Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 0.0e+00 1322.0 655 100.0
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 0.0e+00 1097.4 658 81.8
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 9.0e-287 989.9 656 74.8
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.0e-245 853.6 659 65.4
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.7e-245 852.8 651 64.8
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 3.2e-244 848.6 659 65.4
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 4.2e-244 848.2 652 64.9
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 8.8e-242 840.5 659 66.2
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 8.2e-240 833.9 656 64.5
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 1.1e-239 833.6 652 63.8
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.6e-238 829.7 660 64.2
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 2.0e-238 829.3 652 63.5
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 5.9e-238 827.8 653 63.2
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 1.7e-237 826.2 652 62.9
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 8.5e-237 823.9 652 63.3
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 1.9e-236 822.8 653 63.7
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 2.5e-236 822.4 650 63.1
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 1.2e-235 820.1 654 63.3
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 2.0e-233 812.8 661 62.5
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 2.6e-233 812.4 652 64.0
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 3.4e-233 812.0 652 63.8
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 2.2e-232 809.3 662 63.0
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 2.8e-232 808.9 648 63.1
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 2.0e-230 802.7 656 62.0
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 4.5e-230 801.6 659 62.2
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 7.7e-230 800.8 651 61.9
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 1.0e-229 800.4 617 66.1
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 1.5e-228 796.6 679 60.7
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.5e-228 796.6 655 61.2
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 3.6e-227 792.0 655 62.4
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 6.1e-227 791.2 654 61.2
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 1.4e-226 790.0 651 60.8
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 3.0e-226 788.9 660 60.6
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 6.8e-226 787.7 651 61.4
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 1.3e-224 783.5 660 61.2
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 1.3e-224 783.5 660 61.2
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 1.3e-224 783.5 649 62.2
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 2.2e-224 782.7 661 60.8
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 5.4e-223 778.1 660 60.3
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 7.0e-223 777.7 655 60.8
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 7.0e-223 777.7 660 60.6
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 1.6e-222 776.5 660 62.9
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 2.0e-222 776.2 657 59.8
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.7e-221 773.1 658 60.3
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 1.7e-221 773.1 657 60.7
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 3.8e-221 771.9 652 59.4
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 5.0e-221 771.5 660 59.7
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 1.1e-220 770.4 653 59.7
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 3.3e-220 768.8 654 60.4
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 3.3e-220 768.8 653 59.7
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 2.1e-219 766.1 632 64.2
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 3.6e-219 765.4 653 59.3
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 3.6e-219 765.4 651 59.6
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 6.1e-219 764.6 652 59.5
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 1.0e-218 763.8 657 61.2
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 1.4e-218 763.5 657 59.7
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 4.0e-218 761.9 655 59.4
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 4.0e-218 761.9 658 59.9
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 3.4e-217 758.8 653 58.7
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 5.7e-217 758.1 652 59.2
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 2.2e-216 756.1 653 59.3
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 2.2e-216 756.1 653 59.1
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 5.4e-215 751.5 657 58.9
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 5.4e-215 751.5 654 58.4
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 2.0e-214 749.6 653 57.6
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 2.9e-213 745.7 655 57.7
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 2.9e-213 745.7 662 57.3
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 5.0e-213 745.0 654 57.5
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 8.6e-213 744.2 631 61.0
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 7.3e-212 741.1 658 57.9
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 2.1e-211 739.6 655 56.9
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 8.9e-210 734.2 665 56.4
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.2e-209 733.8 655 58.9
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 2.0e-209 733.0 652 57.5
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 3.4e-209 732.3 618 60.2
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 5.8e-209 731.5 660 57.9
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 1.1e-207 727.2 665 55.6
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.9e-207 726.5 660 55.0
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 4.1e-207 725.3 650 57.7
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 2.3e-205 719.5 541 66.2
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 6.6e-205 718.0 621 59.9
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 7.1e-199 698.0 553 66.5
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 7.1e-199 698.0 686 55.8
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 1.7e-197 693.3 652 53.7
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 1.4e-194 683.7 651 54.4
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 7.1e-191 671.4 651 53.9
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 4.6e-190 668.7 649 55.0
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 2.7e-182 642.9 572 58.2
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 4.3e-180 635.6 594 53.7
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 1.2e-177 627.5 695 50.2
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.0e-177 626.7 580 58.4
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.9e-175 620.2 624 54.5
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 4.5e-169 599.0 492 62.4
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 4.2e-151 539.3 510 55.1
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 5.3e-146 522.3 481 57.0
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 8.8e-141 505.0 652 44.3
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 2.0e-140 503.8 599 47.7
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 2.2e-131 473.8 633 43.4
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 7.7e-129 465.3 647 42.3
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 5.5e-127 459.1 254 85.8
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 1.1e-119 434.9 476 50.4
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 4.7e-110 402.9 377 54.4
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 8.6e-96 355.5 178 90.4
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 1.1e-90 338.6 344 51.7
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 9.2e-90 335.5 293 62.8
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 1.5e-87 328.2 424 43.2
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 4.3e-87 326.6 261 63.2
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.0e-80 305.4 197 72.6
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 6.6e-72 276.2 364 41.2
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 3.3e-55 220.7 170 64.7
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 2.1e-54 218.0 104 93.3
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 2.2e-51 208.0 106 85.8
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 5.6e-47 193.4 268 40.7
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 2.3e-40 171.4 228 39.9
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 4.5e-36 157.1 200 41.0
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.2e-35 154.8 178 47.2
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 2.7e-33 147.9 137 56.9
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 1.8e-32 145.2 500 28.8
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 3.8e-27 127.5 68 85.3
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 8.5e-27 126.3 59 88.1
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.6e-25 122.1 83 69.9
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.6e-25 122.1 153 48.4
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 3.7e-22 110.9 102 52.9
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 2.0e-20 105.1 83 59.0
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 1.2e-17 95.9 72 63.9
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 1.8e-16 92.0 76 61.8
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 3.0e-16 91.3 74 63.5
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 3.9e-16 90.9 74 62.2
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 2.0e-15 88.6 74 60.8
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 2.0e-15 88.6 74 60.8
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 1.3e-14 85.9 74 60.8
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 2.5e-10 71.6 75 53.3
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 2.5e-10 71.6 75 52.0
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 9.7e-07 59.7 102 36.3


User provided reference genes

Program Settings