Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 1.4e-78 296.6 195 100.0
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 1.3e-47 193.7 188 60.6
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 2.2e-47 193.0 194 57.7
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 1.4e-46 190.3 194 57.7
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 1.0e-44 184.1 195 60.5
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 2.3e-44 183.0 192 56.2
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 4.6e-37 158.7 188 51.6
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.1e-35 154.1 195 51.8
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 5.2e-33 145.2 193 47.7
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 4.4e-32 142.1 185 47.0
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 5.8e-32 141.7 199 44.2
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 2.2e-31 139.8 177 46.9
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 2.2e-31 139.8 181 46.4
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 1.9e-30 136.7 201 50.7
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 3.2e-30 136.0 201 49.3
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 9.3e-30 134.4 201 48.8
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 7.8e-29 131.3 194 43.3
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 5.1e-28 128.6 184 43.5
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 8.7e-28 127.9 177 45.8
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.1e-27 127.5 195 42.1
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 1.9e-27 126.7 174 53.4
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 3.3e-27 125.9 200 48.5
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 7.3e-27 124.8 171 42.7
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 7.3e-27 124.8 178 43.8
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 2.1e-26 123.2 171 42.1
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 2.1e-26 123.2 153 44.4
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 2.8e-26 122.9 176 53.4
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 2.8e-26 122.9 195 42.1
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 3.6e-26 122.5 177 45.8
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 3.6e-26 122.5 157 45.2
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 4.8e-26 122.1 153 43.8
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 8.1e-26 121.3 191 49.2
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 8.1e-26 121.3 174 51.1
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 1.1e-25 120.9 170 41.2
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 2.4e-25 119.8 156 46.2
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 2.4e-25 119.8 179 39.7
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 2.4e-25 119.8 164 42.7
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 4.0e-25 119.0 175 41.1
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 4.0e-25 119.0 175 41.7
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 1.2e-24 117.5 164 42.7
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 1.5e-24 117.1 165 52.7
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 2.0e-24 116.7 195 45.6
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 2.6e-24 116.3 169 53.8
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 4.5e-24 115.5 156 45.5
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 5.8e-24 115.2 173 41.0
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 7.6e-24 114.8 181 44.2
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 7.6e-24 114.8 179 41.3
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 7.6e-24 114.8 180 42.2
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 9.9e-24 114.4 187 41.7
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.3e-23 114.0 175 41.1
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 1.7e-23 113.6 165 50.3
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 1.7e-23 113.6 156 44.2
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 2.2e-23 113.2 183 52.5
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 2.2e-23 113.2 192 52.1
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 3.8e-23 112.5 189 39.7
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 6.4e-23 111.7 192 40.6
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 1.1e-22 110.9 193 39.4
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 1.1e-22 110.9 169 41.4
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 1.4e-22 110.5 156 42.3
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 1.4e-22 110.5 186 42.5
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 1.9e-22 110.2 156 42.3
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 2.4e-22 109.8 169 41.4
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.2e-22 109.4 187 41.2
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 4.2e-22 109.0 187 41.2
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.4e-22 108.6 187 41.2
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 7.1e-22 108.2 177 38.4
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 7.1e-22 108.2 200 45.5
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 9.3e-22 107.8 172 39.0
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 1.2e-21 107.5 156 42.3
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 2.1e-21 106.7 175 40.6
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 3.5e-21 105.9 164 41.5
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 1.0e-20 104.4 158 50.6
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 1.3e-20 104.0 158 44.9
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 3.0e-20 102.8 179 46.4
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 3.9e-20 102.4 165 47.9
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 3.9e-20 102.4 167 49.1
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 5.1e-20 102.1 193 37.8
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 6.7e-20 101.7 193 37.3
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 6.7e-20 101.7 193 37.3
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 6.7e-20 101.7 196 42.3
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 2.5e-19 99.8 194 51.5
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 2.5e-19 99.8 198 43.4
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 5.6e-19 98.6 217 33.2
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 3.7e-18 95.9 195 35.4
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 3.7e-18 95.9 195 35.4
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 3.7e-18 95.9 143 46.9
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 4.8e-18 95.5 179 38.5
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 1.1e-17 94.4 75 66.7
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 2.4e-17 93.2 171 42.7
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 4.0e-17 92.4 156 35.9
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 1.2e-16 90.9 150 37.3
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.4e-16 89.4 170 38.2
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.4e-16 89.4 170 38.2
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 5.8e-16 88.6 156 34.0
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 1.3e-15 87.4 235 31.5
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 1.7e-15 87.0 191 42.9
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 1.4e-14 84.0 175 34.9
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 1.4e-14 84.0 198 41.9
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 3.2e-14 82.8 186 34.9
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 4.2e-14 82.4 151 45.7
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 4.2e-14 82.4 151 45.7
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 4.2e-14 82.4 123 44.7
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 4.2e-14 82.4 156 37.2
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 1.2e-13 80.9 179 41.3
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 1.6e-13 80.5 191 34.6
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 3.5e-13 79.3 167 33.5
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 1.8e-12 77.0 196 48.5
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 5.1e-12 75.5 191 31.9
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 6.7e-12 75.1 183 40.4
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 8.7e-12 74.7 224 29.9
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 9.6e-11 71.2 182 40.7
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 1.6e-10 70.5 161 28.6
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 2.1e-10 70.1 158 41.8
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 1.1e-09 67.8 153 43.1
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 3.1e-09 66.2 116 37.1
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.1e-09 66.2 57 63.2
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 9.0e-09 64.7 162 46.9
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 9.0e-09 64.7 69 52.2
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 1.5e-08 63.9 62 54.8
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 2.0e-08 63.5 147 51.7
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 7.6e-08 61.6 62 54.8
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 1.0e-07 61.2 178 32.6
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 2.2e-07 60.1 89 42.7
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 2.2e-07 60.1 89 42.7
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 6.5e-07 58.5 62 51.6
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 8.4e-07 58.2 195 32.8
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 1.4e-06 57.4 196 36.7
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 1.4e-06 57.4 184 32.1
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 4.2e-06 55.8 53 58.5
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 4.2e-06 55.8 175 27.4


User provided reference genes

Program Settings