Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4340 Avicennia marina HOM05D007328 ORTHO05D009246 2.2e-55 218.8 114 100.0
Migut.D02033 Erythranthe guttata HOM05D007328 ORTHO05D009246 1.7e-39 166.0 103 84.5
SGA_v2.0_scaffold7G04170 Striga asiatica HOM05D007328 ORTHO05D009246 4.1e-38 161.4 103 83.5
SalBow6G3374 Salvia bowleyana HOM05D007328 ORTHO05D009246 8.1e-34 147.1 95 83.2
Nitab4.5_0003542g0010 Nicotiana tabacum HOM05D007328 ORTHO05D009246 4.0e-33 144.8 110 71.8
Sc04g0001180 Simmondsia chinensis HOM05D007328 ORTHO05D009246 4.0e-33 144.8 102 76.5
CSS0000986 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 1.2e-32 143.3 104 74.0
Nitab4.5_0000510g0070 Nicotiana tabacum HOM05D007328 ORTHO05D009246 2.2e-31 139.0 107 72.0
PGSC0003DMG400015227 Solanum tuberosum HOM05D007328 ORTHO05D009246 4.9e-31 137.9 103 74.8
Dinv38499 Davidia involucrata HOM05D007328 ORTHO05D009246 8.4e-31 137.1 102 71.6
Solyc03g111790.4 Solanum lycopersicum HOM05D007328 ORTHO05D009246 1.1e-30 136.7 103 73.8
Sopen03g030890 Solanum pennellii HOM05D007328 ORTHO05D009246 1.1e-30 136.7 103 73.8
CAN.G126.95 Capsicum annuum HOM05D007328 ORTHO05D009246 1.4e-30 136.3 103 74.8
Duzib205G1420 Durio zibethinus HOM05D007328 ORTHO05D009246 3.2e-30 135.2 113 61.1
GSVIVG01007592001 Vitis vinifera HOM05D007328 ORTHO05D009246 7.1e-30 134.0 99 72.7
CANSAT80G1532 Cannabis sativa HOM05D007328 ORTHO05D009246 1.2e-29 133.3 104 65.4
Aqoxy5G03651 Aquilegia oxysepala HOM05D007328 ORTHO05D009246 4.6e-29 131.3 108 63.0
CiPaw.12G033600 Carya illinoinensis HOM05D007328 ORTHO05D009246 7.8e-29 130.6 103 66.0
TWI23G0848 Tripterygium wilfordii HOM05D007328 ORTHO05D009246 1.0e-28 130.2 108 63.9
TAR629G2292 Trochodendron aralioides HOM05D007328 ORTHO05D009246 1.3e-28 129.8 104 69.2
Potri.012G090600 Populus trichocarpa HOM05D007328 ORTHO05D009246 2.3e-28 129.0 105 65.7
PGR044G2544 Punica granatum HOM05D007328 ORTHO05D009246 2.3e-28 129.0 104 66.3
Haze_07631 Corylus avellana HOM05D007328 ORTHO05D009246 3.9e-28 128.3 104 67.3
QL10p005926 Quercus lobata HOM05D007328 ORTHO05D009246 3.9e-28 128.3 102 64.7
Rhsim12G0170200 Rhododendron simsii HOM05D007328 ORTHO05D009246 5.1e-28 127.9 104 66.3
ClCG06G017550 Citrullus lanatus HOM05D007328 ORTHO05D009246 8.6e-28 127.1 105 63.8
unitig_62.g23226 Utricularia gibba HOM05D007328 ORTHO05D009246 1.9e-27 125.9 99 70.7
Lsat_1_v5_gn_5_12821 Lactuca sativa HOM05D007328 ORTHO05D009246 2.5e-27 125.6 102 65.7
Gohir.D12G189600 Gossypium hirsutum HOM05D007328 ORTHO05D009246 3.3e-27 125.2 105 64.8
Prupe.5G161600 Prunus persica HOM05D007328 ORTHO05D009246 3.3e-27 125.2 104 63.5
Sed0026647 Sechium edule HOM05D007328 ORTHO05D009246 3.3e-27 125.2 106 67.0
DCAR_007459 Daucus carota HOM05D007328 ORTHO05D009246 4.3e-27 124.8 103 65.0
Gohir.A12G186600 Gossypium hirsutum HOM05D007328 ORTHO05D009246 5.6e-27 124.4 105 64.8
Hund05612 Selenicereus undatus HOM05D007328 ORTHO05D009246 5.6e-27 124.4 104 62.5
ECA246G4123 Erigeron canadensis HOM05D007328 ORTHO05D009246 7.3e-27 124.0 102 65.7
FAN04G3262 Fragaria x ananassa HOM05D007328 ORTHO05D009246 7.3e-27 124.0 105 64.8
Lsat_1_v5_gn_3_90700 Lactuca sativa HOM05D007328 ORTHO05D009246 7.3e-27 124.0 115 60.9
Gorai.008G203400 Gossypium raimondii HOM05D007328 ORTHO05D009246 9.6e-27 123.6 105 63.8
PSO067G0004 Papaver somniferum HOM05D007328 ORTHO05D009246 9.6e-27 123.6 103 61.2
RcHm_v2.0_Chr7g0191941 Rosa chinensis HOM05D007328 ORTHO05D009246 9.6e-27 123.6 103 66.0
Ciclev10022963m.g Citrus clementina HOM05D007328 ORTHO05D009246 1.2e-26 123.2 108 64.8
FAN18G0524 Fragaria x ananassa HOM05D007328 ORTHO05D009246 1.2e-26 123.2 105 64.8
Ah.08g218420 Amaranthus hybridus HOM05D007328 ORTHO05D009246 1.6e-26 122.9 103 64.1
CsaV3_1G000900 Cucumis sativus L. HOM05D007328 ORTHO05D009246 1.6e-26 122.9 107 60.7
Duzib068G0271 Durio zibethinus HOM05D007328 ORTHO05D009246 2.1e-26 122.5 99 63.6
FAN13G1360 Fragaria x ananassa HOM05D007328 ORTHO05D009246 3.6e-26 121.7 105 63.8
Lj4g0027684 Lotus japonicus HOM05D007328 ORTHO05D009246 3.6e-26 121.7 104 62.5
FvH4_5g06690 Fragaria vesca HOM05D007328 ORTHO05D009246 4.7e-26 121.3 105 63.8
AT1G78790 Arabidopsis thaliana HOM05D007328 ORTHO05D009246 1.4e-25 119.8 101 64.4
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 1.4e-25 119.8 101 64.4
Cc04_g10870 Coffea canephora HOM05D007328 ORTHO05D009246 1.4e-25 119.8 102 64.7
PSO063G4259 Papaver somniferum HOM05D007328 ORTHO05D009246 1.4e-25 119.8 96 64.6
Carub.0002s1493 Capsella rubella HOM05D007328 ORTHO05D009246 1.8e-25 119.4 101 64.4
AL2G39190 Arabidopsis lyrata HOM05D007328 ORTHO05D009246 2.4e-25 119.0 101 64.4
THA.LOC104809276 Tarenaya hassleriana HOM05D007328 ORTHO05D009246 3.1e-25 118.6 104 61.5
BcaC08g47455 Brassica carinata HOM05D007328 ORTHO05D009246 4.0e-25 118.2 101 63.4
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 4.0e-25 118.2 101 63.4
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 4.0e-25 118.2 101 63.4
BraA07t31907Z Brassica rapa HOM05D007328 ORTHO05D009246 4.0e-25 118.2 101 63.4
Hma1.2p1_2431F.1_g322030 Hydrangea macrophylla HOM05D007328 ORTHO05D009246 6.9e-25 117.5 100 65.0
CARHR072340 Cardamine hirsuta HOM05D007328 ORTHO05D009246 1.2e-24 116.7 99 64.6
Sp5g33820 Schrenkiella parvula HOM05D007328 ORTHO05D009246 1.2e-24 116.7 101 62.4
COL.COLO4_19806 Corchorus olitorius HOM05D007328 ORTHO05D009246 4.4e-24 114.8 102 62.7
MELO3C026242.2 Cucumis melo HOM05D007328 ORTHO05D009246 7.6e-24 114.0 107 60.7
Thecc.03G118600 Theobroma cacao HOM05D007328 ORTHO05D009246 7.6e-24 114.0 100 61.0
Ca_19431_v3 Cicer arietinum L. HOM05D007328 ORTHO05D009246 9.9e-24 113.6 104 58.7
Gorai.006G269700 Gossypium raimondii HOM05D007328 ORTHO05D009246 1.3e-23 113.2 105 58.1
SHI17354 Sapria himalayana HOM05D007328 ORTHO05D009246 1.7e-23 112.8 102 59.8
TPR.G37571 Trifolium pratense HOM05D007328 ORTHO05D009246 1.7e-23 112.8 106 57.5
arahy.Tifrunner.gnm1.ann1.RLPB8M Arachis hypogaea HOM05D007328 ORTHO05D009246 2.2e-23 112.5 104 60.6
Gohir.A09G244400 Gossypium hirsutum HOM05D007328 ORTHO05D009246 2.9e-23 112.1 105 57.1
HPP92_017655 Vanilla planifolia HOM05D007328 ORTHO05D009246 2.9e-23 112.1 102 62.7
HanXRQChr08g0235201 Helianthus annuus HOM05D007328 ORTHO05D009246 6.4e-23 110.9 100 62.0
Gohir.D09G245301 Gossypium hirsutum HOM05D007328 ORTHO05D009246 1.4e-22 109.8 105 56.2
Medtr4g104430 Medicago truncatula HOM05D007328 ORTHO05D009246 1.4e-22 109.8 106 58.5
Os04g0481500 Oryza sativa ssp. japonica HOM05D007328 ORTHO05D009246 1.9e-22 109.4 103 57.3
FAN08G2248 Fragaria x ananassa HOM05D007328 ORTHO05D009246 2.4e-22 109.0 122 54.9
Glyma.05G043400 Glycine max HOM05D007328 ORTHO05D009246 4.2e-22 108.2 106 58.5
CDE02G4603 Ceratophyllum demersum HOM05D007328 ORTHO05D009246 5.4e-22 107.8 114 56.1
arahy.Tifrunner.gnm1.ann1.VT7US1 Arachis hypogaea HOM05D007328 ORTHO05D009246 1.2e-21 106.7 95 62.1
AagrBONN_evm.TU.Sc2ySwM_369.482 Anthoceros agrestis HOM05D007328 ORTHO05D009246 3.5e-21 105.1 108 51.9
Phvul.003G206900 Phaseolus vulgaris HOM05D007328 ORTHO05D009246 3.5e-21 105.1 104 54.8
Lalb_Chr07g0183141 Lupinus albus HOM05D007328 ORTHO05D009246 4.6e-21 104.8 103 56.3
Glyma.17G125900 Glycine max HOM05D007328 ORTHO05D009246 1.3e-20 103.2 104 53.8
Pp3c15_7370 Physcomitrium patens HOM05D007328 ORTHO05D009246 3.0e-20 102.1 103 55.3
Sabra12G0065400 Salix brachista HOM05D007328 ORTHO05D009246 1.9e-19 99.4 81 67.9
Psat4g062040 Pisum sativum HOM05D007328 ORTHO05D009246 3.3e-19 98.6 87 62.1
vmacro16689 Vaccinium macrocarpon HOM05D007328 ORTHO05D009246 7.3e-19 97.4 67 74.6
CSS0030634 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 3.6e-18 95.1 105 58.1
BolC6t40286H Brassica oleracea HOM05D007328 ORTHO05D009246 6.2e-18 94.4 70 71.4
Manes.06G112300 Manihot esculenta HOM05D007328 ORTHO05D009246 6.2e-18 94.4 67 74.6
Aa31LG4G2240 Aethionema arabicum HOM05D007328 ORTHO05D009246 1.1e-17 93.6 60 81.7
C03p92780 Brassica napus HOM05D007328 ORTHO05D009246 1.8e-17 92.8 70 70.0
Ca_30674_v3 Cicer arietinum L. HOM05D007328 ORTHO05D009246 9.0e-17 90.5 67 68.7
AUR62001234 Chenopodium quinoa HOM05D007328 ORTHO05D009246 1.2e-16 90.1 60 78.3
QL10p005934 Quercus lobata HOM05D007328 ORTHO05D009246 1.5e-16 89.7 70 64.3
Atru.chr9.1808 Acer truncatum HOM05D007328 ORTHO05D009246 2.0e-16 89.4 83 67.5
SEGI_23865 Sequoiadendron giganteum HOM05D007328 ORTHO05D009246 2.0e-16 89.4 65 69.2
Mapoly0166s0013 Marchantia polymorpha HOM05D007328 ORTHO05D009246 7.6e-16 87.4 66 68.2
MBI10_g15972_MAGBIO Magnolia biondii HOM05D007328 ORTHO05D009246 9.9e-16 87.0 53 84.9
Thhalv10019789m.g Eutrema salsugineum HOM05D007328 ORTHO05D009246 2.9e-15 85.5 52 84.6
ATR0199G045 Amborella trichopoda HOM05D007328 ORTHO05D009246 4.9e-15 84.7 50 86.0
Actinidia08840 Actinidia chinensis HOM05D007328 ORTHO05D009246 1.4e-14 83.2 50 84.0
ECA233G5563 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.2e-14 82.0 56 78.6
Nn3g16640 Nelumbo nucifera HOM05D007328 ORTHO05D009246 6.0e-13 77.8 70 61.4
SMO203G0244 Selaginella moellendorffii HOM05D007328 ORTHO05D009246 6.0e-13 77.8 53 73.6
CSS0039715 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 9.0e-09 63.9 39 79.5
MCO11G116 Micromonas commoda HOM05D007328 ORTHO05D009246 6.4e-07 57.8 101 35.6


User provided reference genes

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