Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 0.0e+00 1333.2 671 100.0
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 5.4e-303 1043.9 672 76.8
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 1.2e-281 973.0 671 72.7
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 9.2e-279 963.4 672 72.9
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 9.9e-257 890.2 676 66.3
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 3.4e-249 865.1 652 69.0
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 3.0e-245 852.0 660 65.5
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 6.2e-243 844.3 675 63.3
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 3.1e-242 842.0 676 62.7
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 2.0e-241 839.3 621 67.5
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 3.4e-241 838.6 657 64.8
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 1.7e-240 836.3 641 65.5
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 2.2e-240 835.9 664 64.0
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 2.9e-240 835.5 657 64.1
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 2.9e-240 835.5 673 62.7
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 3.2e-239 832.0 664 63.6
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 9.3e-239 830.5 661 62.9
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 2.2e-235 819.3 650 62.0
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 2.4e-234 815.8 653 63.6
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 9.0e-234 813.9 672 60.7
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 1.5e-233 813.1 666 62.0
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 7.6e-233 810.8 674 60.7
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 2.2e-232 809.3 666 61.6
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 2.2e-232 809.3 667 62.7
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 8.5e-232 807.4 672 59.5
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.9e-231 806.2 652 61.3
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 1.2e-230 803.5 657 61.0
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 7.9e-230 800.8 654 61.8
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 3.0e-229 798.9 672 61.3
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 2.8e-227 792.3 663 60.3
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 4.8e-227 791.6 664 59.5
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 3.1e-226 788.9 675 60.1
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 1.5e-225 786.6 666 61.1
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 2.6e-225 785.8 662 60.0
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 4.5e-225 785.0 662 60.3
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 4.5e-225 785.0 665 58.9
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.0e-224 783.9 663 60.5
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 3.8e-224 781.9 652 61.0
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 8.5e-224 780.8 663 60.0
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 8.5e-224 780.8 672 59.5
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 1.4e-223 780.0 715 59.0
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 3.6e-222 775.4 670 60.1
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 6.1e-222 774.6 647 60.4
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 2.3e-221 772.7 677 59.2
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 1.1e-220 770.4 659 59.2
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 1.5e-220 770.0 668 58.7
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 6.3e-219 764.6 698 56.0
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 3.1e-218 762.3 657 60.0
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 5.3e-218 761.5 678 58.8
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 9.1e-218 760.8 672 58.9
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 1.0e-216 757.3 671 59.5
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 2.9e-216 755.7 664 58.0
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 4.2e-215 751.9 667 57.4
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 4.2e-215 751.9 685 57.7
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 1.2e-214 750.4 665 57.3
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.6e-214 750.0 748 52.0
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 5.2e-213 745.0 703 55.9
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 5.7e-212 741.5 664 57.1
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 2.2e-211 739.6 659 57.8
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 3.7e-211 738.8 677 56.1
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 6.3e-211 738.0 666 57.7
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 7.0e-210 734.6 659 56.6
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 2.9e-208 729.2 668 55.8
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 4.4e-204 715.3 656 55.5
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 5.3e-202 708.4 684 53.2
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 7.7e-201 704.5 672 54.3
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 1.0e-200 704.1 674 53.4
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 2.9e-200 702.6 665 54.4
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 1.9e-199 699.9 509 68.0
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 2.1e-198 696.4 669 53.1
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.0e-197 694.1 670 53.4
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 1.8e-197 693.3 668 53.4
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 9.1e-194 681.0 667 52.8
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 5.9e-193 678.3 670 52.5
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 5.9e-193 678.3 670 52.5
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 7.7e-193 677.9 649 55.3
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 1.0e-192 677.6 527 65.3
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 1.7e-192 676.8 668 52.8
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 6.6e-192 674.9 668 52.7
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 3.3e-191 672.5 658 53.0
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 1.4e-189 667.2 666 52.7
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 1.8e-186 656.8 667 52.3
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 7.0e-186 654.8 472 69.7
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 7.8e-185 651.4 502 65.3
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 1.0e-184 651.0 641 53.0
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 3.3e-183 646.0 661 52.0
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 1.8e-181 640.2 658 54.0
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 2.6e-180 636.3 682 53.2
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 1.5e-172 610.5 667 49.8
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 3.4e-172 609.4 645 51.0
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 3.1e-165 586.3 670 47.6
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 5.2e-165 585.5 647 49.9
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.6e-161 573.9 540 57.8
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 4.7e-150 535.8 520 56.9
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 1.0e-128 464.9 394 59.9
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 3.9e-128 463.0 658 41.6
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 9.7e-119 431.8 646 38.9
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 4.3e-111 406.4 655 37.6
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 2.2e-99 367.5 397 52.6
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 1.1e-85 322.0 239 64.9
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 3.4e-71 273.9 465 36.8
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 2.0e-68 264.6 531 34.7
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 1.3e-67 261.9 615 33.2
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.6e-41 175.3 144 60.4
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 4.7e-41 173.7 230 41.3
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 3.1e-40 171.0 178 46.6
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 1.5e-34 152.1 99 74.7
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 2.5e-34 151.4 396 31.1
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 2.6e-31 141.4 87 77.0
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.7e-30 138.7 232 35.8
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 4.2e-29 134.0 92 65.2
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 9.0e-24 116.3 146 49.3
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 3.2e-21 107.8 111 55.9
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 4.9e-14 84.0 113 38.1
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 1.9e-13 82.0 68 58.8
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 3.2e-13 81.3 74 56.8
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 1.3e-11 75.9 83 47.0
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 1.8e-11 75.5 80 47.5
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 8.2e-09 66.6 64 51.6


User provided reference genes

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