Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 1.7e-233 812.4 431 100.0
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 8.8e-174 614.0 429 74.6
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 3.5e-170 602.1 424 73.8
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 3.6e-159 565.5 427 73.1
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 8.6e-153 544.3 430 67.0
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 6.8e-142 508.1 426 65.5
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 7.5e-141 504.6 418 64.6
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.9e-140 502.7 417 63.8
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 4.9e-140 501.9 431 62.6
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 8.3e-140 501.1 431 62.4
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.1e-139 500.7 428 63.1
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 1.4e-139 500.4 424 62.5
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 5.4e-139 498.4 431 63.1
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.2e-138 497.3 447 62.6
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 7.8e-138 494.6 433 62.8
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.9e-136 490.0 356 71.1
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.9e-136 490.0 421 62.2
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 5.6e-136 488.4 427 62.3
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 9.5e-136 487.6 327 75.2
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.2e-135 487.3 420 62.4
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.7e-135 485.3 425 61.6
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 1.1e-134 484.2 439 59.9
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 1.4e-134 483.8 432 61.6
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.4e-134 483.8 425 61.4
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 5.2e-134 481.9 424 63.0
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 2.0e-133 479.9 423 61.2
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.6e-133 479.6 425 60.9
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 5.8e-133 478.4 371 66.0
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 5.8e-133 478.4 426 62.0
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 7.5e-133 478.0 424 60.6
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 7.5e-133 478.0 363 67.8
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 7.5e-133 478.0 425 61.9
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 1.4e-131 473.8 424 60.8
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 2.4e-131 473.0 432 60.6
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 3.2e-131 472.6 370 65.1
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 3.2e-131 472.6 424 60.8
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 1.6e-130 470.3 427 60.9
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.6e-130 470.3 379 65.2
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 2.7e-130 469.5 426 61.5
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 4.6e-130 468.8 428 59.8
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 3.0e-129 466.1 423 57.9
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.0e-129 466.1 429 59.4
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.3e-128 462.6 423 58.9
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 5.6e-128 461.8 383 63.2
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 7.3e-128 461.5 423 58.9
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 9.5e-128 461.1 389 62.7
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 3.6e-127 459.1 433 59.4
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 3.6e-127 459.1 428 59.6
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.7e-127 458.8 423 58.6
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 4.7e-127 458.8 335 69.3
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 6.2e-127 458.4 451 56.5
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 5.2e-126 455.3 431 59.9
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 6.8e-126 454.9 373 64.9
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 1.2e-125 454.1 424 56.8
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 1.5e-125 453.8 427 58.3
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 1.5e-125 453.8 438 58.0
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 1.5e-125 453.8 452 56.6
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 1.5e-125 453.8 426 58.0
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 7.6e-125 451.4 424 57.5
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 9.9e-125 451.1 424 56.8
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 9.9e-125 451.1 335 68.1
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 1.3e-124 450.7 331 68.3
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 6.4e-124 448.4 425 59.1
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.4e-123 447.2 424 56.6
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.9e-123 446.8 423 58.9
Prupe.5G224900 Prunus persica HOM05D003094 ORTHO05D003482 4.2e-123 445.7 426 57.7
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 4.2e-123 445.7 333 67.6
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 6.0e-122 441.8 423 57.4
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 1.0e-121 441.0 348 64.1
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.7e-121 440.3 425 58.1
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 1.1e-120 437.6 423 56.7
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 3.3e-120 436.0 434 54.6
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 3.3e-120 436.0 375 59.7
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 4.3e-120 435.6 424 55.4
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 4.3e-120 435.6 425 57.9
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 5.6e-120 435.3 424 55.4
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 5.6e-120 435.3 437 54.5
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 1.6e-119 433.7 424 55.0
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 2.8e-119 433.0 424 54.5
Lalb_Chr08g0242311 Lupinus albus HOM05D003094 ORTHO05D003482 2.8e-119 433.0 430 57.4
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 3.6e-119 432.6 379 59.1
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 1.1e-118 431.0 432 56.7
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 1.4e-118 430.6 432 56.5
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 1.8e-118 430.3 426 54.9
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 9.0e-118 427.9 383 60.3
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 2.0e-117 426.8 519 48.7
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 2.0e-117 426.8 427 57.4
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 4.4e-117 425.6 432 54.6
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 9.9e-117 424.5 380 60.3
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 3.8e-116 422.5 377 61.3
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 6.4e-116 421.8 426 59.6
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 1.4e-115 420.6 433 55.7
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 1.9e-115 420.2 433 55.7
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 7.1e-115 418.3 423 55.1
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 8.7e-113 411.4 468 51.7
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 8.1e-111 404.8 335 60.3
Os08g0513300 Oryza sativa ssp. japonica HOM05D003094 ORTHO05D003482 1.4e-110 404.1 334 60.8
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 3.1e-110 402.9 424 54.2
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 3.8e-108 396.0 372 57.3
Zm00001eb143930 Zea mays HOM05D003094 ORTHO05D003482 1.9e-104 383.6 339 57.8
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 5.5e-99 365.5 356 56.2
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.9e-96 357.1 426 50.7
BcaC05g28647 Brassica carinata HOM05D003094 ORTHO05D003482 1.8e-89 334.0 236 67.8
Nitab4.5_0008639g0020 Nicotiana tabacum HOM05D003094 ORTHO05D003482 9.4e-75 285.0 217 66.4
SEGI_02552 Sequoiadendron giganteum HOM05D003094 ORTHO05D003482 1.8e-62 244.2 374 43.0
Prupe.4G184600 Prunus persica HOM05D003094 ORTHO05D003482 7.2e-59 232.3 155 69.7
Oeu010083.1 Olea europaea HOM05D003094 ORTHO05D003482 8.3e-55 218.8 345 43.8
RcHm_v2.0_Chr2g0128191 Rosa chinensis HOM05D003094 ORTHO05D003482 2.9e-52 210.3 130 80.0
Oeu010081.1 Olea europaea HOM05D003094 ORTHO05D003482 2.5e-51 207.2 139 74.1
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 2.7e-50 203.8 256 46.1
TAR622G0867 Trochodendron aralioides HOM05D003094 ORTHO05D009164 1.9e-43 181.0 235 46.4
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 4.1e-38 163.3 231 42.0
Pp3c18_10090 Physcomitrium patens HOM05D003094 ORTHO05D003482 7.5e-32 142.5 121 62.0
Mapoly0002s0206 Marchantia polymorpha HOM05D003094 ORTHO05D003482 1.9e-30 137.9 172 47.7
Gohir.A06G136104 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.3e-27 127.1 101 64.4
CBR_g23797 Chara braunii HOM05D003094 ORTHO05D003482 5.2e-25 119.8 109 58.7
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.4e-22 111.7 232 35.8
Gorai.011G161100 Gossypium raimondii HOM05D003094 ORTHO05D003482 7.8e-21 105.9 79 62.0
Gohir.D10G144200 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.3e-20 104.4 79 62.0
SMO367G0461 Selaginella moellendorffii HOM05D003094 ORTHO05D003482 3.9e-20 103.6 161 40.4
Oeu029034.1 Olea europaea HOM05D003094 ORTHO05D003482 3.3e-19 100.5 85 60.0
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 1.8e-17 94.7 178 39.3
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 2.6e-16 90.9 188 45.7
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 3.7e-15 87.0 149 38.9
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 8.4e-15 85.9 109 44.0
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 3.2e-14 84.0 149 38.3
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.6e-13 81.6 149 39.6
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.0e-12 79.0 116 43.1
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.0e-12 79.0 115 42.6
Nn3g17957 Nelumbo nucifera HOM05D003094 ORTHO05D003482 4.3e-11 73.6 78 48.7
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.8e-10 70.9 122 39.3
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.2e-10 69.7 72 50.0
Aqoxy1G00379 Aquilegia oxysepala HOM05D003094 ORTHO05D003482 8.1e-10 69.3 151 32.5
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.1e-10 69.3 72 50.0
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 1.8e-09 68.2 188 33.5
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 2.4e-09 67.8 72 48.6
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 5.2e-09 66.6 142 36.6
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.8e-09 66.2 73 47.9
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 6.8e-09 66.2 85 45.9
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 8.9e-09 65.9 188 33.5
Nitab4.5_0008639g0040 Nicotiana tabacum HOM05D000806 ORTHO05D002324 1.5e-08 65.1 45 66.7
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 2.6e-08 64.3 97 40.2
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.4e-08 63.9 194 33.0
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 9.9e-08 62.4 85 45.9
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 9.9e-08 62.4 144 38.2
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 9.9e-08 62.4 141 34.0
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 9.9e-08 62.4 123 36.6
PRCOL_00003227 Prasinoderma coloniale HOM05D003094 ORTHO05D003482 1.3e-07 62.0 181 30.4
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.3e-07 62.0 178 29.8
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 2.2e-07 61.2 153 32.7
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.9e-07 60.1 140 35.0
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 6.4e-07 59.7 60 50.0
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.1e-06 58.9 145 33.1
MCO03G327 Micromonas commoda HOM05D003094 ORTHO05D003482 1.4e-06 58.5 92 37.0
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.9e-06 58.2 50 52.0
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 2.4e-06 57.8 60 50.0
BcaB05g24812 Brassica carinata HOM05D003094 ORTHO05D003482 3.2e-06 57.4 101 30.7
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 4.2e-06 57.0 184 32.1
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 5.4e-06 56.6 155 32.9
Thhalv10019822m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 5.4e-06 56.6 81 32.1
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 7.1e-06 56.2 152 31.6
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 9.3e-06 55.8 54 48.1


User provided reference genes

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