Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4541 Avicennia marina HOM05D000175 ORTHO05D001341 3.3e-69 265.0 142 100.0
RcHm_v2.0_Chr2g0146791 Rosa chinensis HOM05D000175 ORTHO05D001341 6.1e-23 111.3 148 49.3
FAN14G2469 Fragaria x ananassa HOM05D000175 ORTHO05D001341 5.7e-21 104.8 148 48.0
SGA_v2.0_scaffold4G02091 Striga asiatica HOM05D000175 ORTHO05D001341 7.5e-21 104.4 123 53.7
FvH4_6g35350 Fragaria vesca HOM05D000175 ORTHO05D001341 9.8e-21 104.0 148 48.0
FAN09G0030 Fragaria x ananassa HOM05D000175 ORTHO05D001341 9.8e-21 104.0 148 48.0
FAN05G3373 Fragaria x ananassa HOM05D000175 ORTHO05D001341 2.8e-20 102.4 148 47.3
Ciclev10026366m.g Citrus clementina HOM05D000175 ORTHO05D001341 3.7e-20 102.1 148 46.6
Migut.O00921 Erythranthe guttata HOM05D000175 ORTHO05D001341 3.7e-20 102.1 131 52.7
FAN02G1378 Fragaria x ananassa HOM05D000175 ORTHO05D001341 6.3e-20 101.3 148 47.3
MD09G1176500 Malus domestica HOM05D000175 ORTHO05D001341 8.3e-20 100.9 149 47.7
MD17G1150300 Malus domestica HOM05D000175 ORTHO05D001341 1.2e-18 97.1 149 45.6
Thecc.06G126800 Theobroma cacao HOM05D000175 ORTHO05D001341 8.6e-17 90.9 144 48.6
Actinidia21817 Actinidia chinensis HOM05D000175 ORTHO05D001341 3.3e-16 89.0 148 45.9
Cpa.g.sc452.1 Carica papaya HOM05D000175 ORTHO05D001341 4.2e-16 88.6 148 44.6
MSTRG.22531 Avicennia marina HOM05D000175 ORTHO05D001341 7.2e-16 87.8 125 48.8
TPR.G16660 Trifolium pratense HOM05D000175 ORTHO05D001341 9.5e-16 87.4 153 45.8
Gohir.A10G051800 Gossypium hirsutum HOM05D000175 ORTHO05D001341 1.6e-15 86.7 144 47.9
Lj3g0015576 Lotus japonicus HOM05D000175 ORTHO05D001341 2.8e-15 85.9 153 44.4
Gohir.D10G053500 Gossypium hirsutum HOM05D000175 ORTHO05D001341 3.6e-15 85.5 144 47.9
Gorai.011G057100 Gossypium raimondii HOM05D000175 ORTHO05D001341 3.6e-15 85.5 144 47.9
Dinv20397 Davidia involucrata HOM05D000175 ORTHO05D001341 4.7e-15 85.1 134 47.8
CAN.G790.63 Capsicum annuum HOM05D000175 ORTHO05D001341 1.8e-14 83.2 134 47.0
MBI13_g01667_MAGBIO Magnolia biondii HOM05D000175 ORTHO05D001341 1.8e-14 83.2 145 44.1
EL10Ac7g16457 Beta vulgaris HOM05D000175 ORTHO05D001341 8.9e-14 80.9 163 42.3
QL05p002022 Quercus lobata HOM05D000175 ORTHO05D001341 8.9e-14 80.9 145 43.4
DCAR_016098 Daucus carota HOM05D000175 ORTHO05D001341 2.6e-13 79.3 147 44.2
Atru.chr1.4132 Acer truncatum HOM05D000175 ORTHO05D001341 4.4e-13 78.6 133 43.6
VMungo0331G1704 Vigna mungo HOM05D000175 ORTHO05D001341 4.4e-13 78.6 139 44.6
Medtr8g022310 Medicago truncatula HOM05D000175 ORTHO05D001341 1.7e-12 76.6 149 40.3
AUR62001435 Chenopodium quinoa HOM05D000175 ORTHO05D001341 3.7e-12 75.5 162 39.5
CSS0026705 Camellia sinensis var. sinensis HOM05D000175 ORTHO05D001341 4.9e-12 75.1 124 43.5
Cfa003495 Carpinus fangiana HOM05D000175 ORTHO05D001341 1.8e-11 73.2 151 40.4
Potri.001G164700 Populus trichocarpa HOM05D000175 ORTHO05D001341 2.4e-11 72.8 149 38.9
Sabra03G0041700 Salix brachista HOM05D000175 ORTHO05D001341 2.4e-11 72.8 151 40.4
THA.LOC104815610 Tarenaya hassleriana HOM05D000175 ORTHO05D001341 2.4e-11 72.8 138 45.7
TWI14G0358 Tripterygium wilfordii HOM05D000175 ORTHO05D001341 2.4e-11 72.8 99 47.5
Lsat_1_v5_gn_1_37680 Lactuca sativa HOM05D000175 ORTHO05D001341 5.4e-11 71.6 96 53.1
HanXRQChr04g0094491 Helianthus annuus HOM05D000175 ORTHO05D001341 7.0e-11 71.2 128 46.1
Oeu059027.1 Olea europaea HOM05D000175 ORTHO05D001341 7.0e-11 71.2 101 45.5
CSS0024760 Camellia sinensis var. sinensis HOM05D000175 ORTHO05D001341 9.2e-11 70.9 101 46.5
CiPaw.02G133100 Carya illinoinensis HOM05D000175 ORTHO05D001341 9.2e-11 70.9 123 43.1
Oeu008516.1 Olea europaea HOM05D000175 ORTHO05D001341 2.0e-10 69.7 128 41.4
GSVIVG01016700001 Vitis vinifera HOM05D000175 ORTHO05D001341 3.5e-10 68.9 127 40.9
Eucgr.J02609 Eucalyptus grandis HOM05D000175 ORTHO05D001341 4.5e-10 68.6 151 37.7
TWI59G1365 Tripterygium wilfordii HOM05D000175 ORTHO05D001341 7.8e-10 67.8 149 39.6
Lalb_Chr04g0253781 Lupinus albus HOM05D000175 ORTHO05D001341 1.0e-09 67.4 148 39.2
HPP92_016223 Vanilla planifolia HOM05D000175 ORTHO05D001341 1.3e-09 67.0 134 37.3
Haze_16092 Corylus avellana HOM05D000175 ORTHO05D001341 1.7e-09 66.6 151 38.4
Potri.003G070600 Populus trichocarpa HOM05D000175 ORTHO05D001341 2.3e-09 66.2 152 38.2
Duzib235G0394 Durio zibethinus HOM05D000175 ORTHO05D001341 2.9e-09 65.9 129 43.4
Prupe.3G035500 Prunus persica HOM05D000175 ORTHO05D001341 2.9e-09 65.9 127 43.3
Phvul.010G126700 Phaseolus vulgaris HOM05D000175 ORTHO05D001341 3.8e-09 65.5 124 41.9
Hund05714 Selenicereus undatus HOM05D000175 ORTHO05D001341 3.8e-09 65.5 157 37.6
Haze_16096 Corylus avellana HOM05D000175 ORTHO05D001341 5.0e-09 65.1 151 37.7
HPP92_016243 Vanilla planifolia HOM05D000175 ORTHO05D001341 5.0e-09 65.1 137 38.7
Peaxi162Scf00038g02237 Petunia axillaris HOM05D000175 ORTHO05D001341 8.6e-09 64.3 135 39.3
arahy.Tifrunner.gnm1.ann1.N6CTXA Arachis hypogaea HOM05D000175 ORTHO05D001341 1.1e-08 63.9 103 46.6
Glyma.16G011500 Glycine max HOM05D000175 ORTHO05D001341 1.5e-08 63.5 114 41.2
CARHR089080 Cardamine hirsuta HOM05D000175 ORTHO05D001341 1.9e-08 63.2 148 37.8
Glyma.07G043100 Glycine max HOM05D000175 ORTHO05D001341 1.9e-08 63.2 124 39.5
CiPaw.01G214400 Carya illinoinensis HOM05D000175 ORTHO05D001341 2.5e-08 62.8 125 40.8
Lalb_Chr17g0343381 Lupinus albus HOM05D000175 ORTHO05D001341 2.5e-08 62.8 150 40.0
Duzib192G0659 Durio zibethinus HOM05D000175 ORTHO05D001341 3.3e-08 62.4 151 42.4
Psat4g219400 Pisum sativum HOM05D000175 ORTHO05D001341 3.3e-08 62.4 105 42.9
Ah.08g217160 Amaranthus hybridus HOM05D000175 ORTHO05D001341 4.3e-08 62.0 164 34.1
HanXRQChr10g0311911 Helianthus annuus HOM05D000175 ORTHO05D001341 4.3e-08 62.0 131 40.5
Gohir.A05G138100 Gossypium hirsutum HOM05D000175 ORTHO05D001341 7.3e-08 61.2 149 43.0
SGA_v2.0_scaffold71G23901 Striga asiatica HOM05D000175 ORTHO05D001341 9.5e-08 60.8 101 38.6
Gorai.009G144500 Gossypium raimondii HOM05D000175 ORTHO05D001341 1.2e-07 60.5 145 40.7
Lj6g0025917 Lotus japonicus HOM05D000175 ORTHO05D001341 1.2e-07 60.5 134 39.6
Manes.04G148900 Manihot esculenta HOM05D000175 ORTHO05D001341 1.2e-07 60.5 159 41.5
Gohir.D05G140200 Gossypium hirsutum HOM05D000175 ORTHO05D001341 1.6e-07 60.1 145 40.7
CANSAT56G1359 Cannabis sativa HOM05D000175 ORTHO05D001341 3.6e-07 58.9 135 40.7
TAR624G0362 Trochodendron aralioides HOM05D000175 ORTHO05D001341 3.6e-07 58.9 108 39.8
Sp3g12470 Schrenkiella parvula HOM05D000175 ORTHO05D001341 6.1e-07 58.2 145 37.2
AL3G26460 Arabidopsis lyrata HOM05D000175 ORTHO05D001341 1.8e-06 56.6 109 40.4
A01p39490 Brassica napus HOM05D000175 ORTHO05D001341 1.8e-06 56.6 85 48.2
CANSAT25G2373 Cannabis sativa HOM05D000175 ORTHO05D001341 2.3e-06 56.2 110 41.8
ECA247G1098 Erigeron canadensis HOM05D003140 ORTHO05D003851 3.0e-06 55.8 136 38.2
VMungo1309G1472 Vigna mungo HOM05D000175 ORTHO05D001341 3.0e-06 55.8 120 40.0
Sabra01G0128300 Salix brachista HOM05D000175 ORTHO05D001341 5.2e-06 55.1 101 38.6
Solyc03g123560.3 Solanum lycopersicum HOM05D000175 ORTHO05D001341 8.9e-06 54.3 131 42.7


User provided reference genes

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