Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 1.2e-258 896.0 439 100.0
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 1.1e-128 464.2 422 57.3
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 3.2e-123 446.0 436 53.2
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 2.9e-108 396.4 341 57.2
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 8.1e-82 308.5 428 39.0
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 6.4e-79 298.9 425 39.8
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 1.1e-78 298.1 418 40.2
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 1.4e-78 297.7 426 38.7
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 1.2e-77 294.7 457 38.3
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 1.3e-76 291.2 431 39.0
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 2.3e-76 290.4 424 39.2
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 3.3e-75 286.6 425 40.0
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 1.6e-69 267.7 420 36.7
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 8.7e-68 261.9 414 34.5
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 1.9e-67 260.8 420 34.5
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.9e-67 260.8 416 34.9
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 2.8e-66 256.9 420 35.0
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 1.8e-65 254.2 425 34.8
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 3.4e-64 250.0 428 35.3
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 5.8e-64 249.2 415 35.2
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 7.6e-64 248.8 430 36.0
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 1.3e-63 248.1 424 32.8
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 8.4e-63 245.4 415 33.0
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 1.1e-62 245.0 416 35.8
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.4e-62 244.6 413 35.4
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 5.4e-62 242.7 414 32.1
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 7.1e-62 242.3 412 32.0
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 3.5e-61 240.0 335 40.0
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 6.0e-61 239.2 433 34.2
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 1.3e-60 238.0 421 34.9
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 1.7e-60 237.7 417 34.5
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 3.0e-60 236.9 435 34.3
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 3.0e-60 236.9 435 34.3
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 3.0e-60 236.9 419 34.1
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 5.1e-60 236.1 425 32.9
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 6.6e-60 235.7 423 32.2
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 2.5e-59 233.8 419 33.4
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 3.3e-59 233.4 359 35.1
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 3.6e-58 229.9 416 33.2
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.2e-58 229.2 424 32.5
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 6.2e-58 229.2 421 33.0
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 1.1e-57 228.4 413 32.9
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 1.1e-57 228.4 422 32.9
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.1e-57 226.9 419 32.9
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 3.1e-57 226.9 443 31.2
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 4.0e-57 226.5 420 32.4
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 4.0e-57 226.5 415 33.7
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 6.9e-57 225.7 335 39.4
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 9.0e-57 225.3 430 33.7
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 2.0e-56 224.2 415 34.7
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 3.4e-56 223.4 425 33.2
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 5.8e-56 222.6 417 33.6
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 1.3e-55 221.5 385 33.5
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 1.7e-55 221.1 422 33.2
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 2.9e-55 220.3 406 34.2
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 4.9e-55 219.5 411 33.1
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 8.4e-55 218.8 425 33.4
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 5.4e-54 216.1 415 34.0
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 5.4e-54 216.1 353 35.1
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 9.3e-54 215.3 410 32.0
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 1.6e-53 214.5 422 33.4
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.0e-52 211.8 431 30.2
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 1.8e-52 211.1 431 32.0
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 3.0e-52 210.3 423 31.9
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 3.9e-52 209.9 451 30.6
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 3.9e-52 209.9 433 30.5
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 6.7e-52 209.1 424 30.0
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 6.7e-52 209.1 340 34.1
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 1.5e-51 208.0 429 31.9
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 5.6e-51 206.1 451 30.6
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 5.6e-51 206.1 560 27.3
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.1e-50 204.1 420 29.8
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 2.1e-50 204.1 426 29.6
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 2.8e-50 203.8 446 30.3
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 1.1e-49 201.8 413 32.9
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.4e-49 201.4 344 35.2
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.4e-49 200.7 407 32.4
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.9e-49 199.1 418 31.3
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 1.2e-48 198.4 431 30.2
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 4.5e-48 196.4 420 31.7
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.5e-48 196.4 420 31.7
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 4.5e-48 196.4 336 36.0
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 7.6e-48 195.7 428 30.6
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 1.7e-47 194.5 418 29.9
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 6.5e-47 192.6 413 30.3
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 3.2e-46 190.3 423 30.5
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 9.3e-46 188.7 337 34.1
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-45 188.3 417 31.7
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 1.6e-45 188.0 449 27.2
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 1.0e-44 185.3 417 31.2
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.0e-44 183.7 420 28.6
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 2.5e-43 180.6 424 30.0
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.7e-43 179.5 426 28.9
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 7.4e-43 179.1 420 29.0
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 9.6e-43 178.7 360 30.8
Dinv21311 Davidia involucrata HOM05D003575 ORTHO05D003587 1.3e-42 178.3 261 39.5
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 1.6e-42 177.9 419 29.6
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 9.0e-41 172.2 419 30.3
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 7.6e-40 169.1 454 26.2
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 1.0e-39 168.7 372 29.6
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 1.2e-37 161.8 348 31.6
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 3.5e-37 160.2 404 27.2
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.3e-36 158.3 411 27.0
Cc00_g01040 Coffea canephora HOM05D003575 ORTHO05D003587 2.4e-33 147.5 217 38.2
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 2.4e-33 147.5 407 27.3
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 4.1e-33 146.7 345 28.4
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 1.2e-32 145.2 413 25.9
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 1.5e-32 144.8 175 40.0
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 2.1e-29 134.4 164 40.2
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 4.6e-29 133.3 165 41.2
Medtr3g082740 Medicago truncatula HOM05D003575 ORTHO05D003587 1.4e-28 131.7 301 29.2
Dinv26593 Davidia involucrata HOM05D003575 ORTHO05D003587 7.4e-27 125.9 164 43.3
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 1.3e-26 125.2 171 36.3
Hund01540 Selenicereus undatus HOM05D003575 ORTHO05D003587 2.8e-26 124.0 382 24.3
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 3.7e-26 123.6 166 36.7
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 6.3e-26 122.9 354 24.3
FAN15G3143 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.1e-25 120.6 166 38.0
FvH4_2g12920 Fragaria vesca HOM05D003575 ORTHO05D003587 9.1e-25 119.0 166 37.3
FAN24G1566 Fragaria x ananassa HOM05D003575 ORTHO05D003587 9.1e-25 119.0 166 37.3
FAN20G0397 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.5e-24 118.2 166 36.7
TPR.G40538 Trifolium pratense HOM05D003575 ORTHO05D003587 2.0e-24 117.9 150 38.0
PGSC0003DMG400017442 Solanum tuberosum HOM05D003575 ORTHO05D003587 2.6e-24 117.5 208 35.6
MD09G1128800 Malus domestica HOM05D003575 ORTHO05D003587 4.5e-24 116.7 156 41.7
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 7.7e-24 115.9 149 37.6
PSO013G0119 Papaver somniferum HOM05D003575 ORTHO05D003587 1.3e-23 115.2 165 33.3
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 1.7e-23 114.8 166 36.1
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 3.8e-23 113.6 149 36.2
PSO591G0010 Papaver somniferum HOM05D003575 ORTHO05D003587 3.8e-23 113.6 171 33.9
Aqoxy4G01549 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 6.5e-23 112.8 162 35.2
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 8.5e-23 112.5 165 33.3
RcHm_v2.0_Chr2g0155781 Rosa chinensis HOM05D003575 ORTHO05D003587 4.2e-22 110.2 166 36.7
PSO339G1364 Papaver somniferum HOM05D003575 ORTHO05D003587 5.5e-22 109.8 166 32.5
PSO339G4641 Papaver somniferum HOM05D003575 ORTHO05D003587 5.5e-22 109.8 166 32.5
PSO170G1005 Papaver somniferum HOM05D003575 ORTHO05D003587 9.4e-22 109.0 173 34.1
RcHm_v2.0_Chr2g0155771 Rosa chinensis HOM05D003575 ORTHO05D003587 9.4e-22 109.0 155 36.1
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-21 108.6 165 32.7
RcHm_v2.0_Chr2g0155791 Rosa chinensis HOM05D003575 ORTHO05D003587 2.1e-21 107.8 174 32.8
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.7e-21 107.5 134 41.0
THA.LOC104812766 Tarenaya hassleriana HOM05D003575 ORTHO05D003587 2.7e-21 107.5 166 36.7
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 4.7e-21 106.7 165 31.5
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 3.9e-20 103.6 172 33.7
AL7G27800 Arabidopsis lyrata HOM05D003575 ORTHO05D003587 3.3e-19 100.5 165 33.3
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 3.3e-19 100.5 165 32.1
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 3.3e-19 100.5 165 32.1
MBI15_g06462_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 4.4e-19 100.1 300 28.0
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 1.3e-18 98.6 100 48.0
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 2.2e-18 97.8 165 32.1
PSO013G0266 Papaver somniferum HOM05D003575 ORTHO05D003587 2.8e-18 97.4 167 31.7
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 8.2e-18 95.9 168 32.1
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 1.8e-17 94.7 165 31.5
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.8e-17 94.7 114 43.0
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 3.1e-17 94.0 165 31.5
FAN14G1012 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.1e-17 94.0 167 32.9
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 4.1e-17 93.6 165 31.5
FAN16G0569 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.1e-17 93.6 224 32.1
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 2.0e-16 91.3 58 72.4
Zm00001eb287050 Zea mays HOM05D003575 ORTHO05D003587 2.0e-16 91.3 157 33.1
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 5.9e-16 89.7 165 30.3
FvH4_6g40520 Fragaria vesca HOM05D003575 ORTHO05D003587 7.7e-16 89.4 82 48.8
PSO017G4852 Papaver somniferum HOM05D003575 ORTHO05D003587 7.7e-16 89.4 136 33.8
Lsat_1_v5_gn_8_78381 Lactuca sativa HOM05D003575 ORTHO05D003587 1.7e-15 88.2 125 36.0
MBI15_g48140_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 2.2e-15 87.8 104 42.3
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 8.5e-15 85.9 119 39.5
Sp7g23350 Schrenkiella parvula HOM05D003575 ORTHO05D003587 8.5e-15 85.9 172 30.8
FAN14G3058 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.9e-14 84.7 109 35.8
Oeu041110.1 Olea europaea HOM05D003575 ORTHO05D003587 1.6e-13 81.6 147 35.4
PSO017G1253 Papaver somniferum HOM05D003575 ORTHO05D003587 6.1e-13 79.7 144 29.9
PSO339G5808 Papaver somniferum HOM05D003575 ORTHO05D003587 1.4e-12 78.6 138 34.1
PSO339G3010 Papaver somniferum HOM05D003575 ORTHO05D003587 1.8e-12 78.2 101 42.6
CAN.G437.9 Capsicum annuum HOM05D003575 ORTHO05D003587 2.3e-12 77.8 207 30.0
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 3.0e-12 77.4 100 37.0
Os05g0386400 Oryza sativa ssp. japonica HOM05D003575 ORTHO05D003587 6.7e-12 76.3 180 28.3
Aqoxy91s001 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 5.7e-11 73.2 115 32.2
Zm00001eb264990 Zea mays HOM05D003575 ORTHO05D003587 7.5e-11 72.8 105 31.4
Hund01541 Selenicereus undatus HOM05D009102 ORTHO05D003587 1.8e-09 68.2 100 40.0
FvH4_3g20450 Fragaria vesca HOM05D039614 ORTHO05D045963 5.3e-09 66.6 89 34.8
FAN11G0216 Fragaria x ananassa HOM05D003575 ORTHO05D045963 5.3e-09 66.6 89 34.8
Pp3c24_6860 Physcomitrium patens HOM05D003575 ORTHO05D003587 5.3e-09 66.6 154 30.5
Mapoly0033s0032 Marchantia polymorpha HOM05D003575 ORTHO05D003587 7.0e-09 66.2 227 27.8
Glyma.15G224002 Glycine max HOM05D003575 ORTHO05D003587 5.9e-08 63.2 72 37.5
Mapoly0066s0003 Marchantia polymorpha HOM05D040683 ORTHO05D003587 7.7e-08 62.8 144 33.3
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 1.3e-07 62.0 64 46.9
SEGI_27817 Sequoiadendron giganteum HOM05D003575 ORTHO05D003587 1.3e-07 62.0 104 39.4
Dinv26594 Davidia involucrata HOM05D000074 ORTHO05D001293 5.0e-07 60.1 75 42.7
MD09G1128900 Malus domestica HOM05D003575 ORTHO05D003587 1.9e-06 58.2 62 40.3
Mapoly0072s0063 Marchantia polymorpha HOM05D040683 ORTHO05D003587 9.4e-06 55.8 141 29.8


User provided reference genes

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