Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4482 Avicennia marina HOM05D007161 ORTHO05D009103 8.0e-65 250.8 175 100.0
MSTRG.9598 Avicennia marina HOM05D007161 ORTHO05D009103 2.3e-43 179.5 175 76.6
Dinv22772 Davidia involucrata HOM05D007161 ORTHO05D009103 3.3e-42 175.6 166 76.5
Ciclev10022373m.g Citrus clementina HOM05D007161 ORTHO05D009103 3.6e-41 172.2 169 75.7
Nitab4.5_0001485g0090 Nicotiana tabacum HOM05D007161 ORTHO05D009103 6.1e-41 171.4 164 78.7
CAN.G1228.16 Capsicum annuum HOM05D007161 ORTHO05D009103 1.0e-40 170.6 173 74.0
Sopen03g034090 Solanum pennellii HOM05D007161 ORTHO05D009103 1.7e-38 163.3 167 75.4
QL10p019814 Quercus lobata HOM05D007161 ORTHO05D009103 2.9e-38 162.5 166 72.9
Haze_07737 Corylus avellana HOM05D007161 ORTHO05D009103 3.7e-38 162.2 165 73.3
GSVIVG01008106001 Vitis vinifera HOM05D007161 ORTHO05D009103 2.4e-37 159.5 158 75.9
Cfa019345 Carpinus fangiana HOM05D007161 ORTHO05D009103 3.2e-37 159.1 165 72.7
Manes.06G083700 Manihot esculenta HOM05D007161 ORTHO05D009103 2.0e-36 156.4 160 73.8
Oeu017188.1 Olea europaea HOM05D007161 ORTHO05D009103 2.0e-36 156.4 143 83.9
PGSC0003DMG400024633 Solanum tuberosum HOM05D007161 ORTHO05D009103 2.0e-36 156.4 167 73.7
TAR629G0203 Trochodendron aralioides HOM05D007161 ORTHO05D009103 7.8e-36 154.5 168 72.0
CANSAT56G0131 Cannabis sativa HOM05D007161 ORTHO05D009103 1.0e-35 154.1 169 72.2
CiPaw.11G054500 Carya illinoinensis HOM05D007161 ORTHO05D009103 1.0e-35 154.1 167 73.7
Eucgr.B00604 Eucalyptus grandis HOM05D007161 ORTHO05D009103 1.0e-35 154.1 166 71.7
Atru.chr9.557 Acer truncatum HOM05D007161 ORTHO05D009103 1.7e-35 153.3 168 71.4
THA.LOC104801155 Tarenaya hassleriana HOM05D007161 ORTHO05D009103 1.7e-35 153.3 175 70.3
PGR083G0667 Punica granatum HOM05D007161 ORTHO05D009103 2.3e-35 152.9 166 70.5
Cc00_g12110 Coffea canephora HOM05D007161 ORTHO05D009103 8.6e-35 151.0 160 71.2
Solyc03g115020.3 Solanum lycopersicum HOM05D007161 ORTHO05D009103 8.6e-35 151.0 164 74.4
MELO3C002036.2 Cucumis melo HOM05D007161 ORTHO05D009103 1.1e-34 150.6 168 73.8
Potri.015G058600 Populus trichocarpa HOM05D007161 ORTHO05D009103 1.5e-34 150.2 160 73.1
CsaV3_1G006050 Cucumis sativus L. HOM05D007161 ORTHO05D009103 1.9e-34 149.8 168 72.6
Nn4g23440 Nelumbo nucifera HOM05D007161 ORTHO05D009103 4.7e-33 145.2 173 67.6
Glyma.04G161600 Glycine max HOM05D007161 ORTHO05D009103 6.2e-33 144.8 164 70.7
Hund02576 Selenicereus undatus HOM05D007161 ORTHO05D009103 1.0e-32 144.1 165 69.1
Phvul.009G202100 Phaseolus vulgaris HOM05D007161 ORTHO05D009103 1.8e-32 143.3 165 70.3
ClCG04G011740 Citrullus lanatus HOM05D007161 ORTHO05D009103 2.3e-32 142.9 173 70.5
Thecc.03G103000 Theobroma cacao HOM05D007161 ORTHO05D009103 4.0e-32 142.1 169 72.2
Sed0004238 Sechium edule HOM05D007161 ORTHO05D009103 8.9e-32 141.0 166 72.3
COL.COLO4_24339 Corchorus olitorius HOM05D007161 ORTHO05D009103 1.2e-31 140.6 162 73.5
Glyma.06G204200 Glycine max HOM05D007161 ORTHO05D009103 1.2e-31 140.6 164 69.5
arahy.Tifrunner.gnm1.ann1.KM320G Arachis hypogaea HOM05D007161 ORTHO05D009103 1.5e-31 140.2 167 68.9
arahy.Tifrunner.gnm1.ann1.N0KAAL Arachis hypogaea HOM05D007161 ORTHO05D009103 1.5e-31 140.2 167 68.3
Gohir.A07G068000 Gossypium hirsutum HOM05D007161 ORTHO05D009103 3.4e-31 139.0 170 70.6
Peaxi162Scf00201g00331 Petunia axillaris HOM05D007161 ORTHO05D009103 1.7e-30 136.7 164 70.7
SGA_v2.0_scaffold42G16039 Striga asiatica HOM05D007161 ORTHO05D009103 1.7e-30 136.7 175 69.7
Gohir.D07G072600 Gossypium hirsutum HOM05D007161 ORTHO05D009103 2.9e-30 136.0 170 69.4
Sabra15G0084100 Salix brachista HOM05D007161 ORTHO05D009103 2.9e-30 136.0 175 66.3
SalBow7G4182 Salvia bowleyana HOM05D007161 ORTHO05D009103 2.9e-30 136.0 172 67.4
CSS0009196 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 3.7e-30 135.6 144 75.7
CSS0029825 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 4.9e-30 135.2 137 78.8
CDE05G0262 Ceratophyllum demersum HOM05D007161 ORTHO05D009103 8.3e-30 134.4 176 67.6
ATR0177G008 Amborella trichopoda HOM05D007161 ORTHO05D009103 1.4e-29 133.7 170 68.8
Gorai.001G076800 Gossypium raimondii HOM05D007161 ORTHO05D009103 1.9e-29 133.3 170 68.8
Sc11g0004490 Simmondsia chinensis HOM05D007161 ORTHO05D009103 1.9e-29 133.3 165 67.3
Prupe.5G206100 Prunus persica HOM05D007161 ORTHO05D009103 5.4e-29 131.7 169 68.6
DCAR_011565 Daucus carota HOM05D007161 ORTHO05D009103 7.0e-29 131.3 166 69.3
TWI81G0640 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 2.0e-28 129.8 166 69.9
TWI60G0438 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 2.7e-28 129.4 164 68.9
Ca_14363_v3 Cicer arietinum L. HOM05D007161 ORTHO05D009103 4.6e-28 128.6 164 69.5
Rhsim08G0144900 Rhododendron simsii HOM05D007161 ORTHO05D009103 4.6e-28 128.6 174 63.8
Oeu044879.1 Olea europaea HOM05D007161 ORTHO05D009103 1.3e-27 127.1 143 76.2
vmacro17616 Vaccinium macrocarpon HOM05D007161 ORTHO05D009103 1.7e-27 126.7 185 62.2
Psat5g207080 Pisum sativum HOM05D007161 ORTHO05D009103 2.5e-26 122.9 165 69.7
Duzib084G1357 Durio zibethinus HOM05D007161 ORTHO05D009103 4.3e-26 122.1 151 72.2
MD06G1225900 Malus domestica HOM05D007161 ORTHO05D009103 1.6e-25 120.2 166 68.1
Migut.D01637 Erythranthe guttata HOM05D007161 ORTHO05D009103 2.1e-25 119.8 175 67.4
Ah.02g114100 Amaranthus hybridus HOM05D007161 ORTHO05D009103 1.8e-24 116.7 164 65.9
TPR.G12153 Trifolium pratense HOM05D007161 ORTHO05D009103 1.8e-24 116.7 166 67.5
Nitab4.5_0007356g0010 Nicotiana tabacum HOM05D007161 ORTHO05D009103 3.1e-24 115.9 124 79.8
Lsat_1_v5_gn_5_22381 Lactuca sativa HOM05D007161 ORTHO05D009103 4.0e-24 115.5 162 67.3
BcaB01g05640 Brassica carinata HOM05D007161 ORTHO05D009103 5.2e-24 115.2 173 64.7
ECA246G0920 Erigeron canadensis HOM05D007161 ORTHO05D009103 5.2e-24 115.2 165 65.5
PSO017G0728 Papaver somniferum HOM05D007161 ORTHO05D009103 5.2e-24 115.2 178 62.9
A03p03560 Brassica napus HOM05D007161 ORTHO05D009103 8.9e-24 114.4 173 64.2
BraA03t09706Z Brassica rapa HOM05D007161 ORTHO05D009103 8.9e-24 114.4 173 64.2
CARHR205130 Cardamine hirsuta HOM05D007161 ORTHO05D009103 8.9e-24 114.4 173 61.8
MD14G1212800 Malus domestica HOM05D007161 ORTHO05D009103 8.9e-24 114.4 165 66.1
C03p04010 Brassica napus HOM05D007161 ORTHO05D009103 1.5e-23 113.6 173 64.2
Carub.0006s0694 Capsella rubella HOM05D007161 ORTHO05D009103 1.5e-23 113.6 173 63.0
PSO478G3435 Papaver somniferum HOM05D007161 ORTHO05D009103 2.6e-23 112.8 171 63.7
BolC3t12938H Brassica oleracea HOM05D007161 ORTHO05D009103 3.4e-23 112.5 173 63.0
EL10Ac5g11145 Beta vulgaris HOM05D007161 ORTHO05D009103 4.4e-23 112.1 163 64.4
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 4.4e-23 112.1 168 61.3
RcHm_v2.0_Chr7g0183201 Rosa chinensis HOM05D007161 ORTHO05D009103 5.8e-23 111.7 167 64.1
Medtr3g026020 Medicago truncatula HOM05D007161 ORTHO05D009103 2.2e-22 109.8 165 66.1
Sp6g34900 Schrenkiella parvula HOM05D007161 ORTHO05D009103 2.2e-22 109.8 173 61.8
BcaB01g05681 Brassica carinata HOM05D007161 ORTHO05D009103 3.7e-22 109.0 174 63.8
Os12g0575000 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 4.9e-22 108.6 165 60.0
Aqoxy3G03679 Aquilegia oxysepala HOM05D007161 ORTHO05D009103 6.4e-22 108.2 166 63.9
Os11g0460900 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 5.4e-21 105.1 148 45.9
Lj1g0027416 Lotus japonicus HOM05D007161 ORTHO05D009103 7.1e-21 104.8 168 62.5
Thhalv10014904m.g Eutrema salsugineum HOM05D007161 ORTHO05D009103 1.2e-20 104.0 173 60.7
FAN08G2338 Fragaria x ananassa HOM05D007161 ORTHO05D009103 3.5e-20 102.4 137 70.1
HanXRQChr08g0230491 Helianthus annuus HOM05D007161 ORTHO05D009103 4.6e-20 102.1 156 64.1
AL6G18400 Arabidopsis lyrata HOM05D007161 ORTHO05D009103 6.0e-20 101.7 174 60.3
FAN13G1189 Fragaria x ananassa HOM05D007161 ORTHO05D009103 6.0e-20 101.7 133 71.4
SEGI_08112 Sequoiadendron giganteum HOM05D007161 ORTHO05D009103 6.0e-20 101.7 154 61.0
Aa31LG3G18490 Aethionema arabicum HOM05D007161 ORTHO05D009103 1.0e-19 100.9 173 60.1
Zm00001eb029520 Zea mays HOM05D007161 ORTHO05D009103 1.3e-19 100.5 167 58.1
AT5G08050 Arabidopsis thaliana HOM05D007161 ORTHO05D009103 8.6e-19 97.8 174 59.8
FvH4_5g13740 Fragaria vesca HOM05D007161 ORTHO05D009103 1.1e-18 97.4 128 71.1
FAN18G1870 Fragaria x ananassa HOM05D007161 ORTHO05D009103 1.1e-18 97.4 128 71.1
HanXRQChr17g0550221 Helianthus annuus HOM05D007161 ORTHO05D009103 3.3e-18 95.9 67 74.6
Lj5C102G4 Lonicera japonica HOM05D007161 ORTHO05D009103 3.3e-18 95.9 168 60.7
Lalb_Chr12g0199331 Lupinus albus HOM05D007161 ORTHO05D009103 7.3e-18 94.7 164 59.8
AUR62008547 Chenopodium quinoa HOM05D007161 ORTHO05D009103 2.8e-17 92.8 144 63.9
AUR62021546 Chenopodium quinoa HOM05D007161 ORTHO05D009103 1.1e-16 90.9 119 71.4
Actinidia04818 Actinidia chinensis HOM05D007161 ORTHO05D009103 1.4e-16 90.5 132 65.9
Peaxi162Scf00009g00010 Petunia axillaris HOM05D007161 ORTHO05D009103 1.5e-15 87.0 118 57.6
Mapoly0107s0029 Marchantia polymorpha HOM05D007161 ORTHO05D009103 3.7e-14 82.4 126 68.3
SMO139G0085 Selaginella moellendorffii HOM05D007161 ORTHO05D009103 3.2e-13 79.3 146 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2890 Anthoceros agrestis HOM05D007161 ORTHO05D009103 7.1e-13 78.2 145 60.0
unitig_0.g5 Utricularia gibba HOM05D000887 ORTHO05D000908 1.7e-11 73.6 129 65.1
Pp3c1_19210 Physcomitrium patens HOM05D007161 ORTHO05D009103 3.9e-11 72.4 152 55.9


User provided reference genes

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