Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 6.3e-61 237.3 121 100.0
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.9e-49 199.1 120 80.8
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.6e-46 188.7 115 83.5
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 9.8e-46 186.8 121 78.5
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 2.2e-45 185.7 121 77.7
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.4e-44 183.0 116 78.4
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 3.1e-44 181.8 114 79.8
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 7.0e-44 180.6 115 80.9
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 9.1e-44 180.3 116 78.4
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 9.1e-44 180.3 115 75.7
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 9.1e-44 180.3 116 75.9
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.2e-43 179.9 118 76.3
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.2e-43 179.9 118 76.3
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.6e-43 179.5 116 75.9
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 1.6e-43 179.5 119 74.8
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 1.6e-43 179.5 119 74.8
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 2.0e-43 179.1 116 78.4
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 2.0e-43 179.1 116 78.4
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.7e-43 178.7 118 77.1
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 2.7e-43 178.7 116 75.0
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 2.7e-43 178.7 117 78.6
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 2.7e-43 178.7 116 77.6
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 7.7e-43 177.2 116 76.7
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 1.0e-42 176.8 114 75.4
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 1.3e-42 176.4 114 76.3
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.7e-42 176.0 116 74.1
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 2.2e-42 175.6 118 76.3
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 2.2e-42 175.6 115 76.5
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 2.9e-42 175.3 117 77.8
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.9e-42 175.3 116 76.7
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 3.8e-42 174.9 116 75.0
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 3.8e-42 174.9 116 73.3
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 8.5e-42 173.7 116 77.6
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 8.5e-42 173.7 119 73.9
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.5e-41 172.9 116 75.0
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.9e-41 172.6 116 73.3
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.5e-41 172.2 116 73.3
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 3.2e-41 171.8 114 75.4
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 3.2e-41 171.8 118 73.7
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 3.2e-41 171.8 116 75.0
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 3.2e-41 171.8 118 74.6
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 4.2e-41 171.4 124 74.2
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 5.5e-41 171.0 122 76.2
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 5.5e-41 171.0 120 74.2
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 5.5e-41 171.0 120 71.7
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 5.5e-41 171.0 115 76.5
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 9.5e-41 170.2 118 72.9
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 9.5e-41 170.2 119 71.4
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 9.5e-41 170.2 118 72.0
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.2e-40 169.9 121 71.1
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 1.2e-40 169.9 118 73.7
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 1.6e-40 169.5 120 72.5
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.6e-40 169.5 114 73.7
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 1.6e-40 169.5 121 71.1
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.1e-40 169.1 114 74.6
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 2.1e-40 169.1 120 72.5
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 2.1e-40 169.1 122 72.1
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 2.8e-40 168.7 121 69.4
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 2.8e-40 168.7 121 69.4
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 2.8e-40 168.7 114 76.3
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 2.8e-40 168.7 116 74.1
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.8e-40 168.7 121 71.1
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 3.6e-40 168.3 121 69.4
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 3.6e-40 168.3 121 69.4
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 3.6e-40 168.3 121 73.6
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 3.6e-40 168.3 123 74.8
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 3.6e-40 168.3 129 69.0
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 4.7e-40 167.9 120 73.3
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 4.7e-40 167.9 120 71.7
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 4.7e-40 167.9 118 76.3
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 6.1e-40 167.5 120 74.2
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 6.1e-40 167.5 117 74.4
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 8.0e-40 167.2 120 70.8
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 8.0e-40 167.2 119 73.1
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 8.0e-40 167.2 119 73.1
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 8.0e-40 167.2 119 72.3
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 8.0e-40 167.2 119 72.3
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 1.4e-39 166.4 116 72.4
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 1.8e-39 166.0 115 73.0
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 1.8e-39 166.0 117 72.6
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.8e-39 166.0 121 72.7
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 2.3e-39 165.6 119 73.9
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 2.3e-39 165.6 116 70.7
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.3e-39 165.6 119 72.3
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 4.0e-39 164.9 117 70.1
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 8.8e-39 163.7 116 73.3
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 8.8e-39 163.7 116 73.3
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 8.8e-39 163.7 115 73.9
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.2e-38 163.3 112 72.3
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 1.5e-38 162.9 118 72.0
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 1.5e-38 162.9 122 72.1
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 3.4e-38 161.8 118 69.5
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 4.4e-38 161.4 120 69.2
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 4.4e-38 161.4 120 69.2
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 4.4e-38 161.4 120 69.2
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 4.4e-38 161.4 119 73.1
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 5.7e-38 161.0 116 72.4
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 5.7e-38 161.0 112 71.4
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 5.7e-38 161.0 124 71.8
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 1.3e-37 159.8 129 65.1
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 1.7e-37 159.5 118 70.3
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 1.7e-37 159.5 129 66.7
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.7e-37 159.5 112 73.2
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 2.2e-37 159.1 90 86.7
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 2.8e-37 158.7 102 79.4
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 3.7e-37 158.3 93 82.8
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 6.3e-37 157.5 116 69.0
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 8.3e-37 157.1 118 68.6
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.4e-36 156.4 106 74.5
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 2.4e-36 155.6 94 83.0
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.4e-36 155.6 126 65.9
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 2.4e-36 155.6 118 67.8
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 3.1e-36 155.2 122 66.4
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 7.0e-36 154.1 124 67.7
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 7.0e-36 154.1 116 71.6
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 9.2e-36 153.7 116 71.6
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 1.2e-35 153.3 121 68.6
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 1.2e-35 153.3 118 66.9
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.6e-35 152.9 123 70.7
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.6e-35 152.9 119 68.9
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.6e-35 152.9 119 68.9
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 2.7e-35 152.1 107 75.7
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 4.5e-35 151.4 114 71.1
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.9e-35 151.0 128 66.4
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.7e-34 149.4 114 71.9
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.7e-34 149.4 111 72.1
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.3e-34 149.1 95 77.9
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 3.8e-34 148.3 117 67.5
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 8.6e-34 147.1 122 64.8
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 3.3e-33 145.2 91 80.2
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 3.3e-33 145.2 125 64.8
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 7.3e-33 144.1 124 65.3
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 1.4e-31 139.8 120 60.0
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 2.6e-30 135.6 114 66.7
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 2.6e-30 135.6 111 68.5
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 1.1e-28 130.2 83 77.1
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 3.2e-28 128.6 122 65.6
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 4.1e-28 128.3 117 61.5
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 5.9e-27 124.4 116 56.9
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.7e-24 114.8 81 67.9
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 8.0e-24 114.0 76 78.9
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 2.3e-23 112.5 104 61.5
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.2e-22 110.2 79 67.1
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 2.2e-21 105.9 110 58.2
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 5.4e-20 101.3 108 54.6
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 4.6e-19 98.2 93 55.9
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.7e-18 96.3 78 66.7
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.3e-17 91.7 79 58.2
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.6e-16 89.7 82 59.8
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 2.1e-16 89.4 107 47.7
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 3.6e-16 88.6 46 95.7
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.7e-16 88.2 72 63.9
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 4.4e-14 81.6 69 65.2
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 3.2e-12 75.5 67 55.2
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.4e-07 60.1 72 52.8


User provided reference genes

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