Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 1.0e-48 196.4 100 100.0
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 1.5e-39 166.0 100 84.0
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.4e-37 158.7 101 80.2
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.4e-37 158.7 101 80.2
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 4.0e-37 157.9 100 77.0
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 1.2e-36 156.4 100 79.0
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 1.2e-36 156.4 100 79.0
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 2.6e-36 155.2 101 80.2
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 5.8e-36 154.1 100 77.0
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 7.6e-36 153.7 100 80.0
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 2.9e-35 151.8 100 75.0
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 3.8e-35 151.4 100 76.0
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 3.8e-35 151.4 100 77.0
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 6.4e-35 150.6 101 76.2
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 8.4e-35 150.2 94 80.9
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.1e-34 149.8 99 76.8
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 1.6e-33 146.0 100 74.0
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 1.6e-33 146.0 96 77.1
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 2.7e-33 145.2 97 78.4
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 2.7e-33 145.2 108 72.2
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 3.9e-32 141.4 100 72.0
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 6.6e-32 140.6 97 72.2
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 8.7e-32 140.2 100 69.0
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 3.3e-31 138.3 95 75.8
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 4.3e-31 137.9 99 71.7
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 7.3e-31 137.1 99 70.7
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 1.6e-30 136.0 101 69.3
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.1e-30 135.6 96 71.9
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 3.6e-30 134.8 97 75.3
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 3.6e-30 134.8 97 68.0
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 6.2e-30 134.0 103 69.9
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 8.1e-30 133.7 101 70.3
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 8.1e-30 133.7 96 69.8
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.4e-29 132.9 103 68.0
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.4e-29 132.9 98 68.4
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 1.8e-29 132.5 97 74.2
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 1.8e-29 132.5 96 69.8
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.8e-29 132.5 95 67.4
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 2.4e-29 132.1 102 67.6
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 2.4e-29 132.1 96 67.7
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 2.4e-29 132.1 95 70.5
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 2.4e-29 132.1 98 70.4
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 3.1e-29 131.7 96 71.9
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 3.1e-29 131.7 99 64.6
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 6.9e-29 130.6 95 69.5
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 6.9e-29 130.6 101 69.3
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 9.0e-29 130.2 98 64.3
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 1.2e-28 129.8 93 72.0
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 1.2e-28 129.8 96 66.7
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 2.0e-28 129.0 100 69.0
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 2.6e-28 128.6 98 68.4
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 4.4e-28 127.9 95 67.4
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 4.4e-28 127.9 89 68.5
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 5.8e-28 127.5 95 68.4
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 1.3e-27 126.3 92 70.7
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 1.3e-27 126.3 96 65.6
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 1.7e-27 125.9 95 69.5
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 2.2e-27 125.6 92 72.8
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 2.2e-27 125.6 97 67.0
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 2.2e-27 125.6 103 68.0
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 2.2e-27 125.6 97 64.9
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 2.9e-27 125.2 93 68.8
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 4.9e-27 124.4 94 67.0
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 6.4e-27 124.0 99 66.7
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 6.4e-27 124.0 95 67.4
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 6.4e-27 124.0 99 63.6
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 8.4e-27 123.6 95 67.4
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 1.1e-26 123.2 96 64.6
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 1.4e-26 122.9 91 67.0
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 1.4e-26 122.9 91 67.0
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 1.4e-26 122.9 91 67.0
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.4e-26 122.9 92 66.3
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.4e-26 122.9 95 63.2
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 1.4e-26 122.9 98 65.3
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 2.4e-26 122.1 95 68.4
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 3.2e-26 121.7 96 65.6
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 5.4e-26 120.9 93 68.8
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 5.4e-26 120.9 95 63.2
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 7.1e-26 120.6 96 64.6
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 9.3e-26 120.2 93 65.6
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 1.6e-25 119.4 101 62.4
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 2.1e-25 119.0 94 63.8
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 2.1e-25 119.0 93 61.3
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 2.7e-25 118.6 93 68.8
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 2.7e-25 118.6 93 68.8
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 2.7e-25 118.6 94 63.8
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 6.0e-25 117.5 95 63.2
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 6.0e-25 117.5 95 63.2
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 6.0e-25 117.5 95 63.2
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 7.8e-25 117.1 91 64.8
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 7.8e-25 117.1 94 62.8
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 7.8e-25 117.1 100 59.0
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.0e-24 116.7 77 79.2
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.0e-24 116.7 77 79.2
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 1.3e-24 116.3 93 66.7
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 1.3e-24 116.3 93 66.7
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 1.3e-24 116.3 92 64.1
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.3e-24 116.3 95 62.1
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 2.3e-24 115.5 96 64.6
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 3.0e-24 115.2 95 62.1
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 3.9e-24 114.8 93 65.6
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 5.1e-24 114.4 75 74.7
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 5.1e-24 114.4 95 63.2
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 8.7e-24 113.6 96 60.4
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 1.9e-23 112.5 92 66.3
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 1.9e-23 112.5 91 63.7
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.9e-23 112.5 77 68.8
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 3.3e-23 111.7 95 61.1
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 7.3e-23 110.5 89 60.7
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 9.6e-23 110.2 95 60.0
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 2.1e-22 109.0 138 53.6
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 3.6e-22 108.2 93 61.3
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 5.3e-21 104.4 77 62.3
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 1.5e-20 102.8 93 52.7
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 2.6e-20 102.1 94 55.3
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 7.6e-20 100.5 65 70.8
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 2.9e-19 98.6 65 75.4
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 4.9e-19 97.8 94 53.2
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 6.4e-19 97.4 75 70.7
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 4.2e-18 94.7 104 51.9
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 1.2e-17 93.2 104 50.0
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 1.6e-17 92.8 72 61.1
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 1.6e-17 92.8 77 66.2
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 2.1e-17 92.4 78 64.1
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 1.0e-16 90.1 76 65.8
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.9e-15 85.9 90 51.1
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 2.5e-15 85.5 80 51.2
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 4.3e-15 84.7 73 60.3
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 4.3e-15 84.7 101 45.5
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 4.3e-15 84.7 87 56.3
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 5.6e-15 84.3 97 52.6
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 2.1e-14 82.4 64 60.9
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 4.8e-14 81.3 91 52.7
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 1.1e-13 80.1 91 49.5
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 1.8e-13 79.3 87 55.2
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.4e-10 69.7 61 54.1
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 1.4e-10 69.7 57 57.9
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 1.9e-10 69.3 55 60.0
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 3.2e-10 68.6 54 59.3
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 3.2e-10 68.6 58 55.2
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 4.2e-10 68.2 61 57.4
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 1.6e-09 66.2 50 60.0
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 6.7e-08 60.8 55 54.5
AagrBONN_evm.TU.Sc2ySwM_362.1955 Anthoceros agrestis HOM05D005070 ORTHO05D005987 1.1e-07 60.1 71 43.7
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 1.9e-07 59.3 70 44.3
Cpa.g.c35589.2 Carica papaya HOM05D005070 ORTHO05D005987 4.3e-07 58.2 41 73.2
CBR_g34554 Chara braunii HOM05D005070 ORTHO05D005987 4.3e-07 58.2 49 59.2
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 3.7e-06 55.1 34 76.5


User provided reference genes

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