004897 ORTHO05D005928 2.3e-147 526.9 716 52.9
Thecc.03G053700 Theobroma cacao HOM05D004897 ORTHO05D005928 1.9e-146 523.9 729 52.5
Nitab4.5_0006894g0040 Nicotiana tabacum HOM05D004897 ORTHO05D005928 2.0e-143 513.8 745 51.4
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 6.5e-142 508.8 724 51.7
DCAR_014009 Daucus carota HOM05D004897 ORTHO05D005928 6.5e-142 508.8 711 51.9
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 3.2e-141 506.5 714 52.4
Lj9C421G3 Lonicera japonica HOM05D004897 ORTHO05D005928 3.0e-139 500.0 707 50.8
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.5e-138 497.7 719 50.5
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 5.7e-138 495.7 727 49.8
Cfa019677 Carpinus fangiana HOM05D004897 ORTHO05D005928 2.8e-137 493.4 720 51.2
TAR622G0961 Trochodendron aralioides HOM05D004897 ORTHO05D005928 8.2e-137 491.9 740 49.6
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 3.1e-136 490.0 719 50.1
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 5.3e-136 489.2 725 50.5
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 9.0e-136 488.4 720 49.6
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 2.6e-135 486.9 723 50.2
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 2.9e-134 483.4 717 49.2
QL10p028331 Quercus lobata HOM05D004897 ORTHO05D005928 6.5e-134 482.3 706 51.3
QL10p028216 Quercus lobata HOM05D004897 ORTHO05D005928 8.5e-134 481.9 706 51.1
Nn4g24194 Nelumbo nucifera HOM05D004897 ORTHO05D005928 2.5e-133 480.3 742 47.4
Potri.015G039800 Populus trichocarpa HOM05D004897 ORTHO05D005928 7.2e-133 478.8 728 48.9
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 1.6e-132 477.6 708 49.4
Rhsim12G0138900 Rhododendron simsii HOM05D004897 ORTHO05D005928 2.1e-132 477.2 698 51.4
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 1.0e-131 474.9 707 50.8
Nitab4.5_0001456g0120 Nicotiana tabacum HOM05D004897 ORTHO05D005928 2.3e-131 473.8 737 49.1
CiPaw.15G140900 Carya illinoinensis HOM05D004897 ORTHO05D005928 1.5e-130 471.1 718 49.2
FAN13G1819 Fragaria x ananassa HOM05D004897 ORTHO05D005928 3.3e-130 469.9 725 49.2
FAN04G2242 Fragaria x ananassa HOM05D004897 ORTHO05D005928 5.7e-130 469.2 728 49.5
COL.COLO4_16135 Corchorus olitorius HOM05D004897 ORTHO05D005928 7.4e-130 468.8 717 50.1
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 3.7e-129 466.5 738 47.3
Sabra15G0057300 Salix brachista HOM05D004897 ORTHO05D005928 3.4e-127 459.9 720 48.9
Gohir.A09G175700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.3e-126 458.0 719 48.1
FAN08G3076 Fragaria x ananassa HOM05D004897 ORTHO05D005928 2.2e-126 457.2 722 49.0
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 3.8e-126 456.4 736 47.8
Medtr8g107060 Medicago truncatula HOM05D004897 ORTHO05D005928 1.1e-125 454.9 721 46.3
TWI60G0918 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 1.1e-125 454.9 729 48.1
Lalb_Chr05g0221751 Lupinus albus HOM05D004897 ORTHO05D005928 1.9e-125 454.1 703 47.9
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 2.5e-125 453.8 725 48.0
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 3.2e-125 453.4 714 48.3
Glyma.05G244800 Glycine max HOM05D004897 ORTHO05D005928 1.2e-124 451.4 710 48.6
VMungo0251G1788 Vigna mungo HOM05D004897 ORTHO05D005928 1.6e-124 451.1 712 47.6
TWI81G0456 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 4.7e-124 449.5 733 47.6
Dinv18253 Davidia involucrata HOM05D004897 ORTHO05D005928 2.3e-123 447.2 542 56.6
Haze_18817 Corylus avellana HOM05D004897 ORTHO05D005928 3.0e-123 446.8 793 46.4
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 3.9e-123 446.4 727 47.0
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 6.7e-123 445.7 706 49.0
Psat7g002120 Pisum sativum HOM05D004897 ORTHO05D005928 6.7e-123 445.7 714 47.8
AT1G18190 Arabidopsis thaliana HOM05D004897 ORTHO05D005928 8.8e-123 445.3 708 48.0
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 1.1e-122 444.9 709 47.5
Phvul.002G329100 Phaseolus vulgaris HOM05D004897 ORTHO05D005928 2.0e-122 444.1 711 47.1
THA.LOC104812165 Tarenaya hassleriana HOM05D004897 ORTHO05D005928 1.4e-120 438.0 714 47.8
Ca_17200_v3 Cicer arietinum L. HOM05D004897 ORTHO05D005928 1.6e-119 434.5 718 46.7
vmacro16414 Vaccinium macrocarpon HOM05D004897 ORTHO05D005928 2.2e-118 430.6 886 43.1
ClCG06G014390 Citrullus lanatus HOM05D004897 ORTHO05D005928 1.1e-117 428.3 717 45.5
CsaV3_1G004270 Cucumis sativus L. HOM05D004897 ORTHO05D005928 5.5e-117 426.0 712 46.1
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 7.2e-117 425.6 705 47.2
PSO017G1741 Papaver somniferum HOM05D004897 ORTHO05D005928 7.2e-117 425.6 702 47.9
Sp1g16170 Schrenkiella parvula HOM05D004897 ORTHO05D005928 8.0e-116 422.2 709 46.7
AL1G30560 Arabidopsis lyrata HOM05D004897 ORTHO05D005928 1.0e-115 421.8 707 46.7
Atru.chr9.1748 Acer truncatum HOM05D004897 ORTHO05D005928 1.8e-115 421.0 699 46.8
Aqoxy3G00106 Aquilegia oxysepala HOM05D004897 ORTHO05D005928 4.0e-115 419.9 713 46.4
Carub.0001s1783 Capsella rubella HOM05D004897 ORTHO05D005928 5.2e-115 419.5 709 46.3
arahy.Tifrunner.gnm1.ann1.Y8NJDB Arachis hypogaea HOM05D004897 ORTHO05D005928 3.3e-114 416.8 735 44.8
arahy.Tifrunner.gnm1.ann1.QTT902 Arachis hypogaea HOM05D004897 ORTHO05D005928 7.5e-114 415.6 749 44.9
PSO478G0546 Papaver somniferum HOM05D004897 ORTHO05D005928 1.7e-113 414.5 702 47.7
Sc10g0009320 Simmondsia chinensis HOM05D004897 ORTHO05D005928 1.7e-113 414.5 702 48.6
BcaB07g31825 Brassica carinata HOM05D004897 ORTHO05D005928 8.2e-113 412.1 706 46.9
BraA06t24553Z Brassica rapa HOM05D004897 ORTHO05D005928 1.1e-112 411.8 705 46.8
ECA233G2541 Erigeron canadensis HOM05D004897 ORTHO05D005928 1.1e-112 411.8 703 45.0
A06p14220 Brassica napus HOM05D004897 ORTHO05D005928 1.8e-112 411.0 711 46.4
C05p16500 Brassica napus HOM05D004897 ORTHO05D005928 5.3e-112 409.5 711 45.7
BolC5t30347H Brassica oleracea HOM05D004897 ORTHO05D005928 9.1e-112 408.7 711 45.7
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 2.2e-110 404.1 704 45.2
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 1.1e-109 401.7 715 46.0
Aa31LG7G2880 Aethionema arabicum HOM05D004897 ORTHO05D005928 1.9e-109 401.0 745 45.1
Ah.11g045250 Amaranthus hybridus HOM05D004897 ORTHO05D005928 2.1e-108 397.5 714 46.6
Sed0002019 Sechium edule HOM05D004897 ORTHO05D005928 8.8e-107 392.1 705 44.4
PGR083G0946 Punica granatum HOM05D004897 ORTHO05D005928 1.2e-106 391.7 722 44.3
Dinv10174 Davidia involucrata HOM05D004897 ORTHO05D005928 2.8e-105 387.1 578 52.4
MELO3C017351.2 Cucumis melo HOM05D004897 ORTHO05D005928 4.8e-105 386.3 712 42.8
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 6.3e-105 386.0 712 43.5
AUR62042935 Chenopodium quinoa HOM05D004897 ORTHO05D005928 2.7e-103 380.6 709 42.0
Peaxi162Scf00683g00441 Petunia axillaris HOM05D004897 ORTHO05D005928 2.1e-100 370.9 298 68.5
HanXRQChr08g0227441 Helianthus annuus HOM05D004897 ORTHO05D005928 2.7e-100 370.5 707 46.1
BcaC05g25714 Brassica carinata HOM05D004897 ORTHO05D005928 7.5e-98 362.5 353 57.8
Cpa.g.sc3.408 Carica papaya HOM05D004897 ORTHO05D005928 1.1e-96 358.6 592 50.2
TPR.G1406 Trifolium pratense HOM05D004897 ORTHO05D005928 1.6e-95 354.8 671 44.1
Sed0018128 Sechium edule HOM05D004897 ORTHO05D005928 5.9e-95 352.8 534 47.8
BcaC07g38902 Brassica carinata HOM05D004897 ORTHO05D005928 2.0e-87 327.8 700 38.1
HPP92_013368 Vanilla planifolia HOM05D004897 ORTHO05D005928 1.7e-86 324.7 711 40.1
FvH4_5g17221 Fragaria vesca HOM05D004897 ORTHO05D005928 2.8e-84 317.4 584 45.9
BraA08t34983Z Brassica rapa HOM05D004897 ORTHO05D005928 2.3e-83 314.3 333 53.8
C08p18450 Brassica napus HOM05D004897 ORTHO05D005928 5.2e-83 313.2 336 53.0
Os04g0652500 Oryza sativa ssp. japonica HOM05D004897 ORTHO05D005928 7.5e-74 282.7 310 50.3
BcaNung05436 Brassica carinata HOM05D004897 ORTHO05D005928 2.3e-67 261.2 305 50.5
Zm00001eb068130 Zea mays HOM05D004897 ORTHO05D005928 3.7e-65 253.8 300 49.7
GSVIVG01008417001 Vitis vinifera HOM05D004897 ORTHO05D005928 3.2e-64 250.8 229 60.3
GSVIVG01008418001 Vitis vinifera HOM05D004897 ORTHO05D005928 3.0e-62 244.2 480 47.9
CARHR018760 Cardamine hirsuta HOM05D004897 ORTHO05D005928 1.8e-59 235.0 252 51.6
BolC8t49476H Brassica oleracea HOM05D004897 ORTHO05D005928 5.2e-59 233.4 299 45.8
CARHR018770 Cardamine hirsuta HOM05D004897 ORTHO05D005928 3.4e-50 204.1 461 44.3
ATR1102G018 Amborella trichopoda HOM05D004897 ORTHO05D005928 3.5e-47 194.1 239 51.0
BcaB03g12969 Brassica carinata HOM05D004897 ORTHO05D005928 1.0e-46 192.6 320 42.2
Oeu041185.1 Olea europaea HOM05D004897 ORTHO05D005928 6.6e-46 189.9 437 37.5
Gorai.006G192100 Gossypium raimondii HOM05D004897 ORTHO05D005928 1.3e-44 185.7 173 56.6
ATR1102G065 Amborella trichopoda HOM05D004897 ORTHO05D005928 1.6e-44 185.3 519 39.3
Gohir.D09G170550 Gossypium hirsutum HOM05D004897 ORTHO05D005928 3.6e-44 184.1 173 56.6
unitig_0.g806 Utricularia gibba HOM05D004897 ORTHO05D005928 1.9e-40 171.8 194 51.5
AagrBONN_evm.TU.Sc2ySwM_344.4779 Anthoceros agrestis HOM05D004897 ORTHO05D005928 1.8e-38 165.2 338 38.2
Mapoly0056s0112 Marchantia polymorpha HOM05D004897 ORTHO05D005928 5.3e-35 153.7 365 34.8
SEGI_33031 Sequoiadendron giganteum HOM05D004897 ORTHO05D005928 5.8e-34 150.2 239 39.7
Oeu041181.1 Olea europaea HOM05D004897 ORTHO05D005928 1.9e-32 145.2 300 38.3
Pp3c2_5550 Physcomitrium patens HOM05D004897 ORTHO05D005928 9.3e-32 142.9 824 30.0
AUR62041008 Chenopodium quinoa HOM05D004897 ORTHO05D005928 3.7e-28 131.0 431 39.2
Zm00001eb072950 Zea mays HOM05D004897 ORTHO05D005928 1.1e-24 119.4 145 50.3
Actinidia04720 Actinidia chinensis HOM05D004897 ORTHO05D005928 2.1e-23 115.2 426 37.3
CDE05G0958 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 2.5e-21 108.2 86 70.9
Zm00001eb168530 Zea mays HOM05D004897 ORTHO05D005928 9.1e-19 99.8 127 43.3
Zm00001eb243110 Zea mays HOM05D004897 ORTHO05D005928 9.1e-19 99.8 127 43.3
Zm00001eb381910 Zea mays HOM05D004897 ORTHO05D005928 9.1e-19 99.8 127 43.3
Zm00001eb382530 Zea mays HOM05D004897 ORTHO05D005928 9.1e-19 99.8 127 43.3
Zm00001eb382330 Zea mays HOM05D004897 ORTHO05D005928 6.1e-15 87.0 88 53.4
Zm00001eb280830 Zea mays HOM05D004897 ORTHO05D005928 2.3e-14 85.1 119 39.5
Peaxi162Scf00683g00456 Petunia axillaris HOM05D004897 ORTHO05D005928 3.3e-13 81.3 132 46.2
SMO269G0021 Selaginella moellendorffii HOM05D004897 ORTHO05D005928 6.9e-11 73.6 228 31.6
TWI36G1671 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 5.9e-10 70.5 48 83.3
BcaC05g25715 Brassica carinata HOM05D004897 ORTHO05D005928 7.7e-10 70.1 252 34.1
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 1.3e-09 69.3 359 25.9
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 1.7e-09 68.9 368 25.5
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 1.7e-09 68.9 368 25.5
PGSC0003DMG403005669 Solanum tuberosum HOM05D004897 ORTHO05D005928 1.7e-09 68.9 62 54.8
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 3.8e-09 67.8 373 26.5
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 5.0e-09 67.4 373 26.3
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.1e-08 66.2 319 24.5
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 1.1e-08 66.2 281 26.7
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 1.9e-08 65.5 355 27.0
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.9e-08 65.5 348 24.7
SEGI_22595 Sequoiadendron giganteum HOM05D004897 ORTHO05D005928 1.9e-08 65.5 608 30.3
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 2.5e-08 65.1 335 26.9
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.5e-08 65.1 348 24.7
Prupe.7G033500 Prunus persica HOM05D004897 ORTHO05D005928 2.5e-08 65.1 57 66.7
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 3.2e-08 64.7 332 24.7
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 3.2e-08 64.7 338 25.7
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 7.2e-08 63.5 319 25.4
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 9.4e-08 63.2 343 25.7
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 9.4e-08 63.2 318 24.8
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 1.2e-07 62.8 355 25.6
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 1.2e-07 62.8 355 24.2
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 1.2e-07 62.8 327 25.4
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 1.6e-07 62.4 351 24.8
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 1.6e-07 62.4 338 26.3
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.6e-07 62.4 351 23.9
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 1.6e-07 62.4 311 26.0
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 1.6e-07 62.4 348 25.0
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 2.1e-07 62.0 326 26.1
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 2.1e-07 62.0 338 24.3
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 2.1e-07 62.0 311 24.8
BolC8t49477H Brassica oleracea HOM05D004897 ORTHO05D005928 2.7e-07 61.6 206 33.5
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 3.6e-07 61.2 335 24.2
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 3.6e-07 61.2 338 25.7
Actinidia04719 Actinidia chinensis HOM05D004897 ORTHO05D005928 4.7e-07 60.8 50 56.0
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 4.7e-07 60.8 347 24.5
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 4.7e-07 60.8 333 23.7
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 4.7e-07 60.8 341 24.9
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 1.0e-06 59.7 338 25.4
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 1.0e-06 59.7 338 24.6
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 1.4e-06 59.3 314 25.8
arahy.Tifrunner.gnm1.ann1.U711QF Arachis hypogaea HOM05D004897 ORTHO05D005928 3.0e-06 58.2 82 51.2
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 3.0e-06 58.2 338 24.9
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 3.0e-06 58.2 312 22.8
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 3.0e-06 58.2 306 23.2
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 3.9e-06 57.8 310 23.9
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 3.9e-06 57.8 364 25.0
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 3.9e-06 57.8 355 26.8
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 6.7e-06 57.0 333 22.8
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 8.8e-06 56.6 323 23.2
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 8.8e-06 56.6 311 24.4
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 8.8e-06 56.6 341 24.6


User provided reference genes

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