Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 0.0e+00 1435.6 725 100.0
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 0.0e+00 1153.3 718 79.9
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 0.0e+00 1146.3 717 80.8
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 0.0e+00 1146.0 726 79.9
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 0.0e+00 1144.8 745 79.6
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 0.0e+00 1121.3 716 79.2
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1080.5 724 74.3
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 0.0e+00 1080.5 718 76.5
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1078.9 724 74.7
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 4.5e-311 1070.8 725 74.8
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 1.6e-308 1062.4 728 73.1
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 5.1e-307 1057.4 698 76.4
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 3.3e-306 1054.7 699 76.0
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 4.7e-305 1050.8 698 74.5
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 1.4e-304 1049.3 728 72.1
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.8e-304 1048.9 753 71.3
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 5.2e-304 1047.3 728 71.6
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 6.9e-304 1047.0 716 73.7
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 2.6e-303 1045.0 722 73.4
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 7.6e-303 1043.5 727 72.4
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 2.2e-302 1042.0 721 74.1
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 7.1e-301 1036.9 745 72.1
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 4.3e-298 1027.7 724 71.1
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 4.3e-298 1027.7 799 66.5
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 4.0e-296 1021.1 689 75.5
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 4.5e-295 1017.7 699 72.4
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 7.6e-295 1016.9 698 72.6
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.7e-294 1015.8 727 70.8
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 8.4e-294 1013.4 698 72.5
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.4e-293 1011.9 722 71.5
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 2.4e-293 1011.9 720 71.4
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 3.2e-293 1011.5 724 70.3
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.1e-292 1008.8 723 71.2
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 7.9e-292 1006.9 722 69.3
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 1.1e-290 1003.0 722 71.1
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 5.6e-290 1000.7 717 70.0
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 7.4e-290 1000.3 724 69.3
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 3.7e-289 998.0 724 68.9
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 4.8e-289 997.7 711 70.3
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 6.2e-289 997.3 701 71.3
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 8.1e-289 996.9 725 69.0
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 4.0e-288 994.6 722 69.7
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 9.0e-288 993.4 721 69.8
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 2.0e-287 992.3 719 70.7
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 7.6e-287 990.3 723 70.4
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 1.3e-286 989.6 728 69.0
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 9.3e-285 983.4 723 69.2
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 3.5e-284 981.5 730 68.9
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 7.9e-284 980.3 728 68.4
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 3.0e-283 978.4 723 69.0
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 3.3e-282 974.9 726 69.4
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 4.3e-282 974.5 699 70.1
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 4.8e-281 971.1 719 69.4
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 4.8e-281 971.1 721 68.5
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.8e-280 969.1 723 68.7
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 3.1e-280 968.4 720 69.2
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 4.0e-280 968.0 721 68.2
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 5.3e-280 967.6 725 68.8
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 2.6e-279 965.3 697 71.2
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.0e-278 963.4 706 68.1
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.9e-278 961.8 682 72.3
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 2.5e-277 958.7 704 68.3
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 4.6e-276 954.5 699 67.8
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 4.6e-276 954.5 753 66.5
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 4.6e-276 954.5 754 65.8
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 7.9e-276 953.7 709 69.8
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 6.7e-275 950.7 713 67.9
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 1.5e-274 949.5 712 68.0
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 1.3e-273 946.4 712 66.6
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.8e-273 945.3 700 68.0
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 2.8e-273 945.3 700 67.6
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 3.7e-273 944.9 729 67.2
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.8e-272 942.6 730 67.0
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 7.6e-271 937.2 717 66.7
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.3e-270 936.4 722 65.8
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 2.2e-270 935.6 700 67.1
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 5.0e-270 934.5 698 67.5
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.4e-269 932.9 713 66.2
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 2.5e-269 932.2 712 66.4
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 5.5e-269 931.0 701 67.8
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 6.1e-268 927.5 729 64.7
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 7.4e-266 920.6 713 65.8
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 9.7e-266 920.2 683 68.7
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 4.8e-265 917.9 713 65.8
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 3.1e-264 915.2 716 64.8
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.3e-262 909.8 700 67.1
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 1.7e-262 909.4 632 72.5
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 2.2e-262 909.1 733 63.7
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 2.2e-262 909.1 735 63.8
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 3.8e-262 908.3 733 63.6
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 3.8e-262 908.3 678 69.0
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 8.5e-262 907.1 712 65.4
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 2.5e-261 905.6 733 63.6
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 1.6e-260 902.9 722 64.7
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 8.8e-259 897.1 737 63.6
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 1.5e-258 896.3 691 66.0
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 3.3e-258 895.2 709 64.7
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 2.4e-256 889.0 723 63.6
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 5.3e-256 887.9 655 69.9
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 5.3e-256 887.9 706 64.2
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 9.1e-256 887.1 693 65.7
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 1.3e-254 883.2 722 63.2
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.7e-254 882.9 727 63.5
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 2.9e-254 882.1 666 68.2
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.7e-249 865.1 700 62.6
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.1e-248 863.6 700 63.3
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 9.1e-248 860.5 738 61.9
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.5e-245 851.3 712 63.5
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 5.2e-243 844.7 714 61.6
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 7.0e-240 834.3 641 68.2
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 9.8e-234 813.9 734 60.1
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 8.3e-233 810.8 714 59.7
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 4.1e-232 808.5 738 60.0
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 4.5e-231 805.1 722 60.8
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.2e-228 797.0 643 66.3
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.4e-224 783.5 719 58.1
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 2.7e-223 779.2 573 69.5
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 1.2e-220 770.4 727 56.7
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.8e-220 769.2 546 72.2
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 5.2e-219 765.0 702 58.8
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.2e-218 763.8 567 69.0
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 7.0e-216 754.6 715 58.5
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 1.1e-211 740.7 727 56.7
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 3.4e-210 735.7 617 63.4
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.7e-209 732.3 560 67.9
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 7.1e-192 674.9 575 62.3
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.2e-191 674.1 705 53.2
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 1.1e-189 667.5 666 54.8
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 4.6e-183 645.6 489 67.5
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 2.2e-169 600.1 710 48.2
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.5e-149 534.3 580 51.9
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.5e-144 516.9 338 75.7
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 5.5e-144 515.8 896 38.5
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 6.7e-126 455.7 437 57.0
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.5e-114 416.8 257 79.8
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.9e-112 411.0 258 78.7
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.1e-96 358.6 498 42.4
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.4e-86 325.1 367 50.4
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 9.5e-80 302.4 327 51.7
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 5.1e-57 226.9 545 34.1
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.5e-53 215.3 284 45.4
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.3e-52 212.2 189 59.3
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.1e-46 192.6 142 68.3
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 1.0e-41 176.0 137 65.7
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 3.0e-41 174.5 131 66.4
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 6.1e-34 150.2 323 35.0
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 2.5e-32 144.8 128 58.6
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 2.8e-31 141.4 364 32.1
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.1e-30 139.4 174 45.4
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 1.4e-30 139.0 122 59.8
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 3.8e-28 131.0 177 44.6
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 1.3e-23 115.9 321 31.2
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 3.7e-23 114.4 121 52.1
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 2.0e-16 92.0 86 53.5
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 4.8e-15 87.4 85 52.9
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 7.0e-14 83.6 71 62.0
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.7e-13 80.1 46 73.9
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.7e-13 80.1 46 73.9
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 6.5e-12 77.0 58 60.3
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 4.2e-11 74.3 66 53.0
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.1e-10 72.0 49 65.3
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.3e-09 68.6 37 83.8
MCO01G401 Micromonas commoda HOM05D004359 ORTHO05D005052 4.1e-06 57.8 293 25.9


User provided reference genes

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