Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 0.0e+00 2926.3 1541 100.0
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 0.0e+00 1467.6 1602 55.7
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 0.0e+00 1466.4 1605 55.8
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 0.0e+00 1429.5 1621 56.1
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 2.2e-299 1033.1 1614 46.7
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 4.9e-291 1005.4 1618 43.8
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 5.4e-282 975.3 1629 42.5
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 2.0e-268 930.2 1662 42.1
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 1.9e-258 897.1 1720 39.1
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.2e-244 851.3 1623 39.9
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 4.9e-243 845.9 1644 40.2
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 4.2e-242 842.8 1624 40.5
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 2.5e-239 833.6 1695 38.6
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.8e-237 827.4 1645 39.1
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.4e-229 801.2 1637 39.1
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 1.4e-229 801.2 1646 38.9
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 5.3e-229 799.3 1619 38.4
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 1.2e-228 798.1 1627 39.0
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 3.0e-224 783.5 1610 38.6
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 1.8e-216 757.7 1625 39.0
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 2.3e-216 757.3 1589 39.2
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 5.1e-216 756.1 1633 39.1
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 1.1e-215 755.0 1647 37.3
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 4.3e-215 753.1 1639 37.7
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.7e-214 751.1 1638 37.8
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 8.2e-214 748.8 1639 37.7
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 5.5e-210 736.1 1644 37.8
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 7.2e-210 735.7 1654 38.3
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 1.5e-207 728.0 1653 36.8
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 5.3e-205 719.5 1647 36.7
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 2.5e-202 710.7 1631 36.5
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 3.6e-201 706.8 1622 37.3
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 1.4e-200 704.9 1689 35.8
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 6.7e-200 702.6 1635 36.6
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 1.5e-199 701.4 1687 36.6
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 1.5e-199 701.4 1627 37.3
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 6.3e-198 696.0 1657 36.9
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 1.8e-197 694.5 1731 35.6
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 2.4e-197 694.1 1666 36.9
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 3.1e-197 693.7 1634 36.8
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 7.0e-197 692.6 1658 36.1
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.0e-196 691.0 1631 36.1
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 1.0e-195 688.7 1636 36.7
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 1.7e-195 688.0 1655 36.8
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 2.2e-195 687.6 1675 36.5
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 2.9e-195 687.2 1669 36.4
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 8.5e-195 685.6 1640 36.6
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 8.5e-195 685.6 1666 35.3
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 1.5e-191 674.9 1677 36.3
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 9.8e-191 672.2 1650 39.0
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 4.8e-190 669.8 1612 36.3
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.0e-187 662.1 1627 35.9
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 2.2e-187 661.0 1287 39.5
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 2.2e-187 661.0 1689 35.1
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.9e-187 660.6 1634 35.6
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.1e-186 658.7 1640 35.2
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.6e-185 654.8 1633 35.5
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.2e-183 648.7 1624 34.0
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 8.3e-182 642.5 1655 35.8
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 9.5e-178 629.0 1680 33.5
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 2.0e-175 621.3 1637 34.4
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 1.3e-174 618.6 1628 36.1
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 1.4e-173 615.1 1643 35.2
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 7.8e-172 609.4 1661 33.6
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 2.5e-170 604.4 1371 37.1
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 5.6e-170 603.2 1637 34.8
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 9.5e-170 602.4 1703 34.2
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 2.8e-169 600.9 1622 34.3
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 3.6e-169 600.5 1622 36.1
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 5.8e-167 593.2 1632 34.6
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 2.9e-166 590.9 1634 36.4
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 5.8e-159 566.6 1439 34.7
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 6.4e-158 563.1 1623 33.6
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 3.2e-157 560.8 1619 33.3
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.3e-155 555.4 1613 33.0
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 3.0e-155 554.3 1634 32.9
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 1.1e-154 552.4 1605 35.1
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 1.9e-154 551.6 1636 32.7
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.2e-148 532.3 1556 33.2
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 6.0e-148 530.0 1602 32.0
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 2.5e-146 524.6 1623 33.3
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.8e-144 518.5 1196 36.9
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 9.3e-141 506.1 1769 30.6
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.2e-140 505.8 1614 32.7
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 3.5e-140 504.2 1657 31.6
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.3e-139 502.3 1628 32.6
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 1.5e-135 488.8 1629 34.1
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 2.2e-134 485.0 1220 36.5
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 2.3e-131 474.9 1634 31.7
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 2.8e-129 468.0 1671 32.0
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 6.2e-129 466.8 1620 32.2
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 3.1e-128 464.5 1413 33.1
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 5.8e-127 460.3 1583 31.4
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 6.7e-123 446.8 1727 30.8
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 9.6e-122 443.0 1727 30.6
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 6.2e-121 440.3 1579 30.8
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 8.1e-121 439.9 1583 30.8
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 1.4e-120 439.1 1593 31.5
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 6.9e-120 436.8 1555 32.3
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 2.6e-119 434.9 1614 30.7
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 3.9e-115 421.0 1385 33.0
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 7.4e-114 416.8 1634 30.8
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 1.3e-113 416.0 793 40.0
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 1.5e-111 409.1 1611 29.9
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 6.1e-108 397.1 1009 35.4
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 3.0e-107 394.8 1614 29.5
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 3.0e-107 394.8 1673 29.3
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 2.5e-106 391.7 1594 29.9
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 6.3e-105 387.1 1593 29.7
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 8.2e-105 386.7 716 40.2
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 2.4e-104 385.2 1587 29.9
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 2.4e-104 385.2 1588 29.9
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 4.1e-104 384.4 1232 31.5
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 6.9e-104 383.6 1647 28.8
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 4.5e-103 380.9 1235 31.3
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 5.9e-103 380.6 1591 29.3
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 8.5e-102 376.7 1699 29.0
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 1.9e-101 375.6 1588 28.9
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 2.7e-100 371.7 1613 29.9
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 2.5e-98 365.2 1246 31.3
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 2.2e-86 325.5 1211 29.4
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.2e-86 325.5 1506 29.0
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.4e-72 277.7 700 35.6
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 3.5e-71 275.0 1370 27.2
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.5e-71 274.6 334 51.2
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 1.0e-51 210.3 1559 25.6
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 8.9e-51 207.2 1416 26.2
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 4.6e-47 194.9 1444 28.0
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 3.9e-46 191.8 1647 25.6
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.2e-44 186.8 1585 24.5
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.1e-43 183.7 470 34.9
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 2.2e-41 176.0 193 57.0
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 4.9e-41 174.9 482 32.8
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.4e-40 172.6 206 55.3
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.1e-37 163.7 1458 24.9
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 6.6e-30 137.9 203 44.3
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 1.2e-28 133.7 687 28.1
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 5.2e-27 128.3 215 52.1
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.4e-26 125.6 383 32.1
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 6.4e-25 121.3 1832 23.0
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.5e-21 110.2 1459 23.4
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 7.1e-16 91.3 188 38.8
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 2.7e-15 89.4 831 26.7
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 6.0e-15 88.2 83 61.4
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.8e-14 86.7 180 37.8
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 8.7e-14 84.3 206 36.4
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.8e-12 79.3 147 36.7
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 1.5e-10 73.6 166 37.3
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.5e-10 73.6 225 31.6
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.7e-09 70.1 1490 23.0
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 1.1e-08 67.4 156 36.5
BcaC06g32868 Brassica carinata HOM05D003157 ORTHO05D004447 1.3e-06 60.5 120 43.3
C07p53750 Brassica napus HOM05D003157 ORTHO05D004447 1.3e-06 60.5 120 43.3


User provided reference genes

Program Settings