Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 1.5e-62 242.7 119 100.0
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 1.1e-41 173.3 120 69.2
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 1.0e-39 166.8 124 65.3
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.0e-39 166.8 118 68.6
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 3.9e-39 164.9 122 63.9
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 8.7e-39 163.7 118 67.8
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 1.9e-38 162.5 117 67.5
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 2.5e-38 162.2 118 66.9
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 7.4e-38 160.6 126 62.7
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 2.1e-37 159.1 119 63.0
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 4.8e-37 157.9 117 65.0
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 4.8e-37 157.9 121 62.0
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 4.8e-37 157.9 118 65.3
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 1.1e-36 156.8 117 64.1
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 1.4e-36 156.4 129 60.5
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 2.4e-36 155.6 121 65.3
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 2.4e-36 155.6 125 60.8
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 3.1e-36 155.2 121 59.5
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 1.2e-35 153.3 113 64.6
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 1.2e-35 153.3 116 62.1
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 1.5e-35 152.9 124 60.5
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 2.6e-35 152.1 119 58.0
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.6e-35 152.1 113 64.6
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 4.5e-35 151.4 120 61.7
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 4.5e-35 151.4 135 56.3
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 5.8e-35 151.0 123 63.4
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 5.8e-35 151.0 120 60.0
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 5.8e-35 151.0 121 58.7
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.0e-34 150.2 113 64.6
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 1.3e-34 149.8 124 61.3
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 1.7e-34 149.4 121 56.2
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 1.7e-34 149.4 122 63.1
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 2.2e-34 149.1 119 60.5
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.2e-34 149.1 113 62.8
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 2.2e-34 149.1 120 63.3
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 2.2e-34 149.1 119 58.8
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 2.9e-34 148.7 123 63.4
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 2.9e-34 148.7 119 62.2
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 3.8e-34 148.3 121 56.2
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 3.8e-34 148.3 124 59.7
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 3.8e-34 148.3 124 61.3
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 3.8e-34 148.3 119 63.9
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 3.8e-34 148.3 130 58.5
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 4.9e-34 147.9 119 63.0
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 4.9e-34 147.9 120 60.0
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 6.5e-34 147.5 121 56.2
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 6.5e-34 147.5 121 56.2
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 6.5e-34 147.5 134 58.2
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 8.4e-34 147.1 121 55.4
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 1.1e-33 146.7 125 57.6
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 1.4e-33 146.4 121 58.7
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 1.4e-33 146.4 119 60.5
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 1.9e-33 146.0 121 56.2
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 2.5e-33 145.6 124 60.5
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 3.2e-33 145.2 121 55.4
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 3.2e-33 145.2 120 62.5
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 4.2e-33 144.8 123 58.5
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 5.5e-33 144.4 121 59.5
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 5.5e-33 144.4 120 63.3
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.2e-32 143.3 119 62.2
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 1.2e-32 143.3 128 59.4
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 1.6e-32 142.9 135 54.8
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.6e-32 142.9 127 60.6
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 2.7e-32 142.1 119 61.3
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 3.5e-32 141.7 122 57.4
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 7.9e-32 140.6 119 58.8
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 7.9e-32 140.6 120 57.5
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 7.9e-32 140.6 128 58.6
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 1.3e-31 139.8 123 57.7
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 1.3e-31 139.8 118 56.8
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 1.8e-31 139.4 118 61.9
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 3.0e-31 138.7 124 58.9
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 6.7e-31 137.5 116 53.4
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 6.7e-31 137.5 118 58.5
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 1.1e-30 136.7 118 60.2
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 1.5e-30 136.3 121 54.5
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.9e-30 136.0 123 56.9
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 3.3e-30 135.2 120 60.0
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 7.4e-30 134.0 117 59.0
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 9.6e-30 133.7 122 55.7
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 1.3e-29 133.3 120 57.5
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 1.6e-29 132.9 124 55.6
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.1e-29 132.5 115 58.3
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 2.8e-29 132.1 118 60.2
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 2.8e-29 132.1 90 62.2
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.8e-29 132.1 117 56.4
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 1.1e-28 130.2 128 57.8
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 1.1e-28 130.2 120 56.7
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.4e-28 129.8 117 57.3
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 1.4e-28 129.8 120 54.2
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 2.4e-28 129.0 123 55.3
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 3.1e-28 128.6 117 56.4
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 4.1e-28 128.3 120 52.5
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 6.9e-28 127.5 117 53.8
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 1.5e-27 126.3 120 52.5
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 7.6e-27 124.0 115 53.9
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.3e-26 123.2 116 55.2
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 1.7e-26 122.9 120 55.8
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 2.5e-25 119.0 120 51.7
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 3.2e-25 118.6 117 52.1
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 4.2e-25 118.2 119 50.4
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 7.2e-25 117.5 120 55.0
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 2.1e-24 115.9 119 51.3
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 3.5e-24 115.2 114 50.0
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 4.6e-24 114.8 115 50.4
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 7.9e-24 114.0 127 45.7
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 1.3e-23 113.2 115 53.0
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 1.9e-22 109.4 116 52.6
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 9.7e-22 107.1 123 49.6
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 1.6e-21 106.3 130 45.4
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 2.2e-21 105.9 119 45.4
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 3.7e-21 105.1 65 66.2
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 4.1e-20 101.7 120 46.7
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 4.1e-20 101.7 136 39.7
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 9.0e-20 100.5 119 47.1
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 9.0e-20 100.5 124 48.4
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 4.5e-19 98.2 92 47.8
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 5.9e-19 97.8 108 47.2
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 7.7e-19 97.4 125 40.0
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 2.5e-17 92.4 120 37.5
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 6.1e-16 87.8 112 40.2
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 3.0e-15 85.5 125 39.2
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 5.1e-15 84.7 85 52.9
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.1e-14 83.6 102 38.2
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 2.0e-14 82.8 114 39.5
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 5.7e-14 81.3 110 39.1
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.3e-13 80.1 55 61.8
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 4.8e-13 78.2 59 59.3
Nitab4.5_0002284g0060 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.1e-12 77.0 123 43.1
Nitab4.5_0011997g0010 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.1e-12 77.0 123 43.1
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.1e-12 77.0 77 42.9
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 2.4e-12 75.9 126 34.1
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 2.4e-12 75.9 115 38.3
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 5.3e-12 74.7 113 38.9
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 9.1e-12 73.9 66 50.0
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 2.0e-11 72.8 69 46.4
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 3.4e-11 72.0 98 43.9
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 2.2e-10 69.3 87 40.2
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 2.9e-10 68.9 62 46.8
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 4.7e-08 61.6 125 33.6
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 5.1e-07 58.2 75 36.0
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 6.7e-07 57.8 49 44.9
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.5e-06 56.6 84 39.3


User provided reference genes

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