Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 7.6e-172 607.1 306 100.0
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.9e-115 418.7 294 74.1
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 3.1e-112 409.1 301 71.4
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 3.7e-102 375.6 289 67.5
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 8.6e-99 364.4 286 68.2
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 2.1e-97 359.8 287 64.8
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 6.6e-91 338.2 286 61.9
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 8.7e-91 337.8 280 61.1
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 3.3e-90 335.9 281 63.7
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 1.6e-89 333.6 291 60.1
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 7.6e-87 324.7 294 58.8
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 2.9e-86 322.8 301 59.1
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 3.8e-86 322.4 266 62.4
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 3.8e-86 322.4 266 62.4
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 1.2e-84 317.4 294 57.1
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 3.5e-84 315.8 294 57.1
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.1e-81 306.6 322 53.1
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 3.6e-81 305.8 296 56.1
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 8.1e-81 304.7 314 53.8
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 1.4e-80 303.9 285 57.5
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 5.3e-80 302.0 298 56.4
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 1.4e-77 293.9 291 55.7
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 2.4e-77 293.1 288 54.2
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 2.4e-77 293.1 293 54.3
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 3.2e-77 292.7 282 55.7
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 4.2e-77 292.4 283 55.5
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 3.5e-76 289.3 284 55.3
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 1.0e-75 287.7 276 56.9
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 1.8e-75 287.0 283 53.0
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 8.7e-75 284.6 292 52.1
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 1.1e-74 284.3 291 55.0
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 2.5e-74 283.1 286 54.5
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 3.3e-74 282.7 292 52.1
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 4.3e-74 282.3 279 54.8
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 2.8e-73 279.6 277 53.4
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 3.7e-73 279.3 292 52.7
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.1e-72 277.7 196 71.9
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 1.8e-72 276.9 290 52.4
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 9.0e-72 274.6 285 53.0
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 2.0e-71 273.5 287 53.0
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 4.5e-71 272.3 285 51.6
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 5.8e-71 271.9 283 51.6
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 1.3e-70 270.8 287 51.6
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.5e-69 266.5 206 68.0
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 5.5e-69 265.4 230 57.8
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 7.1e-69 265.0 282 51.8
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 9.3e-69 264.6 268 54.5
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 2.7e-68 263.1 276 50.7
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 4.6e-68 262.3 289 51.2
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 7.9e-68 261.5 280 51.1
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 1.3e-67 260.8 282 50.7
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 2.3e-67 260.0 276 50.7
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 6.7e-67 258.5 249 57.0
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 1.5e-66 257.3 283 50.5
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 4.3e-66 255.8 285 44.9
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 4.3e-66 255.8 285 49.1
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 2.1e-65 253.4 279 50.5
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 2.8e-65 253.1 293 47.8
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 4.8e-65 252.3 242 57.0
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 4.8e-65 252.3 274 52.6
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 4.8e-65 252.3 294 47.6
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 6.2e-65 251.9 282 44.7
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.1e-64 251.1 394 40.4
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 1.4e-64 250.8 263 55.5
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 3.1e-64 249.6 304 42.8
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 1.2e-63 247.7 280 45.0
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.0e-63 246.9 262 53.1
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.9e-61 240.4 246 53.3
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 2.5e-61 240.0 306 46.4
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 4.2e-61 239.2 200 60.5
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.2e-61 239.2 245 53.5
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 9.3e-61 238.0 263 49.8
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 1.2e-60 237.7 256 54.3
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 2.7e-60 236.5 272 50.0
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 7.9e-60 235.0 303 46.5
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 6.7e-59 231.9 304 46.1
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 8.7e-59 231.5 305 42.6
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.5e-58 229.9 277 44.8
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 3.3e-58 229.6 277 44.4
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 5.7e-58 228.8 277 44.8
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 7.4e-58 228.4 285 47.0
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.4e-56 224.2 279 46.2
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 1.8e-56 223.8 248 51.2
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.4e-56 223.4 248 48.4
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.4e-56 223.4 237 51.5
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 2.6e-55 219.9 302 46.0
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 4.5e-55 219.2 248 48.0
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 1.3e-54 217.6 291 43.0
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.3e-54 217.6 248 48.4
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.5e-53 213.4 279 42.3
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 4.2e-53 212.6 263 47.5
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 5.5e-53 212.2 277 43.0
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 7.2e-53 211.8 287 40.8
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 9.4e-53 211.5 279 43.0
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 9.4e-53 211.5 279 43.0
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 9.4e-53 211.5 170 67.1
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.6e-52 210.7 299 42.1
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.6e-52 210.7 247 49.4
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.7e-52 209.9 258 47.3
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 4.6e-52 209.1 279 42.7
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.0e-51 208.0 285 41.8
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.3e-51 206.8 258 47.3
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.3e-51 206.8 242 48.3
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 2.3e-51 206.8 212 54.7
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 6.7e-51 205.3 286 42.0
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 6.7e-51 205.3 248 48.4
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 6.7e-51 205.3 295 42.0
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.5e-50 204.1 258 45.3
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 2.5e-50 203.4 258 45.7
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 7.4e-50 201.8 270 45.6
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 7.4e-50 201.8 248 47.6
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 9.7e-50 201.4 270 45.6
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 9.7e-50 201.4 261 47.5
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 2.2e-49 200.3 258 45.7
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 8.2e-49 198.4 248 47.2
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 1.1e-48 198.0 270 45.2
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 1.8e-48 197.2 270 44.8
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.2e-47 194.5 258 46.1
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 1.7e-46 190.7 263 45.2
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 8.5e-46 188.3 264 41.3
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 3.2e-45 186.4 276 39.9
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 3.0e-43 179.9 211 46.0
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 6.7e-43 178.7 213 46.0
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 8.8e-43 178.3 130 68.5
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.6e-42 176.8 275 41.5
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 4.8e-41 172.6 127 66.9
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 4.8e-41 172.6 301 38.9
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.1e-40 171.4 126 67.5
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 4.2e-37 159.5 177 50.8
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 2.0e-34 150.6 212 40.1
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 1.3e-33 147.9 277 34.3
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 1.4e-32 144.4 112 68.8
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 3.5e-31 139.8 190 43.2
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 3.5e-31 139.8 170 47.1
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 2.3e-27 127.1 209 37.8
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 4.0e-27 126.3 98 64.3
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 5.2e-27 125.9 146 47.9
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 1.5e-21 107.8 66 75.8
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 1.9e-21 107.5 253 31.2
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 2.0e-18 97.4 103 49.5
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 1.0e-11 75.1 179 33.5
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.8e-08 64.3 82 43.9
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 3.2e-08 63.5 76 44.7
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 9.2e-08 62.0 82 40.2
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.3e-06 57.4 129 34.9


User provided reference genes

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