Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 5.4e-251 870.5 444 100.0
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 1.2e-223 779.6 444 88.7
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 1.8e-214 749.2 445 87.4
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 7.9e-210 733.8 444 85.1
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 5.6e-208 727.6 448 84.6
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 3.7e-207 724.9 444 85.1
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 1.1e-206 723.4 444 83.1
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 2.4e-206 722.2 448 83.9
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 9.0e-206 720.3 444 83.8
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 2.0e-205 719.2 444 83.6
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 4.5e-205 718.0 444 82.7
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.3e-204 716.5 444 82.4
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.3e-204 716.5 447 82.8
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 2.9e-204 715.3 446 84.1
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 3.8e-204 714.9 444 83.8
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 6.4e-204 714.1 444 81.3
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 6.4e-204 714.1 444 82.0
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 8.4e-204 713.8 446 83.4
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 8.4e-204 713.8 442 82.8
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 1.4e-203 713.0 435 84.1
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.4e-203 713.0 442 82.6
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.4e-203 712.2 447 82.1
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 4.2e-203 711.4 444 83.1
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 7.1e-203 710.7 445 83.1
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 9.3e-203 710.3 445 82.9
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.1e-202 709.1 444 82.4
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 2.7e-202 708.8 443 82.4
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 4.6e-202 708.0 445 81.3
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 4.6e-202 708.0 442 83.7
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 4.6e-202 708.0 445 81.3
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.0e-201 706.8 444 82.2
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.0e-201 706.8 444 81.3
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.3e-201 706.4 442 82.1
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.3e-201 705.7 442 83.7
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.0e-201 705.3 442 83.5
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 5.1e-201 704.5 446 82.3
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 6.7e-201 704.1 444 82.7
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 6.7e-201 704.1 399 88.2
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 1.1e-200 703.4 441 81.4
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.5e-200 703.0 444 81.8
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 1.9e-200 702.6 444 81.3
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 5.6e-200 701.0 443 80.8
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 1.3e-199 699.9 446 82.1
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 3.7e-199 698.4 445 81.1
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 8.2e-199 697.2 442 80.8
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 8.2e-199 697.2 442 80.8
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 8.2e-199 697.2 444 80.6
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 8.2e-199 697.2 444 81.3
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 1.1e-198 696.8 405 86.9
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.4e-198 695.7 405 86.4
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 4.0e-198 694.9 435 82.1
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 5.3e-198 694.5 444 79.7
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 9.0e-198 693.7 399 87.7
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 1.2e-197 693.3 443 80.1
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.5e-197 693.0 444 79.7
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.6e-197 692.2 444 80.0
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 3.4e-197 691.8 423 83.2
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 4.5e-197 691.4 439 81.3
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 7.6e-197 690.6 442 80.5
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.0e-196 690.3 443 80.1
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 1.3e-196 689.9 444 80.9
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.3e-196 689.9 444 80.2
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.3e-196 689.9 403 86.1
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.2e-196 689.1 404 85.9
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.9e-196 688.7 442 79.9
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 3.8e-196 688.3 397 87.2
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 4.9e-196 688.0 425 83.5
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 1.9e-195 686.0 446 80.0
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 5.5e-195 684.5 442 79.9
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 9.3e-195 683.7 441 80.7
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 2.7e-194 682.2 442 79.6
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 4.6e-194 681.4 444 79.7
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 1.3e-193 679.9 398 86.9
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.8e-193 679.5 427 81.0
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.1e-192 676.8 442 77.8
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 1.6e-191 672.9 431 80.3
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 2.8e-191 672.2 441 78.2
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 6.3e-191 671.0 442 78.5
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 6.3e-191 671.0 423 81.1
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 1.8e-190 669.5 435 78.2
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 1.8e-190 669.5 442 78.3
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 1.5e-189 666.4 446 76.5
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.5e-189 666.4 442 79.0
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 4.5e-189 664.8 442 78.7
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 5.9e-189 664.5 442 78.3
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.3e-188 663.3 396 83.1
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 2.2e-188 662.5 442 78.5
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 2.2e-188 662.5 442 78.5
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.9e-188 662.1 396 82.8
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 6.5e-188 661.0 442 78.1
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 6.5e-188 661.0 444 76.6
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 8.5e-188 660.6 442 77.6
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 8.5e-188 660.6 442 77.6
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 1.9e-187 659.4 442 78.3
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.9e-187 659.4 387 85.0
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 5.5e-187 657.9 443 77.7
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 7.2e-187 657.5 442 78.1
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 9.4e-187 657.1 441 76.9
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 9.4e-187 657.1 396 84.3
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 2.1e-186 656.0 443 77.4
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 6.1e-186 654.4 428 79.0
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 1.0e-185 653.7 428 79.0
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 5.1e-185 651.4 440 77.7
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 5.1e-185 651.4 440 77.7
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 3.3e-184 648.7 416 79.8
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 7.4e-184 647.5 396 83.1
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 7.4e-184 647.5 396 83.1
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.1e-182 643.7 391 83.6
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 9.1e-182 640.6 380 83.2
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.3e-180 636.7 442 76.5
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.2e-180 636.0 486 70.2
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 8.5e-180 634.0 421 76.0
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 1.1e-179 633.6 421 76.2
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.9e-179 632.9 401 79.1
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 2.5e-179 632.5 388 81.7
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.0e-177 627.1 421 76.5
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.0e-176 622.9 435 74.0
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 1.4e-174 616.7 488 67.6
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 7.7e-173 610.9 383 82.0
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 5.0e-172 608.2 440 74.1
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.4e-171 606.7 446 73.3
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.2e-160 570.5 370 80.3
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.1e-158 563.9 393 75.8
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 7.2e-155 551.2 403 69.2
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 2.0e-152 543.1 307 89.6
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 2.0e-152 543.1 345 80.3
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 5.7e-152 541.6 404 67.8
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 1.1e-147 527.3 371 68.7
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.4e-145 520.4 366 68.9
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 5.7e-144 515.0 404 64.9
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.7e-143 512.3 377 67.1
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.7e-143 512.3 377 67.1
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 7.0e-142 508.1 366 67.5
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 7.0e-142 508.1 370 68.4
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 7.0e-142 508.1 361 71.5
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 5.9e-141 505.0 379 65.4
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 7.8e-141 504.6 389 66.3
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 6.6e-140 501.5 381 66.1
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.2e-138 497.3 364 65.4
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 4.0e-137 492.3 397 60.2
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.0e-132 477.6 397 59.2
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.3e-132 477.2 317 78.5
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 6.8e-129 464.9 360 63.6
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 3.0e-116 422.9 365 60.8
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 4.8e-98 362.5 366 54.4
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 3.2e-94 349.7 302 61.6
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 4.3e-83 312.8 226 71.2
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.4e-70 271.2 328 45.4
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 2.1e-69 267.3 204 73.0
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 7.9e-61 238.8 157 80.9
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 2.3e-60 237.3 123 90.2
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 4.4e-59 233.0 198 60.6
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 2.6e-56 223.8 159 71.1
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.1e-41 173.7 162 54.9
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 2.7e-37 160.6 119 68.1
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.2e-35 155.2 111 75.7
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 2.4e-33 147.5 132 60.6
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 2.9e-31 140.6 112 63.4
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 4.2e-30 136.7 82 84.1
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.3e-26 125.2 80 70.0
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 1.4e-20 105.1 144 47.2
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 2.6e-19 100.9 51 88.2
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.0e-15 89.0 94 51.1
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 1.0e-07 62.4 35 85.7


User provided reference genes

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