Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 3.8e-143 511.5 266 100.0
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 2.9e-103 379.0 238 81.9
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 3.9e-95 352.1 238 77.3
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 8.9e-92 340.9 258 72.1
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 8.3e-90 334.3 256 71.5
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 8.6e-87 324.3 235 69.8
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 3.4e-83 312.4 233 70.8
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.1e-80 303.1 240 66.7
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 5.1e-79 298.5 241 67.2
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.1e-78 297.4 241 66.8
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 1.5e-78 297.0 245 64.9
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.9e-78 296.6 241 66.8
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 8.1e-77 291.2 248 64.5
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 1.4e-76 290.4 241 65.1
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.8e-76 290.0 240 64.2
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.8e-76 290.0 240 63.8
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.8e-76 290.0 243 64.2
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 4.0e-76 288.9 257 63.0
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 6.8e-76 288.1 239 66.5
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.5e-75 287.0 239 66.5
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.3e-74 283.9 241 63.9
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 6.4e-74 281.6 243 63.0
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 6.4e-74 281.6 243 64.2
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 2.4e-73 279.6 243 63.0
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 5.4e-73 278.5 246 63.8
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 9.2e-73 277.7 243 62.6
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.7e-72 276.2 243 62.6
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 3.5e-72 275.8 240 62.1
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.0e-71 274.2 248 60.5
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.3e-71 273.9 243 63.4
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 3.9e-71 272.3 244 62.3
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 2.5e-70 269.6 244 61.9
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.8e-69 266.2 241 61.4
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.8e-69 266.2 247 58.7
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 4.7e-69 265.4 247 60.7
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 4.7e-69 265.4 242 61.6
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 1.4e-68 263.8 238 60.1
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.8e-68 263.5 245 60.4
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 5.2e-68 261.9 250 56.4
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 5.2e-68 261.9 243 57.6
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 6.9e-68 261.5 243 58.8
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.5e-67 260.4 239 61.1
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 2.0e-67 260.0 246 57.7
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 7.6e-67 258.1 251 56.6
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 9.9e-67 257.7 245 59.6
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 9.9e-67 257.7 245 59.6
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.3e-66 257.3 243 58.8
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.3e-66 257.3 242 57.4
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.2e-66 256.5 238 57.6
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 2.2e-66 256.5 234 60.3
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.2e-66 256.5 241 59.3
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.9e-66 256.1 249 56.2
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 3.8e-66 255.8 242 56.2
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 4.9e-66 255.4 243 56.4
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.4e-65 253.8 220 61.8
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.4e-65 253.1 249 57.4
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.2e-65 252.7 198 65.2
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 3.2e-65 252.7 248 54.8
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 4.2e-65 252.3 241 58.9
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 5.4e-65 251.9 273 53.1
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 7.1e-65 251.5 231 59.7
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 7.1e-65 251.5 249 57.0
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 7.1e-65 251.5 249 57.0
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 9.3e-65 251.1 245 56.7
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 9.3e-65 251.1 237 57.0
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.2e-64 250.8 241 58.1
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.2e-64 250.8 241 58.5
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.2e-64 250.8 241 58.5
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 1.6e-64 250.4 238 57.1
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.6e-64 250.4 243 59.7
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 2.1e-64 250.0 242 58.7
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 2.1e-64 250.0 248 55.6
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 2.7e-64 249.6 240 57.9
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 3.5e-64 249.2 190 66.3
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 3.5e-64 249.2 245 56.7
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 3.5e-64 249.2 236 56.8
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 4.6e-64 248.8 241 58.9
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.6e-64 248.8 175 69.7
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 7.8e-64 248.1 242 56.2
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.8e-64 248.1 241 56.8
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.8e-64 248.1 241 56.8
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 1.3e-63 247.3 239 57.7
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-63 247.3 241 58.5
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.3e-63 247.3 241 58.5
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.3e-63 247.3 252 54.8
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.7e-63 246.9 186 67.2
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 2.3e-63 246.5 180 67.2
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 3.0e-63 246.1 242 56.2
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.9e-63 245.7 180 67.2
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 5.1e-63 245.4 241 58.1
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 5.1e-63 245.4 180 66.7
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 8.7e-63 244.6 250 54.0
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 8.7e-63 244.6 251 53.8
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.1e-62 244.2 242 55.4
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.5e-62 243.8 239 54.8
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.9e-62 243.4 240 55.0
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 2.5e-62 243.0 238 56.3
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 4.3e-62 242.3 242 56.2
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 5.6e-62 241.9 250 56.4
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 5.6e-62 241.9 244 53.7
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 7.3e-62 241.5 178 68.0
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 7.3e-62 241.5 244 53.3
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 9.6e-62 241.1 248 53.6
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 3.6e-61 239.2 234 56.0
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 4.8e-61 238.8 237 55.7
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.8e-60 236.9 234 56.4
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 5.3e-60 235.3 242 54.5
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 3.4e-59 232.6 194 58.2
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 7.6e-59 231.5 175 65.1
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.3e-58 230.7 175 63.4
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.3e-58 230.7 175 63.4
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.7e-58 230.3 242 55.0
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 1.1e-57 227.6 259 48.3
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.9e-57 226.9 214 56.5
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 4.2e-57 225.7 259 47.5
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 9.3e-57 224.6 197 59.4
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.6e-56 223.8 233 49.8
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.1e-56 223.4 163 66.3
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 4.6e-56 222.2 234 54.7
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.6e-56 222.2 151 71.5
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 6.0e-56 221.9 180 61.7
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 2.3e-55 219.9 244 52.9
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 2.3e-55 219.9 244 51.2
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.1e-55 218.8 160 66.2
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 5.6e-54 215.3 230 55.2
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 7.4e-54 214.9 163 61.3
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.1e-53 213.4 147 69.4
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 4.8e-53 212.2 172 58.1
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 6.2e-53 211.8 172 59.3
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 6.2e-53 211.8 172 58.1
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 4.0e-52 209.1 222 54.1
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.4e-49 200.7 202 51.5
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 3.2e-49 199.5 172 55.2
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 9.3e-49 198.0 230 51.7
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 4.6e-48 195.7 257 45.5
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 6.0e-48 195.3 172 54.1
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.0e-47 193.0 215 47.0
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.5e-46 189.9 193 53.9
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 2.1e-45 186.8 163 61.3
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 6.2e-45 185.3 231 47.2
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-41 174.1 132 59.8
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 6.7e-39 165.2 158 58.9
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 4.3e-38 162.5 112 67.9
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.0e-36 154.8 147 55.1
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.9e-34 149.8 223 40.4
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.4e-31 141.0 161 44.1
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 3.0e-31 139.8 206 39.3
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 2.5e-30 136.7 174 43.1
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 2.5e-30 136.7 110 58.2
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 2.4e-28 130.2 202 37.1
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.4e-20 103.6 76 61.8
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.0e-18 98.2 161 41.6
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 8.0e-16 88.6 86 47.7
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 5.2e-15 85.9 104 53.8
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 3.7e-13 79.7 74 48.6
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 8.8e-07 58.5 58 50.0
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 8.8e-07 58.5 58 50.0


User provided reference genes

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