Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 3.0e-99 365.2 182 100.0
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 5.0e-94 347.8 182 92.9
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 8.5e-94 347.1 182 94.0
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 8.5e-94 347.1 182 93.4
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 1.4e-93 346.3 182 93.4
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 1.9e-93 345.9 182 94.0
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 1.9e-93 345.9 180 93.3
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 4.2e-93 344.7 182 92.9
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 7.2e-93 344.0 182 92.3
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.2e-92 343.2 182 92.9
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 91.8
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.1e-92 342.4 177 94.9
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.1e-92 342.4 182 91.8
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.1e-92 342.4 182 91.8
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 2.1e-92 342.4 180 92.8
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 3.6e-92 341.7 182 91.2
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 3.6e-92 341.7 182 91.8
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 4.7e-92 341.3 182 91.2
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 6.1e-92 340.9 182 91.2
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 6.1e-92 340.9 182 91.8
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 7.9e-92 340.5 182 91.2
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 92.3
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 1.4e-91 339.7 182 90.7
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 1.4e-91 339.7 180 92.2
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 1.8e-91 339.3 178 93.3
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.8e-91 339.3 182 89.6
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 89.6
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 89.6
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 6.7e-91 337.4 197 86.3
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 8.8e-91 337.0 182 91.8
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 8.8e-91 337.0 182 91.8
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 1.5e-90 336.3 182 90.1
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 2.6e-90 335.5 182 89.0
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 3.3e-90 335.1 182 89.6
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 3.3e-90 335.1 182 89.6
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 4.4e-90 334.7 179 91.1
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 4.4e-90 334.7 182 90.7
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 5.7e-90 334.3 182 89.0
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 5.7e-90 334.3 182 90.1
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 5.7e-90 334.3 182 87.4
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 5.7e-90 334.3 182 88.5
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 7.4e-90 334.0 182 89.6
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 9.7e-90 333.6 182 89.0
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 9.7e-90 333.6 182 89.6
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 1.3e-89 333.2 182 89.0
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 1.7e-89 332.8 176 92.0
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 1.7e-89 332.8 182 88.5
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 1.7e-89 332.8 182 90.7
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 1.7e-89 332.8 182 88.5
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 1.7e-89 332.8 182 88.5
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 2.2e-89 332.4 182 88.5
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 2.8e-89 332.0 182 88.5
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 2.8e-89 332.0 182 88.5
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 3.7e-89 331.6 178 90.4
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 6.3e-89 330.9 182 87.9
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 1.1e-88 330.1 182 88.5
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.1e-88 330.1 176 90.9
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 1.8e-88 329.3 182 89.6
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 2.4e-88 328.9 202 82.7
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 2.4e-88 328.9 181 86.7
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 3.1e-88 328.6 176 92.0
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 4.1e-88 328.2 176 90.3
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 5.3e-88 327.8 182 86.3
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 5.3e-88 327.8 182 86.8
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 1.2e-87 326.6 172 92.4
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 4.5e-87 324.7 179 87.2
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 1.0e-86 323.6 173 90.2
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 1.3e-86 323.2 194 82.5
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.3e-86 323.2 172 92.4
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 1.7e-86 322.8 182 86.3
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 2.2e-86 322.4 179 87.2
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 2.9e-86 322.0 182 85.7
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 3.8e-86 321.6 182 85.7
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 3.8e-86 321.6 173 90.2
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 3.8e-86 321.6 178 87.1
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 6.5e-86 320.9 182 85.2
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 1.1e-85 320.1 182 84.6
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 2.5e-85 318.9 178 87.1
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 4.2e-85 318.2 182 84.6
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 1.2e-84 316.6 176 86.4
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 1.2e-84 316.6 182 84.1
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 4.7e-84 314.7 182 83.5
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 1.4e-83 313.2 177 85.3
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 2.3e-83 312.4 182 81.9
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 1.1e-82 310.1 178 87.6
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 2.2e-81 305.8 182 83.5
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 2.2e-81 305.8 174 84.5
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 2.2e-81 305.8 174 84.5
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 2.2e-81 305.8 174 84.5
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 3.7e-81 305.1 174 84.5
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 4.8e-81 304.7 173 85.0
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 8.2e-81 303.9 174 83.9
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 1.8e-80 302.8 182 85.2
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 2.4e-80 302.4 208 75.5
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 3.2e-77 292.0 155 93.5
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 6.1e-76 287.7 182 79.1
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 8.0e-76 287.3 155 90.3
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.4e-75 286.6 182 78.6
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 3.0e-75 285.4 183 79.2
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 5.2e-75 284.6 153 87.6
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 7.5e-74 280.8 177 79.1
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 1.3e-73 280.0 151 91.4
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 4.8e-73 278.1 149 87.9
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 3.5e-71 271.9 155 84.5
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 1.9e-69 266.2 155 83.9
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 1.2e-68 263.5 181 75.7
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 4.4e-66 255.0 139 85.6
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 7.5e-66 254.2 184 75.0
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 2.4e-64 249.2 130 91.5
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 4.5e-63 245.0 127 91.3
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 5.6e-61 238.0 126 88.1
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 8.9e-59 230.7 184 59.8
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 9.8e-58 227.3 181 68.0
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 2.0e-55 219.5 183 56.8
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 5.0e-54 214.9 185 57.8
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 4.4e-50 201.8 105 91.4
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 1.3e-49 200.3 105 91.4
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 3.7e-49 198.7 105 89.5
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 2.4e-48 196.1 105 88.6
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 1.7e-46 189.9 100 89.0
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 1.6e-44 183.3 179 58.7
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 3.6e-44 182.2 100 88.0
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 3.7e-41 172.2 154 61.7
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 5.4e-40 168.3 92 88.0
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 6.0e-39 164.9 92 84.8
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.3e-38 163.7 86 89.5
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 1.9e-37 159.8 91 79.1
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 2.9e-33 146.0 127 57.5
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 3.5e-31 139.0 87 78.2
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 7.8e-31 137.9 92 76.1
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 1.2e-28 130.6 66 90.9
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.7e-25 120.2 70 88.6
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 6.4e-25 118.2 77 77.9
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 2.2e-17 93.2 48 87.5
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 1.5e-13 80.5 49 79.6
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.6e-12 77.0 182 30.8
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 4.8e-12 75.5 182 29.7
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 4.8e-12 75.5 182 29.1
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 8.1e-12 74.7 182 29.7
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 1.8e-11 73.6 52 63.5
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 9.0e-11 71.2 182 27.5
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.5e-10 70.5 182 28.0
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 3.4e-10 69.3 181 27.1
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 9.9e-10 67.8 179 27.9
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 2.2e-09 66.6 180 31.1
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 4.9e-09 65.5 201 26.4
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 7.1e-08 61.6 137 29.2


User provided reference genes

Program Settings