Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 5.0e-182 641.0 322 100.0
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 5.8e-138 494.6 329 73.9
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 3.2e-136 488.8 328 74.1
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 4.6e-135 485.0 360 68.1
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.1e-131 473.8 327 73.4
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 3.9e-126 455.3 294 75.5
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.6e-124 449.9 294 72.4
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 3.7e-124 448.7 321 67.9
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 3.1e-123 445.7 294 72.4
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 3.1e-123 445.7 312 69.9
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 1.2e-122 443.7 322 68.0
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 3.4e-122 442.2 319 68.0
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 2.9e-121 439.1 294 71.4
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 6.5e-121 438.0 294 72.1
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 1.1e-120 437.2 295 70.8
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.1e-120 437.2 326 66.0
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.1e-120 437.2 295 70.5
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 2.5e-120 436.0 294 71.8
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 4.2e-120 435.3 305 70.2
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 5.5e-120 434.9 299 71.6
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.2e-119 433.7 294 71.4
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 1.6e-119 433.3 294 71.8
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 6.1e-119 431.4 295 72.5
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 1.0e-118 430.6 294 71.1
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 1.8e-118 429.9 319 67.1
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 3.0e-118 429.1 294 69.4
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 3.9e-118 428.7 294 70.4
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 3.9e-118 428.7 294 70.4
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 3.9e-118 428.7 294 70.7
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 5.1e-118 428.3 294 71.8
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 5.1e-118 428.3 294 69.7
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 8.7e-118 427.6 294 70.7
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.5e-117 426.0 294 69.7
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 5.7e-117 424.9 294 69.7
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 7.4e-117 424.5 294 71.4
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 7.4e-117 424.5 294 69.0
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.6e-116 423.3 293 68.3
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.8e-116 422.5 294 71.1
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 2.8e-116 422.5 307 69.1
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 1.4e-115 420.2 297 68.7
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 4.1e-115 418.7 294 69.7
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 6.9e-115 417.9 300 67.7
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 6.9e-115 417.9 294 69.4
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 6.9e-115 417.9 294 69.4
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 6.9e-115 417.9 294 69.4
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 9.0e-115 417.5 296 67.9
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 9.0e-115 417.5 296 67.9
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 9.0e-115 417.5 294 67.7
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.2e-114 417.2 320 64.1
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 1.2e-114 417.2 324 65.1
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 3.4e-114 415.6 309 67.0
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 4.5e-114 415.2 297 68.0
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 5.9e-114 414.8 295 67.1
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 7.7e-114 414.5 296 68.2
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 1.3e-113 413.7 296 67.6
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 1.3e-113 413.7 324 64.2
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.9e-113 412.5 308 66.2
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 3.8e-113 412.1 294 68.7
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 3.8e-113 412.1 294 68.7
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 3.8e-113 412.1 296 67.9
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 1.4e-112 410.2 294 66.0
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 1.4e-112 410.2 298 67.4
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.2e-112 409.1 315 63.8
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 3.2e-112 409.1 294 67.7
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 3.2e-112 409.1 322 62.7
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 4.2e-112 408.7 294 67.3
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 5.5e-112 408.3 293 69.3
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 1.2e-111 407.1 309 65.4
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.1e-111 406.4 297 66.7
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.1e-111 406.4 297 66.7
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 2.7e-111 406.0 294 65.3
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 3.6e-111 405.6 309 65.4
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 4.6e-111 405.2 295 65.8
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 4.6e-111 405.2 294 67.3
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 4.6e-111 405.2 319 63.6
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 6.1e-111 404.8 288 68.1
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 1.0e-110 404.1 294 66.3
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 1.8e-110 403.3 294 67.3
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 3.9e-110 402.1 297 66.7
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 5.1e-110 401.7 294 65.0
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 8.8e-110 401.0 293 67.6
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.1e-109 400.6 293 67.9
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 2.0e-109 399.8 295 67.1
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 4.3e-109 398.7 294 65.6
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 5.7e-109 398.3 299 65.9
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 9.7e-109 397.5 298 65.4
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 9.7e-109 397.5 318 61.0
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 1.3e-108 397.1 315 64.1
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 1.7e-108 396.7 308 65.3
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 2.8e-108 396.0 298 65.4
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 1.4e-107 393.7 317 62.8
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.5e-106 390.2 269 70.6
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.5e-106 390.2 345 57.7
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 1.5e-106 390.2 328 60.7
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.0e-105 387.5 294 66.0
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.2e-105 386.3 293 64.2
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.2e-105 386.3 293 64.2
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 3.8e-105 385.6 299 64.5
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.0e-105 385.2 293 63.8
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 8.5e-105 384.4 319 60.5
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 9.4e-104 380.9 296 64.2
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 1.1e-101 374.0 299 60.5
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.0e-101 373.2 293 64.8
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 7.4e-101 371.3 325 58.5
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.6e-98 363.6 293 60.1
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.5e-96 357.1 288 60.8
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 3.2e-96 355.9 288 60.8
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.6e-95 353.6 288 59.7
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.6e-95 352.4 294 61.9
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 8.0e-95 351.3 319 52.4
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 6.3e-92 341.7 258 61.2
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 7.0e-91 338.2 321 55.1
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 9.1e-91 337.8 307 55.4
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 1.9e-88 330.1 272 62.1
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 6.8e-86 321.6 289 53.3
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 4.1e-83 312.4 304 57.2
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 7.0e-83 311.6 293 56.3
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 2.1e-79 300.1 213 68.1
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.2e-77 294.3 263 55.5
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.6e-74 283.9 293 48.1
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 3.0e-70 269.6 290 44.8
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 9.2e-67 258.1 293 43.7
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 9.2e-67 258.1 290 43.8
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.0e-66 256.9 199 64.3
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 2.0e-66 256.9 347 40.6
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 1.0e-65 254.6 291 41.6
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 1.2e-63 247.7 276 46.7
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 4.4e-61 239.2 201 62.7
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.2e-58 231.1 162 67.9
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 2.7e-58 229.9 260 44.6
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 7.5e-53 211.8 226 50.4
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 1.9e-48 197.2 174 55.2
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 2.4e-38 163.7 114 68.4
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 1.9e-35 154.1 283 32.9
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 2.4e-35 153.7 84 86.9
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.5e-32 144.4 121 55.4
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.9e-28 130.2 115 60.9
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.1e-26 124.0 68 83.8
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 1.8e-25 120.9 102 58.8
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 3.9e-25 119.8 92 60.9
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 3.9e-25 119.8 92 60.9
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 6.7e-25 119.0 73 75.3
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 9.0e-22 108.6 76 67.1
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 2.0e-21 107.5 109 47.7
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 5.8e-21 105.9 87 56.3
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 2.9e-20 103.6 103 50.5
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 1.6e-18 97.8 110 45.5
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 6.0e-18 95.9 177 36.7
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 1.0e-12 78.6 58 65.5
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.2e-12 77.4 64 60.9
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 3.8e-12 76.6 58 60.3
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 8.4e-12 75.5 47 72.3
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.8e-09 67.8 61 52.5
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 1.3e-07 61.6 51 56.9
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.1e-06 58.5 57 43.9
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.8e-06 57.8 91 30.8


User provided reference genes

Program Settings