Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 4.0e-245 850.9 403 100.0
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 4.2e-210 734.6 403 86.4
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 9.6e-207 723.4 409 84.1
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 6.5e-203 710.7 403 83.4
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 2.5e-202 708.8 403 82.9
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 2.3e-200 702.2 414 81.2
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 2.2e-198 695.7 403 82.6
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 5.3e-197 691.0 418 78.0
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 9.0e-197 690.3 403 80.6
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 4.5e-196 688.0 402 80.8
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 7.7e-196 687.2 402 81.1
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 7.7e-196 687.2 401 79.8
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 2.2e-195 685.6 401 81.5
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 7.2e-194 680.6 391 82.6
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 7.2e-194 680.6 414 79.2
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 9.4e-194 680.2 403 79.9
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 2.1e-193 679.1 402 80.3
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 4.6e-193 677.9 402 79.9
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 7.9e-193 677.2 403 79.7
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 1.0e-192 676.8 403 79.7
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 1.4e-192 676.4 403 79.9
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 5.1e-192 674.5 404 79.5
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 5.1e-192 674.5 403 79.4
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 6.7e-192 674.1 403 79.9
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 8.8e-192 673.7 399 80.2
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 8.8e-192 673.7 404 79.5
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 5.7e-191 671.0 404 79.5
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 5.7e-191 671.0 404 79.2
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 5.7e-191 671.0 402 80.3
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 7.4e-191 670.6 404 79.0
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 9.7e-191 670.2 403 79.4
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 1.3e-190 669.8 404 79.7
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 1.3e-190 669.8 404 79.0
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 2.2e-190 669.1 390 79.7
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 2.8e-190 668.7 401 79.8
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 2.8e-190 668.7 410 77.6
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 2.8e-190 668.7 391 81.8
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 3.7e-190 668.3 402 78.1
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 4.8e-190 667.9 403 79.4
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 6.3e-190 667.5 389 80.2
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 8.2e-190 667.2 405 79.0
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 1.4e-189 666.4 404 79.0
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.4e-189 666.4 403 78.7
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 1.4e-189 666.4 402 78.6
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 1.4e-189 666.4 396 79.5
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 2.4e-189 665.6 403 78.4
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 2.4e-189 665.6 403 78.4
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 2.4e-189 665.6 404 79.2
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 2.4e-189 665.6 403 77.9
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 9.1e-189 663.7 403 77.9
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 9.1e-189 663.7 403 77.9
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 1.5e-188 662.9 402 77.9
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 1.5e-188 662.9 409 78.2
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 4.5e-188 661.4 397 78.8
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 1.0e-187 660.2 395 78.5
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 1.3e-187 659.8 403 77.7
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 1.7e-187 659.4 402 77.6
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 6.5e-187 657.5 402 77.1
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 6.5e-187 657.5 402 77.4
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 8.5e-187 657.1 403 78.2
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 2.5e-186 655.6 403 77.2
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 3.2e-186 655.2 402 78.6
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 4.2e-186 654.8 403 77.4
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 9.4e-186 653.7 433 73.9
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 9.4e-186 653.7 403 77.7
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 1.2e-185 653.3 391 78.0
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 2.7e-185 652.1 402 78.4
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 6.1e-185 651.0 403 75.2
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 1.0e-184 650.2 403 75.2
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 3.0e-184 648.7 402 77.9
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 6.7e-184 647.5 433 72.7
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 1.1e-183 646.7 403 75.7
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 1.5e-183 646.4 403 76.2
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 2.6e-183 645.6 403 74.7
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 3.3e-183 645.2 403 75.2
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 4.4e-183 644.8 391 79.0
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 3.7e-182 641.7 400 75.8
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 4.1e-181 638.3 403 74.7
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 4.1e-181 638.3 403 74.4
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 4.1e-181 638.3 386 78.8
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 1.0e-179 633.6 401 74.8
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 6.5e-179 630.9 413 73.8
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.5e-178 629.8 403 75.4
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 1.2e-177 626.7 407 74.0
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 6.1e-177 624.4 387 75.2
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 6.1e-177 624.4 387 75.2
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 6.1e-177 624.4 420 73.3
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 1.0e-176 623.6 403 72.7
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 1.4e-176 623.2 401 75.6
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 7.5e-175 617.5 389 74.6
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 4.8e-174 614.8 397 74.6
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.9e-170 602.8 387 74.9
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 1.9e-170 602.8 402 72.4
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 3.2e-170 602.1 410 70.5
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 9.4e-170 600.5 357 78.4
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 1.8e-168 596.3 365 77.5
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 1.3e-166 590.1 388 71.6
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 1.7e-166 589.7 388 71.6
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 2.2e-166 589.3 380 74.5
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 1.1e-165 587.0 400 71.0
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 2.4e-165 585.9 388 71.1
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 9.1e-165 583.9 376 72.6
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 1.7e-163 579.7 411 70.6
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 1.8e-160 569.7 403 70.5
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 4.0e-160 568.5 340 78.2
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 1.5e-159 566.6 405 69.9
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 1.2e-153 547.0 396 65.2
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 2.1e-153 546.2 398 66.1
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 1.0e-152 543.9 357 71.7
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 1.2e-151 540.4 339 75.2
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 2.0e-151 539.7 396 64.6
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 8.3e-150 534.3 399 63.2
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 7.8e-148 527.7 305 81.3
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 5.0e-147 525.0 306 81.0
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 2.1e-145 519.6 396 64.6
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 7.5e-143 511.1 346 70.8
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.3e-139 500.4 401 60.6
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.9e-138 496.5 306 77.5
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 7.3e-138 494.6 394 60.4
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 6.4e-110 401.7 240 80.0
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 2.3e-99 366.7 205 83.9
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 7.1e-93 345.1 266 59.8
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 2.9e-86 323.2 187 80.7
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 5.9e-79 298.9 372 49.2
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 4.4e-74 282.7 218 66.5
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 7.4e-74 282.0 433 38.1
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 6.3e-73 278.9 159 79.9
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.4e-72 277.7 171 76.0
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 2.4e-72 276.9 225 58.2
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.6e-60 237.7 146 75.3
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 1.5e-58 231.1 145 75.2
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 8.2e-57 225.3 172 62.2
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 1.0e-38 165.2 190 50.0
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 3.4e-26 123.6 72 80.6
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 1.9e-13 81.3 202 34.2
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 3.3e-13 80.5 263 27.0
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 2.3e-06 57.8 103 40.8


User provided reference genes

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