Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4181 Avicennia marina HOM05D002652 ORTHO05D002739 1.8e-125 452.6 225 100.0
MSTRG.4180 Avicennia marina HOM05D002652 ORTHO05D002739 2.6e-100 369.0 227 81.1
MSTRG.4182 Avicennia marina HOM05D002652 ORTHO05D002739 7.4e-55 218.0 221 56.1
MSTRG.4186 Avicennia marina HOM05D002652 ORTHO05D002739 1.9e-42 176.8 167 56.9
Migut.N00305 Erythranthe guttata HOM05D002652 ORTHO05D002739 2.1e-33 146.7 155 50.3
SalBow2G1631 Salvia bowleyana HOM05D002652 ORTHO05D002739 3.8e-27 125.9 183 37.2
Migut.N00884 Erythranthe guttata HOM05D002652 ORTHO05D002739 6.5e-27 125.2 165 40.0
Migut.N00887 Erythranthe guttata HOM05D002652 ORTHO05D002739 3.6e-25 119.4 153 44.4
Migut.N00886 Erythranthe guttata HOM05D002652 ORTHO05D002739 6.1e-25 118.6 145 42.1
COL.COLO4_15902 Corchorus olitorius HOM05D002652 ORTHO05D002739 6.7e-24 115.2 148 40.5
COL.COLO4_15907 Corchorus olitorius HOM05D002652 ORTHO05D002739 1.5e-23 114.0 148 41.2
COL.COLO4_15901 Corchorus olitorius HOM05D002652 ORTHO05D002739 2.0e-23 113.6 148 40.5
Migut.N00889 Erythranthe guttata HOM05D002652 ORTHO05D002739 2.5e-23 113.2 169 38.5
MSTRG.4179 Avicennia marina HOM05D002652 ORTHO05D002739 6.3e-22 108.6 162 37.0
COL.COLO4_15898 Corchorus olitorius HOM05D002652 ORTHO05D002739 3.1e-21 106.3 153 39.2
Potri.019G026820 Populus trichocarpa HOM05D002652 ORTHO05D002739 4.1e-21 105.9 151 39.7
Potri.019G029100 Populus trichocarpa HOM05D002652 ORTHO05D002739 4.1e-21 105.9 163 37.4
COL.COLO4_15909 Corchorus olitorius HOM05D002652 ORTHO05D002739 5.3e-21 105.5 151 40.4
Potri.019G026780 Populus trichocarpa HOM05D002652 ORTHO05D002739 9.1e-21 104.8 151 39.1
Aqoxy7G00431 Aquilegia oxysepala HOM05D002652 ORTHO05D002739 3.4e-20 102.8 158 39.9
Migut.N00883 Erythranthe guttata HOM05D002652 ORTHO05D002739 4.5e-20 102.4 137 38.0
Potri.019G027440 Populus trichocarpa HOM05D002652 ORTHO05D002739 5.9e-20 102.1 151 37.7
Sabra19G0035700 Salix brachista HOM05D002652 ORTHO05D002739 7.7e-20 101.7 152 36.8
Sabra19G0035200 Salix brachista HOM05D002652 ORTHO05D002739 1.0e-19 101.3 169 36.7
Sabra19G0035400 Salix brachista HOM05D002652 ORTHO05D002739 1.0e-19 101.3 169 36.7
Sabra19G0038500 Salix brachista HOM05D002652 ORTHO05D002739 1.3e-19 100.9 159 37.1
Potri.019G026900 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.7e-19 100.5 150 40.0
Potri.019G027100 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.7e-19 100.5 150 40.0
Potri.019G028800 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.7e-19 100.5 151 39.7
Sabra19G0038300 Salix brachista HOM05D002652 ORTHO05D002739 1.7e-19 100.5 163 37.4
Migut.N00306 Erythranthe guttata HOM05D002652 ORTHO05D002739 2.2e-19 100.1 154 38.3
Sabra19G0038700 Salix brachista HOM05D002652 ORTHO05D002739 6.5e-19 98.6 163 36.2
Sabra19G0038800 Salix brachista HOM05D002652 ORTHO05D002739 6.5e-19 98.6 163 36.8
COL.COLO4_15900 Corchorus olitorius HOM05D002652 ORTHO05D002739 1.4e-18 97.4 152 37.5
TAR636G2313 Trochodendron aralioides HOM05D002652 ORTHO05D002739 1.4e-18 97.4 146 40.4
Potri.019G026860 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.9e-18 97.1 151 36.4
Potri.019G027200 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.9e-18 97.1 151 37.7
Sabra11G0121600 Salix brachista HOM05D002652 ORTHO05D002739 2.5e-18 96.7 150 38.0
Sabra19G0038900 Salix brachista HOM05D002652 ORTHO05D002739 4.2e-18 95.9 152 38.2
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 4.2e-18 95.9 145 37.9
Migut.G00568 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.2e-17 94.4 153 35.9
Sabra19G0039000 Salix brachista HOM05D002652 ORTHO05D002739 1.2e-17 94.4 153 35.9
CiPaw.08G106600 Carya illinoinensis HOM05D002652 ORTHO05D002739 1.6e-17 94.0 150 38.0
RhsimUnG0195300 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.1e-17 93.6 152 35.5
ECA247G3161 Erigeron canadensis HOM05D002652 ORTHO05D002739 2.7e-17 93.2 192 32.3
Potri.019G027000 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.7e-17 93.2 150 38.7
Sabra19G0038400 Salix brachista HOM05D002652 ORTHO05D002739 2.7e-17 93.2 152 34.2
Nn1g00661 Nelumbo nucifera HOM05D002652 ORTHO05D002739 3.6e-17 92.8 164 37.2
Rhsim02G0045100 Rhododendron simsii HOM05D002652 ORTHO05D002739 3.6e-17 92.8 148 37.2
Rhsim02G0046900 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.7e-17 92.4 150 35.3
CiPaw.08G106400 Carya illinoinensis HOM05D002652 ORTHO05D002739 1.4e-16 90.9 150 37.3
FAN17G3082 Fragaria x ananassa HOM05D002652 ORTHO05D002739 1.4e-16 90.9 183 33.3
FAN10G1323 Fragaria x ananassa HOM05D002652 ORTHO05D002739 1.8e-16 90.5 157 34.4
Nn1g00657 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.8e-16 90.5 162 34.6
FAN10G2095 Fragaria x ananassa HOM05D002652 ORTHO05D002739 2.3e-16 90.1 157 34.4
Ciclev10006564m.g Citrus clementina HOM05D002652 ORTHO05D002739 3.0e-16 89.7 153 35.3
FAN12G2993 Fragaria x ananassa HOM05D002652 ORTHO05D002739 3.9e-16 89.4 158 33.5
Potri.019G026740 Populus trichocarpa HOM05D002652 ORTHO05D002739 3.9e-16 89.4 159 34.6
Nn1g00658 Nelumbo nucifera HOM05D002652 ORTHO05D002739 5.1e-16 89.0 157 35.0
Sabra19G0035100 Salix brachista HOM05D002652 ORTHO05D002739 5.1e-16 89.0 151 32.5
Sabra19G0035500 Salix brachista HOM05D002652 ORTHO05D002739 5.1e-16 89.0 151 32.5
vmacro15483 Vaccinium macrocarpon HOM05D002652 ORTHO05D002739 5.1e-16 89.0 148 33.8
Nn1g00660 Nelumbo nucifera HOM05D002652 ORTHO05D002739 6.7e-16 88.6 155 34.8
Cfa014794 Carpinus fangiana HOM05D002652 ORTHO05D002739 8.8e-16 88.2 148 37.2
Ciclev10005927m.g Citrus clementina HOM05D002652 ORTHO05D002739 8.8e-16 88.2 153 34.6
Nn1g00655 Nelumbo nucifera HOM05D002652 ORTHO05D002739 8.8e-16 88.2 157 35.0
HanXRQChr07g0194071 Helianthus annuus HOM05D002652 ORTHO05D002739 2.0e-15 87.0 169 33.1
Potri.019G029000 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.0e-15 87.0 151 36.4
Ciclev10007025m.g Citrus clementina HOM05D002652 ORTHO05D002739 3.3e-15 86.3 146 34.9
RhsimUnG0058100 Rhododendron simsii HOM05D002652 ORTHO05D002739 3.3e-15 86.3 139 36.0
Rhsim02G0047400 Rhododendron simsii HOM05D002652 ORTHO05D002739 5.7e-15 85.5 148 35.8
vmacro15484 Vaccinium macrocarpon HOM05D002652 ORTHO05D002739 5.7e-15 85.5 151 37.1
QL06p021327 Quercus lobata HOM05D002652 ORTHO05D002739 1.3e-14 84.3 149 37.6
GSVIVG01027929001 Vitis vinifera HOM05D002652 ORTHO05D002739 1.3e-14 84.3 147 36.1
Aa31LG9G4210 Aethionema arabicum HOM05D002652 ORTHO05D002739 2.2e-14 83.6 151 33.8
FvH4_4g04740 Fragaria vesca HOM05D002652 ORTHO05D002739 2.2e-14 83.6 157 33.1
RcHm_v2.0_Chr4g0395461 Rosa chinensis HOM05D002652 ORTHO05D002739 2.2e-14 83.6 163 33.1
Duzib151G0998 Durio zibethinus HOM05D002652 ORTHO05D002739 2.8e-14 83.2 152 35.5
FAN12G4037 Fragaria x ananassa HOM05D002652 ORTHO05D002739 3.7e-14 82.8 151 35.1
TAR174G0001 Trochodendron aralioides HOM05D002652 ORTHO05D002739 3.7e-14 82.8 148 37.2
Potri.010G191400 Populus trichocarpa HOM05D002652 ORTHO05D002739 6.3e-14 82.0 161 33.5
Rhsim02G0046300 Rhododendron simsii HOM05D002652 ORTHO05D002739 6.3e-14 82.0 142 35.2
CiPaw.08G106800 Carya illinoinensis HOM05D002652 ORTHO05D002739 8.2e-14 81.6 151 32.5
Haze_11472 Corylus avellana HOM05D002652 ORTHO05D002739 8.2e-14 81.6 151 33.1
Rhsim02G0044400 Rhododendron simsii HOM05D002652 ORTHO05D002739 8.2e-14 81.6 152 34.2
Rhsim02G0046000 Rhododendron simsii HOM05D002652 ORTHO05D002739 8.2e-14 81.6 151 33.8
Rhsim02G0046500 Rhododendron simsii HOM05D002652 ORTHO05D002739 8.2e-14 81.6 152 34.2
Aa31LG9G4200 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.1e-13 81.3 148 32.4
Manes.15G046400 Manihot esculenta HOM05D002652 ORTHO05D002739 1.1e-13 81.3 161 31.7
Nn5g27876 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.8e-13 80.5 161 31.7
Potri.T121000 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.8e-13 80.5 161 31.1
RcHm_v2.0_Chr4g0397571 Rosa chinensis HOM05D002652 ORTHO05D002739 2.4e-13 80.1 157 33.8
SalBow3G3644 Salvia bowleyana HOM05D002652 ORTHO05D002739 2.4e-13 80.1 150 35.3
CARHR219080 Cardamine hirsuta HOM05D002652 ORTHO05D002739 3.1e-13 79.7 151 32.5
Duzib151G0030 Durio zibethinus HOM05D002652 ORTHO05D002739 4.1e-13 79.3 153 32.7
Oeu011206.1 Olea europaea HOM05D002652 ORTHO05D002739 4.1e-13 79.3 91 44.0
Oeu059391.1 Olea europaea HOM05D002652 ORTHO05D002739 4.1e-13 79.3 153 34.6
Thecc.04G266900 Theobroma cacao HOM05D002652 ORTHO05D002739 5.3e-13 79.0 150 34.0
TAR636G3443 Trochodendron aralioides HOM05D002652 ORTHO05D002739 5.3e-13 79.0 146 33.6
Aa31LG9G4240 Aethionema arabicum HOM05D002652 ORTHO05D002739 7.0e-13 78.6 179 30.2
RhsimUnG0058300 Rhododendron simsii HOM05D002652 ORTHO05D002739 7.0e-13 78.6 151 35.1
TAR365G0384 Trochodendron aralioides HOM05D002652 ORTHO05D002739 7.0e-13 78.6 147 34.7
Actinidia11376 Actinidia chinensis HOM05D002652 ORTHO05D002739 9.1e-13 78.2 211 32.2
CSS0002481 Camellia sinensis var. sinensis HOM05D002652 ORTHO05D002739 9.1e-13 78.2 172 32.0
Duzib151G0943 Durio zibethinus HOM05D002652 ORTHO05D002739 9.1e-13 78.2 152 35.5
RcHm_v2.0_Chr4g0395751 Rosa chinensis HOM05D002652 ORTHO05D002739 9.1e-13 78.2 151 32.5
Potri.T121200 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.2e-12 77.8 161 32.3
Potri.T121301 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.2e-12 77.8 161 32.3
Oeu020135.1 Olea europaea HOM05D002652 ORTHO05D002739 1.6e-12 77.4 156 34.0
Carub.0007s2911 Capsella rubella HOM05D002652 ORTHO05D002739 2.0e-12 77.0 149 32.9
Lsat_1_v5_gn_2_104120 Lactuca sativa HOM05D002652 ORTHO05D002739 2.0e-12 77.0 153 30.7
Migut.O00454 Erythranthe guttata HOM05D002652 ORTHO05D002739 2.6e-12 76.6 148 31.1
RhsimUnG0101000 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.6e-12 76.6 148 35.8
Cpa.g.sc59.9 Carica papaya HOM05D002652 ORTHO05D002739 3.5e-12 76.3 150 31.3
Migut.N00885 Erythranthe guttata HOM05D002652 ORTHO05D002739 4.5e-12 75.9 148 31.1
RcHm_v2.0_Chr4g0395571 Rosa chinensis HOM05D002652 ORTHO05D002739 4.5e-12 75.9 151 32.5
DCAR_002582 Daucus carota HOM05D002652 ORTHO05D002739 7.7e-12 75.1 151 30.5
Prupe.1G050000 Prunus persica HOM05D002652 ORTHO05D002739 7.7e-12 75.1 157 31.8
SalBow2G2144 Salvia bowleyana HOM05D000062 ORTHO05D000043 7.7e-12 75.1 154 35.1
FvH4_4g04760 Fragaria vesca HOM05D002652 ORTHO05D045822 1.3e-11 74.3 148 35.1
Manes.03G158000 Manihot esculenta HOM05D002652 ORTHO05D002739 1.3e-11 74.3 150 30.0
CANSAT11G2136 Cannabis sativa HOM05D002652 ORTHO05D002739 2.2e-11 73.6 155 32.9
Rhsim02G0044800 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.2e-11 73.6 148 35.1
THA.LOC104821630 Tarenaya hassleriana HOM05D002652 ORTHO05D002739 2.2e-11 73.6 197 28.9
Aa31LG9G4330 Aethionema arabicum HOM05D002652 ORTHO05D002739 2.9e-11 73.2 139 32.4
Dinv29797 Davidia involucrata HOM05D002652 ORTHO05D002739 3.8e-11 72.8 154 31.8
Prupe.1G049600 Prunus persica HOM05D002652 ORTHO05D002739 3.8e-11 72.8 152 33.6
Ciclev10007030m.g Citrus clementina HOM05D002652 ORTHO05D002739 5.0e-11 72.4 152 31.6
COL.COLO4_15908 Corchorus olitorius HOM05D002652 ORTHO05D002739 5.0e-11 72.4 148 33.8
Migut.H01091 Erythranthe guttata HOM05D002652 ORTHO05D002739 5.0e-11 72.4 99 40.4
ECA238G3361 Erigeron canadensis HOM05D000095 ORTHO05D002739 6.5e-11 72.0 166 30.7
Nn2g14922 Nelumbo nucifera HOM05D002652 ORTHO05D002739 6.5e-11 72.0 184 26.6
Nn1g08811 Nelumbo nucifera HOM05D002652 ORTHO05D002739 8.5e-11 71.6 164 31.7
TAR636G1048 Trochodendron aralioides HOM05D002652 ORTHO05D002739 8.5e-11 71.6 154 31.2
Aa31LG7G1800 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.1e-10 71.2 151 30.5
CSS0031417 Camellia sinensis var. sinensis HOM05D002652 ORTHO05D002739 1.1e-10 71.2 148 29.7
Cpa.g.sc8968.1 Carica papaya HOM05D002652 ORTHO05D002739 1.1e-10 71.2 147 29.9
DCAR_002581 Daucus carota HOM05D002652 ORTHO05D002739 1.5e-10 70.9 124 37.1
Hma1.2p1_0565F.1_g179480 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 1.5e-10 70.9 182 29.7
Aa31LG7G1660 Aethionema arabicum HOM05D002652 ORTHO05D002739 4.2e-10 69.3 150 32.7
FvH4_4g04990 Fragaria vesca HOM05D002652 ORTHO05D002739 4.2e-10 69.3 145 31.0
Aa31LG7G1790 Aethionema arabicum HOM05D002652 ORTHO05D002739 7.2e-10 68.6 138 31.2
Nn1g06038 Nelumbo nucifera HOM05D002652 ORTHO05D002739 7.2e-10 68.6 133 33.8
Hma1.2p1_0042F.1_g025730 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 9.4e-10 68.2 149 30.9
RcHm_v2.0_Chr4g0395551 Rosa chinensis HOM05D002652 ORTHO05D002739 1.2e-09 67.8 157 28.7
Atru.chr4.1903 Acer truncatum HOM05D002652 ORTHO05D002739 1.6e-09 67.4 149 31.5
Haze_25448 Corylus avellana HOM05D002652 ORTHO05D002739 1.6e-09 67.4 147 31.3
FAN17G1721 Fragaria x ananassa HOM05D002652 ORTHO05D002739 1.6e-09 67.4 181 28.2
Oeu011205.1 Olea europaea HOM05D002652 ORTHO05D002739 2.1e-09 67.0 151 30.5
Aa31LG9G4290 Aethionema arabicum HOM05D002652 ORTHO05D002739 2.7e-09 66.6 119 33.6
Migut.N00315 Erythranthe guttata HOM05D002652 ORTHO05D002739 2.7e-09 66.6 109 36.7
FvH4_4g04860 Fragaria vesca HOM05D002652 ORTHO05D002739 2.7e-09 66.6 151 31.8
FvH4_4g04850 Fragaria vesca HOM05D002652 ORTHO05D002739 3.6e-09 66.2 181 27.6
FAN12G2048 Fragaria x ananassa HOM05D002652 ORTHO05D002739 3.6e-09 66.2 181 27.6
Rhsim02G0046100 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.7e-09 65.9 198 29.8
Sabra19G0035300 Salix brachista HOM05D002652 ORTHO05D002739 4.7e-09 65.9 145 31.0
GSVIVG01027930001 Vitis vinifera HOM05D002652 ORTHO05D002739 6.1e-09 65.5 145 29.7
CiPaw.01G177100 Carya illinoinensis HOM05D002652 ORTHO05D002739 1.0e-08 64.7 183 29.5
Aa31LG7G1670 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.4e-08 64.3 124 32.3
Cfa021216 Carpinus fangiana HOM05D002652 ORTHO05D002739 2.3e-08 63.5 146 32.9
Prupe.1G049700 Prunus persica HOM05D002652 ORTHO05D002739 2.3e-08 63.5 155 30.3
Rhsim02G0045000 Rhododendron simsii HOM05D002652 ORTHO05D002739 3.0e-08 63.2 114 33.3
Actinidia39935 Actinidia chinensis HOM05D002652 ORTHO05D002739 6.7e-08 62.0 85 42.4
COL.COLO4_15987 Corchorus olitorius HOM05D002652 ORTHO05D002739 8.8e-08 61.6 160 29.4
MD05G1228500 Malus domestica HOM05D002652 ORTHO05D002739 8.8e-08 61.6 123 32.5
DCAR_030375 Daucus carota HOM05D002652 ORTHO05D002739 1.1e-07 61.2 122 33.6
Aa31LG7G1750 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.5e-07 60.8 109 32.1
AT4G13440 Arabidopsis thaliana HOM05D002652 ORTHO05D002739 1.5e-07 60.8 172 26.7
PGR044G1621 Punica granatum HOM05D002652 ORTHO05D002739 2.0e-07 60.5 125 33.6
FvH4_4g04900 Fragaria vesca HOM05D002652 ORTHO05D002739 2.6e-07 60.1 151 29.1
AL9U10120 Arabidopsis lyrata HOM05D002652 ORTHO05D002739 4.4e-07 59.3 150 27.3
Migut.N00313 Erythranthe guttata HOM05D002652 ORTHO05D002739 5.7e-07 58.9 156 28.8
CiPaw.02G106000 Carya illinoinensis HOM05D002652 ORTHO05D002739 7.5e-07 58.5 196 30.1
FAN12G0867 Fragaria x ananassa HOM05D004511 ORTHO05D005348 7.5e-07 58.5 157 27.4
Lsat_1_v5_gn_2_105441 Lactuca sativa HOM05D002652 ORTHO05D002739 7.5e-07 58.5 155 27.7
Oeu011211.1 Olea europaea HOM05D002652 ORTHO05D002739 9.7e-07 58.2 170 28.2
TAR636G2060 Trochodendron aralioides HOM05D002652 ORTHO05D002739 9.7e-07 58.2 151 31.1
FAN25G0267 Fragaria x ananassa HOM05D002652 ORTHO05D002739 3.7e-06 56.2 147 29.9
PGR044G1935 Punica granatum HOM05D002652 ORTHO05D002739 3.7e-06 56.2 83 36.1
RcHm_v2.0_Chr4g0395801 Rosa chinensis HOM05D002652 ORTHO05D002739 3.7e-06 56.2 153 28.8
Migut.G00567 Erythranthe guttata HOM05D002652 ORTHO05D002739 4.8e-06 55.8 153 27.5
PGR044G0093 Punica granatum HOM05D002652 ORTHO05D002739 4.8e-06 55.8 83 37.3
Rhsim09G0015400 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.8e-06 55.8 101 33.7


User provided reference genes

Program Settings