Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.8e-48 195.7 104 100.0
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 7.6e-31 137.1 88 84.1
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 3.8e-30 134.8 87 81.6
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 1.2e-28 129.8 87 79.3
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 1.6e-28 129.4 87 77.0
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 1.5e-26 122.9 87 77.0
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 1.9e-26 122.5 86 76.7
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 3.3e-26 121.7 86 75.6
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 2.1e-25 119.0 113 62.8
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 3.7e-25 118.2 86 73.3
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 3.7e-25 118.2 101 66.3
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.4e-24 116.3 86 72.1
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 4.1e-24 114.8 86 70.9
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 4.1e-24 114.8 74 79.7
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 1.2e-23 113.2 73 80.8
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 1.2e-23 113.2 87 71.3
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.5e-23 112.8 87 71.3
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 1.5e-23 112.8 87 71.3
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 3.4e-23 111.7 86 69.8
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 4.5e-23 111.3 87 71.3
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 1.3e-22 109.8 86 69.8
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 8.4e-22 107.1 101 63.4
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 1.4e-21 106.3 95 64.2
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 9.3e-21 103.6 103 58.3
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 1.6e-20 102.8 113 59.3
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 3.5e-20 101.7 91 63.7
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 6.1e-20 100.9 110 58.2
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 1.0e-19 100.1 114 53.5
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 2.3e-19 99.0 86 62.8
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 2.3e-19 99.0 103 56.3
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 2.3e-19 99.0 103 56.3
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 3.0e-19 98.6 134 48.5
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 6.7e-19 97.4 150 44.7
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 8.7e-19 97.1 104 56.7
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 1.1e-18 96.7 103 61.2
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 1.1e-18 96.7 83 62.7
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 1.1e-18 96.7 115 53.0
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 1.9e-18 95.9 87 64.4
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 5.7e-18 94.4 87 64.4
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 5.7e-18 94.4 114 52.6
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 7.4e-18 94.0 126 47.6
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 7.4e-18 94.0 83 67.5
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 1.3e-17 93.2 87 64.4
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 1.3e-17 93.2 86 65.1
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 1.3e-17 93.2 87 60.9
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.6e-17 92.8 86 62.8
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 1.6e-17 92.8 103 61.2
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 2.2e-17 92.4 127 47.2
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 3.7e-17 91.7 95 56.8
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 8.2e-17 90.5 86 59.3
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 8.2e-17 90.5 99 53.5
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 8.2e-17 90.5 87 55.2
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 1.1e-16 90.1 87 60.9
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.1e-16 90.1 87 60.9
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 1.1e-16 90.1 107 49.5
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 9.0e-16 87.0 81 63.0
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.2e-15 86.7 106 51.9
Zm00001eb380410 Zea mays HOM05D003821 ORTHO05D004449 1.2e-15 86.7 72 68.1
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 1.5e-15 86.3 103 52.4
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 5.9e-15 84.3 101 54.5
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 5.9e-15 84.3 90 57.8
Gohir.A10G164000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.9e-15 84.3 67 67.2
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.7e-14 82.8 87 56.3
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.2e-14 82.4 87 57.5
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.2e-14 82.4 87 57.5
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 2.9e-14 82.0 120 46.7
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 3.8e-14 81.6 88 54.5
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 3.8e-14 81.6 87 58.6
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 5.0e-14 81.3 103 52.4
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 6.5e-14 80.9 103 53.4
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 6.5e-14 80.9 87 57.5
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.5e-14 80.9 89 56.2
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 6.5e-14 80.9 86 54.7
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 1.9e-13 79.3 87 55.2
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 1.9e-13 79.3 86 52.3
Gorai.007G237400 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.9e-13 79.3 81 58.0
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.9e-13 79.3 83 56.6
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 2.5e-13 79.0 103 51.5
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 2.5e-13 79.0 86 54.7
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 3.2e-13 78.6 84 57.1
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 4.2e-13 78.2 87 54.0
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 4.2e-13 78.2 88 54.5
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 5.5e-13 77.8 123 43.9
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 7.2e-13 77.4 87 58.6
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 1.6e-12 76.3 78 59.0
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 1.6e-12 76.3 88 55.7
Rhsim04G0221500 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.6e-12 76.3 157 39.5
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 2.7e-12 75.5 83 56.6
Gohir.D11G223400 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.7e-12 75.5 60 66.7
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 2.7e-12 75.5 84 53.6
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 2.7e-12 75.5 87 52.9
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 2.7e-12 75.5 73 61.6
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 4.6e-12 74.7 88 55.7
DCAR_013986 Daucus carota HOM05D003821 ORTHO05D004449 4.6e-12 74.7 99 50.5
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 6.1e-12 74.3 83 57.8
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 1.0e-11 73.6 95 49.5
Mapoly0039s0070 Marchantia polymorpha HOM05D003821 ORTHO05D004449 1.0e-11 73.6 74 56.8
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 1.0e-11 73.6 87 55.2
Manes.05G064201 Manihot esculenta HOM05D003821 ORTHO05D004449 1.4e-11 73.2 61 70.5
CAN.G484.32 Capsicum annuum HOM05D003821 ORTHO05D004449 2.3e-11 72.4 134 45.5
A08p11990 Brassica napus HOM05D003821 ORTHO05D004449 3.9e-11 71.6 89 50.6
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 3.9e-11 71.6 87 50.6
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 6.7e-11 70.9 174 35.1
Ah.04g153550 Amaranthus hybridus HOM05D003821 ORTHO05D004449 2.0e-10 69.3 89 50.6
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 2.0e-10 69.3 42 83.3
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 2.5e-10 68.9 84 51.2
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 2.5e-10 68.9 41 85.4
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 5.7e-10 67.8 86 45.3
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 7.4e-10 67.4 47 76.6
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 9.7e-10 67.0 45 77.8
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.7e-09 66.2 87 48.3
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 1.7e-09 66.2 41 80.5
PSO832G3070 Papaver somniferum HOM05D003821 ORTHO05D004449 2.2e-09 65.9 63 55.6
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 2.2e-09 65.9 42 78.6
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 4.8e-09 64.7 41 78.0
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 4.8e-09 64.7 41 78.0
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 6.3e-09 64.3 117 41.9
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 6.3e-09 64.3 88 46.6
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 8.2e-09 63.9 82 50.0
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 1.1e-08 63.5 41 78.0
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 1.1e-08 63.5 79 49.4
Cre07.g329800 Chlamydomonas reinhardtii HOM05D003821 ORTHO05D004449 1.4e-08 63.2 60 53.3
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 1.4e-08 63.2 42 73.8
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 1.4e-08 63.2 85 47.1
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 1.8e-08 62.8 127 38.6
Hund20554 Selenicereus undatus HOM05D003821 ORTHO05D004449 1.8e-08 62.8 117 39.3
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.4e-08 62.4 51 64.7
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.4e-08 62.4 51 64.7
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.4e-08 62.4 51 64.7
RcHm_v2.0_Chr4g0422221 Rosa chinensis HOM05D003821 ORTHO05D004449 2.4e-08 62.4 43 74.4
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 2.4e-08 62.4 41 75.6
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 3.1e-08 62.0 86 46.5
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 3.1e-08 62.0 43 74.4
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 4.1e-08 61.6 41 75.6
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 5.3e-08 61.2 43 72.1
Zm00001eb098770 Zea mays HOM05D003821 ORTHO05D004449 5.3e-08 61.2 84 44.0
PSO210G2740 Papaver somniferum HOM05D003821 ORTHO05D004449 6.9e-08 60.8 63 52.4
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 6.9e-08 60.8 86 44.2
Glyma.03G213100 Glycine max HOM05D003821 ORTHO05D004449 9.1e-08 60.5 49 63.3
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 9.1e-08 60.5 40 77.5
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 9.1e-08 60.5 89 44.9
Pp3c16_4400 Physcomitrium patens HOM05D003821 ORTHO05D004449 1.2e-07 60.1 81 48.1
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 1.5e-07 59.7 34 85.3
Aa31LG10G6300 Aethionema arabicum HOM05D003821 ORTHO05D004449 2.0e-07 59.3 126 38.1
Hma1.2p1_0209F.1_g088610 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 2.0e-07 59.3 46 67.4
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 2.0e-07 59.3 86 46.5
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 2.6e-07 58.9 83 45.8
MBI02_g32313_MAGBIO Magnolia biondii HOM05D036700 ORTHO05D048553 4.5e-07 58.2 50 70.0
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 5.9e-07 57.8 41 70.7
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 5.9e-07 57.8 48 66.7
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 5.9e-07 57.8 88 45.5
SHI29056 Sapria himalayana HOM05D000030 ORTHO05D000009 5.9e-07 57.8 79 49.4
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 7.7e-07 57.4 87 44.8
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 7.7e-07 57.4 86 40.7
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.0e-06 57.0 42 76.2
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.0e-06 57.0 42 76.2
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.0e-06 57.0 42 76.2
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 1.0e-06 57.0 87 44.8
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.3e-06 56.6 41 75.6
PGR004G1635 Punica granatum HOM05D003821 ORTHO05D004449 1.3e-06 56.6 74 48.6
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 1.7e-06 56.2 87 46.0
Medtr7g108610 Medicago truncatula HOM05D003821 ORTHO05D004449 1.7e-06 56.2 46 65.2
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.2e-06 55.8 88 44.3
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.9e-06 55.5 86 41.9
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 2.9e-06 55.5 35 80.0
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 3.8e-06 55.1 175 30.3
Glyma.02G154700 Glycine max HOM05D003821 ORTHO05D004449 3.8e-06 55.1 87 43.7
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 3.8e-06 55.1 86 45.3
unitig_32.g10644 Utricularia gibba HOM05D003821 ORTHO05D004449 3.8e-06 55.1 36 75.0
Aa31LG8G3720 Aethionema arabicum HOM05D003821 ORTHO05D004449 6.5e-06 54.3 84 42.9
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 6.5e-06 54.3 76 43.4
Glyma.10G019600 Glycine max HOM05D003821 ORTHO05D004449 8.5e-06 53.9 87 42.5
Gorai.008G011000 Gossypium raimondii HOM05D003821 ORTHO05D004449 8.5e-06 53.9 87 43.7
HPP92_015490 Vanilla planifolia HOM05D003821 ORTHO05D004449 8.5e-06 53.9 82 47.6


User provided reference genes

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