Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.433 Avicennia marina HOM05D005682 ORTHO05D007050 0.0e+00 2174.4 1089 100.0
Migut.L00859 Erythranthe guttata HOM05D005682 ORTHO05D007050 0.0e+00 1395.9 1085 66.6
SalBow2G1379 Salvia bowleyana HOM05D005682 ORTHO05D007050 0.0e+00 1317.8 1188 58.8
Oeu033538.1 Olea europaea HOM05D005682 ORTHO05D007050 0.0e+00 1235.3 1100 59.6
GSVIVG01010197001 Vitis vinifera HOM05D005682 ORTHO05D007050 4.8e-277 958.4 1089 49.2
Actinidia04079 Actinidia chinensis HOM05D005682 ORTHO05D007050 2.0e-275 953.0 1127 48.3
Lj6A721G56 Lonicera japonica HOM05D005682 ORTHO05D007050 5.7e-262 908.3 1114 46.4
CiPaw.05G167300 Carya illinoinensis HOM05D005682 ORTHO05D007050 5.3e-260 901.7 1110 46.2
Rhsim09G0074000 Rhododendron simsii HOM05D005682 ORTHO05D007050 9.1e-260 901.0 1105 47.0
Prupe.1G345800 Prunus persica HOM05D005682 ORTHO05D007050 6.8e-255 884.8 1116 45.3
Duzib052G0545 Durio zibethinus HOM05D005682 ORTHO05D007050 1.7e-253 880.2 1107 44.5
Potri.007G070400 Populus trichocarpa HOM05D005682 ORTHO05D007050 1.1e-252 877.5 1104 45.2
Duzib132G1218 Durio zibethinus HOM05D005682 ORTHO05D007050 5.0e-250 868.6 1103 44.3
Gorai.013G070900 Gossypium raimondii HOM05D005682 ORTHO05D007050 6.6e-250 868.2 1107 43.8
Gohir.A13G059600 Gossypium hirsutum HOM05D005682 ORTHO05D007050 1.9e-249 866.7 1108 43.6
Sabra07G0059000 Salix brachista HOM05D005682 ORTHO05D007050 1.2e-248 864.0 1096 45.0
TAR622G0093 Trochodendron aralioides HOM05D005682 ORTHO05D007050 1.6e-248 863.6 1063 46.2
Nn4g24940 Nelumbo nucifera HOM05D005682 ORTHO05D007050 8.0e-248 861.3 1097 44.7
Gohir.D13G062400 Gossypium hirsutum HOM05D005682 ORTHO05D007050 4.0e-247 859.0 1107 43.7
CANSAT64G0530 Cannabis sativa HOM05D005682 ORTHO05D007050 6.8e-247 858.2 1121 43.4
MD13G1007100 Malus domestica HOM05D005682 ORTHO05D007050 6.8e-247 858.2 1110 44.1
DCAR_002567 Daucus carota HOM05D005682 ORTHO05D007050 1.2e-246 857.4 1071 45.1
Haze_11722 Corylus avellana HOM05D005682 ORTHO05D007050 2.0e-246 856.7 1080 46.0
RcHm_v2.0_Chr4g0446491 Rosa chinensis HOM05D005682 ORTHO05D007050 4.9e-245 852.0 1105 44.6
PSO063G1542 Papaver somniferum HOM05D005682 ORTHO05D007050 9.2e-244 847.8 1117 44.1
TWI74G0147 Tripterygium wilfordii HOM05D005682 ORTHO05D007050 9.5e-241 837.8 1104 44.7
Glyma.11G102200 Glycine max HOM05D005682 ORTHO05D007050 2.3e-239 833.2 1117 43.9
FvH4_4g36771 Fragaria vesca HOM05D005682 ORTHO05D007050 8.9e-239 831.2 1106 43.2
Phvul.011G031200 Phaseolus vulgaris HOM05D005682 ORTHO05D007050 2.4e-236 823.2 1088 44.3
ECA246G2025 Erigeron canadensis HOM05D005682 ORTHO05D007050 1.7e-234 817.0 1098 41.8
VMungo1127G0377 Vigna mungo HOM05D005682 ORTHO05D007050 5.0e-234 815.5 1091 44.5
FAN17G1521 Fragaria x ananassa HOM05D005682 ORTHO05D007050 8.0e-232 808.1 1102 42.6
PGR044G2237 Punica granatum HOM05D005682 ORTHO05D007050 1.7e-229 800.4 1096 43.2
HanXRQChr17g0540811 Helianthus annuus HOM05D005682 ORTHO05D007050 1.6e-227 793.9 1106 40.8
FAN07G1253 Fragaria x ananassa HOM05D005682 ORTHO05D007050 1.3e-226 790.8 1101 42.5
ClCG09G004600 Citrullus lanatus HOM05D005682 ORTHO05D007050 3.0e-226 789.6 1080 42.9
Sed0007950 Sechium edule HOM05D005682 ORTHO05D007050 9.5e-225 784.6 1073 43.3
unitig_699.g19973 Utricularia gibba HOM05D005682 ORTHO05D007050 9.5e-225 784.6 1057 44.3
MELO3C023602.2 Cucumis melo HOM05D005682 ORTHO05D007050 4.7e-224 782.3 1077 42.9
Eucgr.J00855 Eucalyptus grandis HOM05D005682 ORTHO05D007050 6.2e-224 781.9 1049 43.9
Lj3g0015709 Lotus japonicus HOM05D005682 ORTHO05D007050 1.8e-223 780.4 1087 42.3
vmacro10900 Vaccinium macrocarpon HOM05D005682 ORTHO05D007050 1.8e-223 780.4 1180 40.8
Sopen02g009170 Solanum pennellii HOM05D005682 ORTHO05D007050 2.3e-223 780.0 949 46.2
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 6.8e-223 778.5 1045 44.3
PSO782G3049 Papaver somniferum HOM05D005682 ORTHO05D007050 2.6e-222 776.5 1052 43.4
Sc06g0007890 Simmondsia chinensis HOM05D005682 ORTHO05D007050 1.1e-220 771.2 1131 40.1
Lalb_Chr01g0001491 Lupinus albus HOM05D005682 ORTHO05D007050 2.1e-219 766.9 1091 41.9
Aqoxy2G03805 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 7.8e-219 765.0 1075 41.6
Medtr4g074610 Medicago truncatula HOM05D005682 ORTHO05D007050 3.1e-215 753.1 1076 41.0
THA.LOC104826522 Tarenaya hassleriana HOM05D005682 ORTHO05D007050 2.0e-214 750.4 1073 41.5
QL03p043857 Quercus lobata HOM05D005682 ORTHO05D007050 2.6e-214 750.0 1431 35.6
Peaxi162Scf00363g00730 Petunia axillaris HOM05D005682 ORTHO05D007050 3.4e-214 749.6 918 44.2
TPR.G32358 Trifolium pratense HOM05D005682 ORTHO05D007050 1.7e-213 747.3 1084 41.4
Lsat_1_v5_gn_3_33580 Lactuca sativa HOM05D005682 ORTHO05D007050 1.2e-211 741.1 1108 39.6
AL3G33230 Arabidopsis lyrata HOM05D005682 ORTHO05D007050 2.7e-211 740.0 1087 40.8
ATR0618G435 Amborella trichopoda HOM05D005682 ORTHO05D000625 1.5e-206 724.2 1145 39.5
Carub.0003s1966 Capsella rubella HOM05D005682 ORTHO05D007050 3.8e-205 719.5 1082 39.6
BraA05t21829Z Brassica rapa HOM05D005682 ORTHO05D007050 1.9e-204 717.2 1085 40.4
Thecc.02G161600 Theobroma cacao HOM05D005682 ORTHO05D007050 5.4e-204 715.7 891 45.0
Thhalv10019965m.g Eutrema salsugineum HOM05D005682 ORTHO05D007050 7.8e-203 711.8 1066 38.7
Ciclev10030666m.g Citrus clementina HOM05D005682 ORTHO05D007050 1.3e-202 711.1 894 43.7
Hund13152 Selenicereus undatus HOM05D005682 ORTHO05D007050 3.0e-202 709.9 1031 40.9
BcaB06g26047 Brassica carinata HOM05D005682 ORTHO05D007050 3.9e-202 709.5 1085 39.5
AT3G19780 Arabidopsis thaliana HOM05D005682 ORTHO05D007050 1.1e-201 708.0 1085 39.5
CsaV3_7G030540 Cucumis sativus L. HOM05D005682 ORTHO05D007050 1.1e-201 708.0 1014 42.5
BolC5t33225H Brassica oleracea HOM05D005682 ORTHO05D007050 7.3e-201 705.3 1084 39.8
Ah.14g085910 Amaranthus hybridus HOM05D005682 ORTHO05D007050 9.6e-201 704.9 1097 37.6
Sp3g17800 Schrenkiella parvula HOM05D005682 ORTHO05D007050 1.4e-199 701.0 1110 38.4
Aa31LG8G6560 Aethionema arabicum HOM05D005682 ORTHO05D007050 4.5e-198 696.0 1072 39.6
Ca_03025_v3 Cicer arietinum L. HOM05D005682 ORTHO05D007050 4.9e-197 692.6 1050 40.2
EL10Ac9g20684 Beta vulgaris HOM05D005682 ORTHO05D007050 1.6e-195 687.6 1031 40.2
AUR62018178 Chenopodium quinoa HOM05D005682 ORTHO05D007050 5.3e-191 672.5 1197 36.2
BcaC05g28416 Brassica carinata HOM05D005682 ORTHO05D007050 1.5e-190 671.0 1079 38.6
Nitab4.5_0000139g0140 Nicotiana tabacum HOM05D005682 ORTHO05D007050 7.1e-188 662.1 805 46.1
Manes.11G108701 Manihot esculenta HOM05D005682 ORTHO05D007050 1.4e-183 647.9 899 43.5
Cfa008712 Carpinus fangiana HOM05D005682 ORTHO05D007050 5.5e-180 636.0 846 44.6
arahy.Tifrunner.gnm1.ann1.3I7IYH Arachis hypogaea HOM05D005682 ORTHO05D007050 6.7e-178 629.0 903 42.1
CAN.G157.16 Capsicum annuum HOM05D005682 ORTHO05D007050 5.7e-177 625.9 847 42.5
AUR62038663 Chenopodium quinoa HOM05D005682 ORTHO05D007050 8.2e-176 622.1 1059 37.0
Zm00001eb221340 Zea mays HOM05D005682 ORTHO05D007050 1.1e-172 611.7 1210 34.4
Cc11_g00090 Coffea canephora HOM05D005682 ORTHO05D007050 3.4e-166 590.1 772 44.2
arahy.Tifrunner.gnm1.ann1.H4B4B0 Arachis hypogaea HOM05D005682 ORTHO05D007050 3.5e-158 563.5 764 43.6
C05p45010 Brassica napus HOM05D005682 ORTHO05D007050 6.1e-155 552.7 891 38.2
A05p29780 Brassica napus HOM05D005682 ORTHO05D007050 6.7e-154 549.3 895 38.3
Dinv11710 Davidia involucrata HOM05D005682 ORTHO05D007050 3.0e-146 523.9 528 53.0
Psat7g173480 Pisum sativum HOM05D005682 ORTHO05D007050 1.8e-135 488.0 802 38.2
Solyc02g055460.3 Solanum lycopersicum HOM05D005682 ORTHO05D007050 5.9e-134 483.0 712 41.7
Hma1.2p1_0499F.1_g166820 Hydrangea macrophylla HOM05D005682 ORTHO05D007050 2.3e-130 471.1 466 52.1
SEGI_38899 Sequoiadendron giganteum HOM05D005682 ORTHO05D007050 2.4e-127 461.1 1264 29.4
Dinv11711 Davidia involucrata HOM05D005682 ORTHO05D007050 1.2e-126 458.8 488 51.2
CARHR095300 Cardamine hirsuta HOM05D005682 ORTHO05D007050 2.3e-122 444.5 756 37.2
Atru.chr11.1182 Acer truncatum HOM05D005682 ORTHO05D007050 7.5e-121 439.5 522 47.7
COL.COLO4_08120 Corchorus olitorius HOM05D005682 ORTHO05D007050 2.9e-112 411.0 782 35.8
CDE04G1407 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 8.4e-104 382.9 751 33.6
Os10g0485100 Oryza sativa ssp. japonica HOM05D005682 ORTHO05D007050 1.2e-97 362.5 590 36.9
BraA05t21816Z Brassica rapa HOM05D005682 ORTHO05D007050 6.0e-94 350.1 621 35.9
Nitab4.5_0028170g0010 Nicotiana tabacum HOM05D005682 ORTHO05D007050 3.3e-92 344.4 510 42.0
HPP92_008567 Vanilla planifolia HOM05D005682 ORTHO05D007050 2.8e-91 341.3 562 36.5
HPP92_008562 Vanilla planifolia HOM05D005682 ORTHO05D007050 4.0e-90 337.4 793 30.8
BcaC05g28417 Brassica carinata HOM05D005682 ORTHO05D007050 6.6e-85 320.1 464 41.8
AagrBONN_evm.TU.Sc2ySwM_340.174 Anthoceros agrestis HOM05D005682 ORTHO05D007050 7.6e-81 306.6 1164 24.8
CSS0031646 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 8.1e-75 286.6 348 47.7
CSS0028316 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 1.1e-71 276.2 278 50.7
SHI13893 Sapria himalayana HOM05D005682 ORTHO05D007050 5.7e-68 263.8 501 34.5
BcaC05g28407 Brassica carinata HOM05D005682 ORTHO05D007050 2.8e-67 261.5 360 41.7
CAN.G157.17 Capsicum annuum HOM05D005682 ORTHO05D007050 9.0e-66 256.5 253 50.2
Cc11_g00100 Coffea canephora HOM05D005682 ORTHO05D007050 1.9e-63 248.8 196 58.2
Nitab4.5_0002392g0030 Nicotiana tabacum HOM05D005682 ORTHO05D007050 2.1e-62 245.4 199 55.8
Sopen02g009200 Solanum pennellii HOM05D005682 ORTHO05D007050 1.8e-61 242.3 206 60.2
Solyc02g055470.2 Solanum lycopersicum HOM05D005682 ORTHO05D007050 3.0e-61 241.5 203 61.6
CDE04G1313 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 1.5e-57 229.2 301 44.9
CARHR095290 Cardamine hirsuta HOM05D005682 ORTHO05D007050 1.0e-56 226.5 320 41.6
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 2.2e-56 225.3 980 25.4
Cc11_g04390 Coffea canephora HOM05D005682 ORTHO05D007050 1.4e-55 222.6 262 46.6
Nitab4.5_0002392g0020 Nicotiana tabacum HOM05D005682 ORTHO05D007050 9.1e-50 203.4 202 54.0
COL.COLO4_08119 Corchorus olitorius HOM05D005682 ORTHO05D007050 1.7e-48 199.1 183 54.1
Pp3c7_6630 Physcomitrium patens HOM05D005682 ORTHO05D007050 3.6e-46 191.4 1032 23.3
SHI13892 Sapria himalayana HOM05D005682 ORTHO05D007050 3.3e-44 184.9 162 56.8
SHI13894 Sapria himalayana HOM05D005682 ORTHO05D007050 4.4e-44 184.5 308 35.7
A05p29790 Brassica napus HOM05D005682 ORTHO05D007050 9.1e-42 176.8 195 49.2
Nitab4.5_0000139g0150 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.1e-39 169.9 135 63.7
CSS0001307 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 1.2e-38 166.4 213 41.3
Peaxi162Scf00363g00073 Petunia axillaris HOM05D005682 ORTHO05D007050 1.4e-29 136.3 121 59.5
CSS0026201 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 2.0e-28 132.5 125 55.2
C05p44920 Brassica napus HOM05D005682 ORTHO05D007050 2.4e-18 99.0 192 33.3
BcaC05g28408 Brassica carinata HOM05D005682 ORTHO05D007050 1.6e-17 96.3 115 43.5
Aqoxy2G03797 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 5.6e-15 87.8 106 46.2
CBR_g66815 Chara braunii HOM05D005682 ORTHO05D007050 1.7e-11 76.3 138 27.5
Psat4g043640 Pisum sativum HOM05D005682 ORTHO05D007050 4.9e-11 74.7 103 36.9
SEGI_17937 Sequoiadendron giganteum HOM05D002497 ORTHO05D002697 8.3e-11 73.9 151 35.1
FvH4_4g15932 Fragaria vesca HOM05D005682 ORTHO05D007050 1.4e-10 73.2 147 37.4
FvH4_6g37553 Fragaria vesca HOM05D005682 ORTHO05D007050 4.6e-09 68.2 104 40.4
ClCG11G004610 Citrullus lanatus HOM05D002497 ORTHO05D002697 1.7e-08 66.2 153 32.0
Mapoly0072s0055 Marchantia polymorpha HOM05D002497 ORTHO05D002697 1.7e-08 66.2 150 34.0
ATR0598G145 Amborella trichopoda HOM05D002497 ORTHO05D002697 2.3e-08 65.9 160 30.6
ATR1089G083 Amborella trichopoda HOM05D002497 ORTHO05D002697 5.0e-08 64.7 160 27.5
SMO141G0017 Selaginella moellendorffii HOM05D002497 ORTHO05D002697 6.6e-08 64.3 153 28.8
Os01g0886000 Oryza sativa ssp. japonica HOM05D002497 ORTHO05D002697 1.9e-07 62.8 160 28.8
Eucgr.I01992 Eucalyptus grandis HOM05D002497 ORTHO05D002697 3.3e-07 62.0 149 30.9
Hma1.2p1_0423F.1_g150190 Hydrangea macrophylla HOM05D002497 ORTHO05D002697 3.3e-07 62.0 153 31.4
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 4.3e-07 61.6 164 29.3
HPP92_008566 Vanilla planifolia HOM05D005682 ORTHO05D007050 4.3e-07 61.6 177 27.7
SHI16731 Sapria himalayana HOM05D002497 ORTHO05D002697 1.6e-06 59.7 154 27.9
Zm00001eb366020 Zea mays HOM05D002497 ORTHO05D002697 1.6e-06 59.7 155 31.6
Aa31LG9G11990 Aethionema arabicum HOM05D002497 ORTHO05D002697 3.6e-06 58.5 163 27.0


User provided reference genes

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