Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4182 Avicennia marina HOM05D002652 ORTHO05D002739 7.8e-126 453.8 221 100.0
MSTRG.4180 Avicennia marina HOM05D002652 ORTHO05D002739 1.6e-57 226.9 228 56.6
MSTRG.4181 Avicennia marina HOM05D002652 ORTHO05D002739 4.2e-55 218.8 221 56.1
MSTRG.4186 Avicennia marina HOM05D002652 ORTHO05D002739 5.0e-48 195.3 180 57.2
Migut.N00305 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.2e-36 157.5 213 41.3
SalBow2G1631 Salvia bowleyana HOM05D002652 ORTHO05D002739 2.8e-30 136.3 141 45.4
Migut.N00884 Erythranthe guttata HOM05D002652 ORTHO05D002739 4.9e-27 125.6 147 44.2
Migut.N00889 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.0e-24 117.9 162 41.4
Migut.N00887 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.3e-24 117.5 167 41.9
Migut.N00886 Erythranthe guttata HOM05D002652 ORTHO05D002739 2.3e-24 116.7 162 41.4
FAN10G1323 Fragaria x ananassa HOM05D002652 ORTHO05D002739 3.6e-22 109.4 180 38.3
FAN10G2095 Fragaria x ananassa HOM05D002652 ORTHO05D002739 3.6e-22 109.4 180 38.3
Aqoxy7G00431 Aquilegia oxysepala HOM05D002652 ORTHO05D002739 6.2e-22 108.6 158 40.5
MSTRG.4179 Avicennia marina HOM05D002652 ORTHO05D002739 1.8e-21 107.1 145 40.0
Migut.N00306 Erythranthe guttata HOM05D002652 ORTHO05D002739 2.6e-20 103.2 146 41.8
FAN12G2993 Fragaria x ananassa HOM05D002652 ORTHO05D002739 2.6e-20 103.2 180 35.0
Sabra11G0121600 Salix brachista HOM05D002652 ORTHO05D002739 2.6e-20 103.2 146 39.0
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 2.6e-20 103.2 161 36.6
COL.COLO4_15909 Corchorus olitorius HOM05D002652 ORTHO05D002739 1.3e-19 100.9 158 36.7
Sabra19G0035700 Salix brachista HOM05D002652 ORTHO05D002739 1.3e-19 100.9 148 38.5
CiPaw.08G106600 Carya illinoinensis HOM05D002652 ORTHO05D002739 1.7e-19 100.5 159 38.4
Potri.019G029100 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.7e-19 100.5 150 38.7
CiPaw.08G106400 Carya illinoinensis HOM05D002652 ORTHO05D002739 2.2e-19 100.1 192 33.9
Migut.G00568 Erythranthe guttata HOM05D002652 ORTHO05D002739 3.7e-19 99.4 151 37.1
Rhsim02G0046900 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.9e-19 99.0 159 37.7
Migut.N00883 Erythranthe guttata HOM05D002652 ORTHO05D002739 8.3e-19 98.2 129 39.5
Oeu059391.1 Olea europaea HOM05D002652 ORTHO05D002739 8.3e-19 98.2 148 35.8
COL.COLO4_15901 Corchorus olitorius HOM05D002652 ORTHO05D002739 1.1e-18 97.8 151 37.1
SalBow3G3644 Salvia bowleyana HOM05D002652 ORTHO05D002739 1.9e-18 97.1 140 37.9
COL.COLO4_15898 Corchorus olitorius HOM05D002652 ORTHO05D002739 2.4e-18 96.7 149 37.6
COL.COLO4_15907 Corchorus olitorius HOM05D002652 ORTHO05D002739 3.2e-18 96.3 151 36.4
FAN12G4037 Fragaria x ananassa HOM05D002652 ORTHO05D002739 3.2e-18 96.3 172 37.2
Sabra19G0035200 Salix brachista HOM05D002652 ORTHO05D002739 3.2e-18 96.3 147 38.1
Sabra19G0035400 Salix brachista HOM05D002652 ORTHO05D002739 3.2e-18 96.3 147 38.1
COL.COLO4_15902 Corchorus olitorius HOM05D002652 ORTHO05D002739 4.1e-18 95.9 151 35.1
Aa31LG9G4210 Aethionema arabicum HOM05D002652 ORTHO05D002739 5.4e-18 95.5 146 35.6
FvH4_4g04740 Fragaria vesca HOM05D002652 ORTHO05D002739 7.1e-18 95.1 178 34.3
Potri.019G026820 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.6e-17 94.0 147 38.1
Hma1.2p1_0385F.1_g141620 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 2.1e-17 93.6 151 35.1
CiPaw.08G106800 Carya illinoinensis HOM05D002652 ORTHO05D002739 3.5e-17 92.8 159 35.2
Rhsim02G0045100 Rhododendron simsii HOM05D002652 ORTHO05D002739 3.5e-17 92.8 143 33.6
Sabra19G0038900 Salix brachista HOM05D002652 ORTHO05D002739 3.5e-17 92.8 148 37.8
Ciclev10005927m.g Citrus clementina HOM05D002652 ORTHO05D002739 7.8e-17 91.7 152 34.2
Oeu011206.1 Olea europaea HOM05D002652 ORTHO05D002739 7.8e-17 91.7 95 46.3
Aa31LG9G4200 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.3e-16 90.9 152 34.2
FAN17G3082 Fragaria x ananassa HOM05D002652 ORTHO05D002739 1.3e-16 90.9 183 36.1
Nn5g27876 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.3e-16 90.9 158 32.3
Potri.019G026780 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.3e-16 90.9 147 38.8
RcHm_v2.0_Chr4g0395751 Rosa chinensis HOM05D002652 ORTHO05D002739 1.7e-16 90.5 147 36.1
Carub.0007s2911 Capsella rubella HOM05D002652 ORTHO05D002739 2.3e-16 90.1 163 33.1
Potri.019G026860 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.3e-16 90.1 147 36.7
TAR174G0001 Trochodendron aralioides HOM05D002652 ORTHO05D002739 2.3e-16 90.1 151 35.8
QL06p021327 Quercus lobata HOM05D002652 ORTHO05D002739 3.0e-16 89.7 144 37.5
QL08p018841 Quercus lobata HOM05D002652 ORTHO05D002739 3.0e-16 89.7 204 30.9
Cfa014794 Carpinus fangiana HOM05D002652 ORTHO05D002739 3.9e-16 89.4 144 38.2
ECA247G3161 Erigeron canadensis HOM05D002652 ORTHO05D002739 3.9e-16 89.4 151 33.8
Potri.019G027440 Populus trichocarpa HOM05D002652 ORTHO05D002739 3.9e-16 89.4 147 36.7
TAR636G2313 Trochodendron aralioides HOM05D002652 ORTHO05D002739 3.9e-16 89.4 188 32.4
GSVIVG01027929001 Vitis vinifera HOM05D002652 ORTHO05D002739 3.9e-16 89.4 203 29.6
RhsimUnG0195300 Rhododendron simsii HOM05D002652 ORTHO05D002739 5.1e-16 89.0 151 31.8
Sabra19G0038300 Salix brachista HOM05D002652 ORTHO05D002739 5.1e-16 89.0 147 38.1
vmacro15484 Vaccinium macrocarpon HOM05D002652 ORTHO05D002739 6.6e-16 88.6 151 37.7
Haze_11472 Corylus avellana HOM05D002652 ORTHO05D002739 8.6e-16 88.2 146 35.6
DCAR_002582 Daucus carota HOM05D002652 ORTHO05D002739 8.6e-16 88.2 148 33.8
Potri.019G027200 Populus trichocarpa HOM05D002652 ORTHO05D002739 8.6e-16 88.2 147 37.4
Sabra19G0038400 Salix brachista HOM05D002652 ORTHO05D002739 8.6e-16 88.2 148 35.1
RcHm_v2.0_Chr4g0395571 Rosa chinensis HOM05D002652 ORTHO05D002739 1.1e-15 87.8 169 35.5
Sabra19G0038800 Salix brachista HOM05D002652 ORTHO05D002739 1.1e-15 87.8 147 37.4
Sabra19G0039000 Salix brachista HOM05D002652 ORTHO05D002739 1.1e-15 87.8 148 34.5
RhsimUnG0058100 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.5e-15 87.4 147 36.1
Sabra19G0038500 Salix brachista HOM05D002652 ORTHO05D002739 1.5e-15 87.4 147 36.7
TAR365G0384 Trochodendron aralioides HOM05D002652 ORTHO05D002739 1.9e-15 87.0 174 35.1
Ciclev10006564m.g Citrus clementina HOM05D002652 ORTHO05D002739 2.5e-15 86.7 177 32.2
HanXRQChr07g0194071 Helianthus annuus HOM05D002652 ORTHO05D002739 3.3e-15 86.3 166 31.9
Nn1g00661 Nelumbo nucifera HOM05D002652 ORTHO05D002739 3.3e-15 86.3 163 31.3
vmacro15483 Vaccinium macrocarpon HOM05D002652 ORTHO05D002739 3.3e-15 86.3 144 33.3
RhsimUnG0101000 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.3e-15 85.9 145 33.1
Sabra19G0038700 Salix brachista HOM05D002652 ORTHO05D002739 4.3e-15 85.9 147 36.1
FvH4_4g04980 Fragaria vesca HOM05D002652 ORTHO05D002739 5.6e-15 85.5 151 33.8
FAN12G0867 Fragaria x ananassa HOM05D004511 ORTHO05D005348 5.6e-15 85.5 151 33.8
GSVIVG01027930001 Vitis vinifera HOM05D002652 ORTHO05D002739 5.6e-15 85.5 148 31.8
Sabra19G0035100 Salix brachista HOM05D002652 ORTHO05D002739 9.5e-15 84.7 211 27.0
Rhsim02G0047400 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.2e-14 84.3 145 33.1
Nn1g00658 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.6e-14 84.0 159 30.2
Rhsim02G0044400 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.6e-14 84.0 137 37.2
Rhsim02G0044800 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.6e-14 84.0 147 34.7
Rhsim02G0046500 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.6e-14 84.0 137 37.2
RhsimUnG0058300 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.6e-14 84.0 146 37.7
Potri.T121000 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.1e-14 83.6 152 30.9
Prupe.1G050000 Prunus persica HOM05D002652 ORTHO05D002739 2.1e-14 83.6 170 32.9
COL.COLO4_15900 Corchorus olitorius HOM05D002652 ORTHO05D002739 2.8e-14 83.2 148 35.1
Hma1.2p1_0565F.1_g179480 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 2.8e-14 83.2 151 33.1
Nn1g00657 Nelumbo nucifera HOM05D002652 ORTHO05D002739 3.6e-14 82.8 153 34.0
Potri.019G028800 Populus trichocarpa HOM05D002652 ORTHO05D002739 3.6e-14 82.8 149 36.9
Hma1.2p1_0042F.1_g025730 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 4.7e-14 82.4 151 31.8
Potri.019G026900 Populus trichocarpa HOM05D002652 ORTHO05D002739 6.2e-14 82.0 148 37.2
Potri.019G027100 Populus trichocarpa HOM05D002652 ORTHO05D002739 6.2e-14 82.0 148 37.2
Potri.T121200 Populus trichocarpa HOM05D002652 ORTHO05D002739 6.2e-14 82.0 145 32.4
Potri.T121301 Populus trichocarpa HOM05D002652 ORTHO05D002739 6.2e-14 82.0 145 32.4
Thecc.04G266900 Theobroma cacao HOM05D002652 ORTHO05D002739 6.2e-14 82.0 213 30.5
CARHR219080 Cardamine hirsuta HOM05D002652 ORTHO05D002739 8.1e-14 81.6 171 32.2
Dinv29797 Davidia involucrata HOM05D002652 ORTHO05D002739 1.1e-13 81.3 215 29.3
Lsat_1_v5_gn_2_104120 Lactuca sativa HOM05D002652 ORTHO05D002739 1.1e-13 81.3 152 29.6
RcHm_v2.0_Chr5g0024661 Rosa chinensis HOM05D002652 ORTHO05D002739 1.1e-13 81.3 142 34.5
Sabra19G0035500 Salix brachista HOM05D002652 ORTHO05D002739 1.1e-13 81.3 147 30.6
CSS0031417 Camellia sinensis var. sinensis HOM05D002652 ORTHO05D002739 1.4e-13 80.9 151 29.1
Nn1g00655 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.4e-13 80.9 157 29.9
FvH4_4g04990 Fragaria vesca HOM05D002652 ORTHO05D002739 1.8e-13 80.5 144 33.3
Oeu020135.1 Olea europaea HOM05D002652 ORTHO05D002739 1.8e-13 80.5 146 31.5
Duzib151G0030 Durio zibethinus HOM05D002652 ORTHO05D002739 3.1e-13 79.7 190 30.0
Rhsim02G0046300 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.0e-13 79.3 138 36.2
A09p20860 Brassica napus HOM05D002652 ORTHO05D002739 8.9e-13 78.2 164 29.9
RcHm_v2.0_Chr4g0395461 Rosa chinensis HOM05D002652 ORTHO05D002739 8.9e-13 78.2 144 35.4
Haze_25448 Corylus avellana HOM05D002652 ORTHO05D002739 1.2e-12 77.8 164 29.9
BcaB07g30971 Brassica carinata HOM05D002652 ORTHO05D002739 1.5e-12 77.4 171 28.7
Nn1g00660 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.5e-12 77.4 196 29.1
Actinidia39934 Actinidia chinensis HOM05D002652 ORTHO05D002739 2.0e-12 77.0 166 29.5
BraA09t37688Z Brassica rapa HOM05D002652 ORTHO05D002739 2.6e-12 76.6 164 30.5
CSS0002481 Camellia sinensis var. sinensis HOM05D002652 ORTHO05D002739 2.6e-12 76.6 167 32.3
Cfa021216 Carpinus fangiana HOM05D002652 ORTHO05D002739 2.6e-12 76.6 115 39.1
Potri.019G029000 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.6e-12 76.6 149 33.6
Rhsim02G0046000 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.6e-12 76.6 150 29.3
BcaC04g21865 Brassica carinata HOM05D002652 ORTHO05D002739 4.4e-12 75.9 147 31.3
BolC9t55542H Brassica oleracea HOM05D002652 ORTHO05D002739 4.4e-12 75.9 147 31.3
Haze_11422 Corylus avellana HOM05D001324 ORTHO05D001220 4.4e-12 75.9 158 33.5
RhsimUnG0195100 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.4e-12 75.9 96 40.6
Aa31LG9G4240 Aethionema arabicum HOM05D002652 ORTHO05D002739 5.8e-12 75.5 146 30.1
Ciclev10007025m.g Citrus clementina HOM05D002652 ORTHO05D002739 5.8e-12 75.5 146 32.9
THA.LOC104821630 Tarenaya hassleriana HOM05D002652 ORTHO05D002739 5.8e-12 75.5 161 29.8
Aa31LG9G4330 Aethionema arabicum HOM05D002652 ORTHO05D002739 7.6e-12 75.1 134 30.6
Migut.N00313 Erythranthe guttata HOM05D002652 ORTHO05D002739 7.6e-12 75.1 146 32.2
Potri.019G027000 Populus trichocarpa HOM05D002652 ORTHO05D002739 7.6e-12 75.1 148 35.8
Aa31LG7G1790 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.3e-11 74.3 161 28.6
Aa31LG7G1800 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.3e-11 74.3 146 29.5
Prupe.1G049600 Prunus persica HOM05D002652 ORTHO05D002739 1.3e-11 74.3 147 31.3
Atru.chr4.1903 Acer truncatum HOM05D002652 ORTHO05D002739 1.7e-11 73.9 149 32.9
Duzib151G0998 Durio zibethinus HOM05D002652 ORTHO05D002739 2.2e-11 73.6 158 31.0
Migut.H01091 Erythranthe guttata HOM05D002652 ORTHO05D002739 2.2e-11 73.6 98 42.9
COL.COLO4_15908 Corchorus olitorius HOM05D002652 ORTHO05D002739 2.9e-11 73.2 143 34.3
FvH4_4g04760 Fragaria vesca HOM05D002652 ORTHO05D045822 3.8e-11 72.8 142 33.8
RcHm_v2.0_Chr4g0395551 Rosa chinensis HOM05D002652 ORTHO05D002739 3.8e-11 72.8 232 25.9
Aa31LG7G1660 Aethionema arabicum HOM05D002652 ORTHO05D002739 4.9e-11 72.4 152 30.3
FvH4_4g04860 Fragaria vesca HOM05D002652 ORTHO05D002739 4.9e-11 72.4 172 32.0
Migut.N00315 Erythranthe guttata HOM05D002652 ORTHO05D002739 6.4e-11 72.0 108 36.1
C09p26400 Brassica napus HOM05D002652 ORTHO05D002739 8.4e-11 71.6 147 30.6
Duzib147G0896 Durio zibethinus HOM05D002652 ORTHO05D002739 1.1e-10 71.2 145 26.2
Oeu011205.1 Olea europaea HOM05D002652 ORTHO05D002739 1.1e-10 71.2 208 26.4
Cpa.g.sc59.9 Carica papaya HOM05D002652 ORTHO05D002739 1.4e-10 70.9 152 32.2
Prupe.1G049700 Prunus persica HOM05D002652 ORTHO05D002739 1.4e-10 70.9 150 30.7
Nn1g08811 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.9e-10 70.5 152 31.6
FAN12G2048 Fragaria x ananassa HOM05D002652 ORTHO05D002739 3.2e-10 69.7 233 24.0
TAR636G3443 Trochodendron aralioides HOM05D002652 ORTHO05D002739 3.2e-10 69.7 154 31.8
Rhsim02G0046100 Rhododendron simsii HOM05D002652 ORTHO05D002739 5.4e-10 68.9 145 29.7
FAN25G0267 Fragaria x ananassa HOM05D002652 ORTHO05D002739 9.2e-10 68.2 142 31.0
TAR636G1048 Trochodendron aralioides HOM05D002652 ORTHO05D002739 9.2e-10 68.2 176 28.4
Duzib151G0943 Durio zibethinus HOM05D002652 ORTHO05D002739 1.2e-09 67.8 151 29.8
Migut.O00454 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.2e-09 67.8 159 28.3
Manes.15G046400 Manihot esculenta HOM05D002652 ORTHO05D002739 1.2e-09 67.8 146 31.5
Lsat_1_v5_gn_2_105441 Lactuca sativa HOM05D002652 ORTHO05D002739 1.6e-09 67.4 152 27.0
Rhsim02G0047200 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.1e-09 67.0 147 29.9
COL.COLO4_15987 Corchorus olitorius HOM05D002652 ORTHO05D002739 2.7e-09 66.6 214 26.6
Cpa.g.sc8968.1 Carica papaya HOM05D002652 ORTHO05D002739 4.6e-09 65.9 146 31.5
QL06p021274 Quercus lobata HOM05D002652 ORTHO05D002739 4.6e-09 65.9 144 27.8
Aa31LG7G1670 Aethionema arabicum HOM05D002652 ORTHO05D002739 6.0e-09 65.5 127 29.9
Nn2g14922 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.0e-08 64.7 206 26.2
Aa31LG9G4290 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.3e-08 64.3 117 30.8
AT4G13440 Arabidopsis thaliana HOM05D002652 ORTHO05D002739 1.3e-08 64.3 163 27.6
Sabra19G0038100 Salix brachista HOM05D002652 ORTHO05D002739 3.0e-08 63.2 112 34.8
SalBow2G2144 Salvia bowleyana HOM05D000062 ORTHO05D000043 3.0e-08 63.2 195 23.6
Manes.03G158000 Manihot esculenta HOM05D002652 ORTHO05D002739 5.1e-08 62.4 152 28.9
QL09p048788 Quercus lobata HOM05D002652 ORTHO05D002739 6.6e-08 62.0 118 34.7
Nn1g06038 Nelumbo nucifera HOM05D002652 ORTHO05D002739 8.6e-08 61.6 130 28.5
Migut.G00567 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.9e-07 60.5 149 27.5
Oeu011207.1 Olea europaea HOM05D002652 ORTHO05D002739 2.5e-07 60.1 138 30.4
Rhsim02G0044600 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.5e-07 60.1 149 32.9
Actinidia39935 Actinidia chinensis HOM05D002652 ORTHO05D002739 4.3e-07 59.3 149 28.9
Actinidia11376 Actinidia chinensis HOM05D002652 ORTHO05D002739 1.2e-06 57.8 140 27.1
Prupe.1G050100 Prunus persica HOM05D002652 ORTHO05D002739 1.2e-06 57.8 109 31.2
Sabra19G0035300 Salix brachista HOM05D002652 ORTHO05D002739 4.7e-06 55.8 145 31.0
CiPaw.02G106100 Carya illinoinensis HOM05D002652 ORTHO05D002739 8.1e-06 55.1 129 31.0


User provided reference genes

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