Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 3.9e-232 807.7 406 100.0
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 3.8e-142 508.8 396 68.9
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 5.4e-133 478.4 410 63.4
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 5.6e-122 441.8 403 61.5
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 8.2e-121 438.0 405 60.2
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 1.5e-114 417.2 405 57.0
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 9.0e-112 407.9 303 68.0
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 5.9e-111 405.2 352 61.4
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 1.3e-110 404.1 299 66.9
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 1.7e-110 403.7 407 57.0
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 2.2e-110 403.3 352 61.1
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 5.0e-110 402.1 300 67.0
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 7.2e-109 398.3 300 65.7
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 2.7e-108 396.4 469 51.0
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 3.6e-108 396.0 361 59.0
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 6.1e-108 395.2 406 55.2
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 3.9e-107 392.5 384 56.5
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 2.5e-106 389.8 363 57.0
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 3.3e-106 389.4 284 68.7
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 3.3e-106 389.4 275 69.5
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 7.4e-106 388.3 278 68.7
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 1.7e-105 387.1 299 65.2
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 1.7e-105 387.1 272 71.3
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 3.7e-105 386.0 292 66.8
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 6.3e-105 385.2 305 62.0
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 1.1e-104 384.4 296 63.9
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 2.4e-104 383.3 405 55.8
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 9.1e-104 381.3 273 69.2
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 2.6e-103 379.8 296 63.5
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 2.6e-103 379.8 301 61.8
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 3.4e-103 379.4 297 64.0
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 7.7e-103 378.3 379 56.7
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 1.0e-102 377.9 283 67.1
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 1.7e-102 377.1 332 58.7
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 1.7e-102 377.1 299 63.9
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 3.8e-102 375.9 274 68.6
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 1.9e-101 373.6 278 64.4
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 2.5e-101 373.2 278 66.2
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 3.2e-101 372.9 278 66.9
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 3.2e-101 372.9 371 55.0
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 7.2e-101 371.7 301 62.1
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 7.2e-101 371.7 403 52.4
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 7.2e-101 371.7 303 62.7
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 1.2e-100 370.9 331 58.3
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 2.1e-100 370.2 300 62.0
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 2.1e-100 370.2 283 65.0
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 3.6e-100 369.4 288 65.3
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 4.7e-100 369.0 301 61.8
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 7.9e-100 368.2 283 64.7
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 1.0e-99 367.9 299 61.9
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 1.0e-99 367.9 306 61.8
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 1.4e-99 367.5 292 64.4
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 1.8e-99 367.1 299 62.9
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 3.0e-99 366.3 277 66.8
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 3.0e-99 366.3 282 65.6
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 6.7e-99 365.2 298 62.8
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 1.5e-98 364.0 397 52.1
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 2.0e-98 363.6 281 64.4
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 2.6e-98 363.2 288 62.8
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 3.3e-98 362.8 298 62.1
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 3.3e-98 362.8 334 56.6
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 4.4e-98 362.5 304 62.5
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 7.4e-98 361.7 272 64.7
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 7.4e-98 361.7 297 60.6
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 7.4e-98 361.7 301 63.5
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.7e-97 360.5 275 65.8
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 3.7e-97 359.4 305 61.6
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 4.8e-97 359.0 353 57.8
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 6.3e-97 358.6 306 59.2
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 8.2e-97 358.2 298 60.4
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.1e-96 357.8 298 60.4
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 1.1e-96 357.8 299 61.5
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.4e-96 357.5 296 60.1
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 1.4e-96 357.5 308 60.1
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 1.4e-96 357.5 402 50.7
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 1.8e-96 357.1 403 51.4
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 2.4e-96 356.7 322 59.0
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 5.3e-96 355.5 281 63.7
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 2.0e-95 353.6 337 55.2
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 7.7e-95 351.7 300 59.0
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.0e-94 351.3 281 62.6
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 1.3e-94 350.9 300 58.7
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 1.7e-94 350.5 335 55.2
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 3.8e-94 349.4 300 58.7
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.1e-93 347.8 281 63.0
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 2.5e-93 346.7 296 58.8
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 4.2e-93 345.9 299 58.5
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 9.4e-93 344.7 296 58.4
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 6.1e-92 342.0 300 58.7
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 8.0e-92 341.7 295 59.0
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 6.7e-91 338.6 279 60.6
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 8.8e-91 338.2 234 69.2
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 1.1e-90 337.8 300 58.3
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 1.5e-90 337.4 301 58.5
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 1.5e-90 337.4 301 58.5
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 4.4e-90 335.9 301 58.1
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 4.4e-90 335.9 301 58.1
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 2.2e-89 333.6 344 52.9
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 4.8e-89 332.4 303 56.1
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 6.3e-89 332.0 281 61.2
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 9.1e-88 328.2 275 63.6
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 9.1e-88 328.2 403 47.1
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 1.0e-86 324.7 322 54.7
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 2.2e-86 323.6 285 58.9
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 4.2e-85 319.3 345 52.2
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 1.6e-84 317.4 269 59.5
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 1.7e-81 307.4 342 51.8
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 3.7e-81 306.2 358 48.9
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 4.5e-79 299.3 256 59.4
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 7.7e-79 298.5 239 61.5
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 9.4e-77 291.6 227 62.1
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 2.0e-74 283.9 238 62.6
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 4.5e-71 272.7 281 52.0
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 1.6e-68 264.2 271 52.4
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 1.4e-64 251.1 230 56.1
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.5e-61 241.1 286 45.5
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 5.6e-61 239.2 197 61.4
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 1.7e-57 227.6 190 56.3
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 4.7e-52 209.5 299 43.1
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 6.8e-43 179.1 249 42.2
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 1.7e-41 174.5 263 43.0
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 6.8e-35 152.5 138 58.0
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 3.4e-34 150.2 146 56.8
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 1.2e-23 115.2 339 28.6
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 2.6e-18 97.4 69 69.6
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 7.6e-18 95.9 72 62.5
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 4.8e-12 76.6 54 68.5
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 8.1e-12 75.9 80 45.0
SEGI_34336 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 3.0e-06 57.4 33 84.8


User provided reference genes

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