Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3810 Avicennia marina HOM05D006985 ORTHO05D008749 5.0e-76 287.7 149 100.0
MSTRG.23313 Avicennia marina HOM05D006985 ORTHO05D008749 1.6e-53 213.0 148 72.3
SalBow6G7167 Salvia bowleyana HOM05D006985 ORTHO05D008749 1.2e-50 203.4 146 68.5
TWI53G2009 Tripterygium wilfordii HOM05D006985 ORTHO05D008749 1.4e-49 199.9 149 67.8
Migut.H02428 Erythranthe guttata HOM05D006985 ORTHO05D008749 1.8e-49 199.5 149 65.8
SGA_v2.0_scaffold51G18747 Striga asiatica HOM05D006985 ORTHO05D008749 3.1e-49 198.7 142 67.6
GSVIVG01022222001 Vitis vinifera HOM05D006985 ORTHO05D008749 2.0e-48 196.1 144 68.8
TAR625G1052 Trochodendron aralioides HOM05D006985 ORTHO05D008749 2.9e-47 192.2 142 69.0
Thecc.01G112400 Theobroma cacao HOM05D006985 ORTHO05D008749 3.7e-47 191.8 147 65.3
Manes.12G142400 Manihot esculenta HOM05D006985 ORTHO05D008749 6.4e-47 191.0 142 66.9
Cc07_g16120 Coffea canephora HOM05D006985 ORTHO05D008749 1.9e-46 189.5 148 64.9
Potri.005G084200 Populus trichocarpa HOM05D006985 ORTHO05D008749 2.4e-46 189.1 155 63.9
Duzib147G0418 Durio zibethinus HOM05D006985 ORTHO05D008749 3.2e-46 188.7 147 65.3
Nn5g28916 Nelumbo nucifera HOM05D006985 ORTHO05D008749 9.2e-46 187.2 144 66.0
Gohir.A02G134801 Gossypium hirsutum HOM05D006985 ORTHO05D008749 1.2e-45 186.8 149 63.1
Peaxi162Scf00323g00052 Petunia axillaris HOM05D006985 ORTHO05D008749 1.6e-45 186.4 148 66.2
Lj2A564T40 Lonicera japonica HOM05D006985 ORTHO05D008749 2.7e-45 185.7 141 66.7
Glyma.05G183500 Glycine max HOM05D006985 ORTHO05D008749 3.5e-45 185.3 151 63.6
Gohir.D03G045800 Gossypium hirsutum HOM05D006985 ORTHO05D008749 3.5e-45 185.3 147 63.3
Gorai.003G047000 Gossypium raimondii HOM05D006985 ORTHO05D008749 3.5e-45 185.3 147 63.3
Lsat_1_v5_gn_2_67381 Lactuca sativa HOM05D006985 ORTHO05D008749 3.5e-45 185.3 152 61.8
Sabra05G0069300 Salix brachista HOM05D006985 ORTHO05D008749 3.5e-45 185.3 154 62.3
HanXRQChr14g0446291 Helianthus annuus HOM05D006985 ORTHO05D008749 4.6e-45 184.9 149 61.1
PGSC0003DMG400016590 Solanum tuberosum HOM05D006985 ORTHO05D008749 4.6e-45 184.9 147 65.3
CAN.G276.1 Capsicum annuum HOM05D006985 ORTHO05D008749 6.0e-45 184.5 149 65.1
Oeu028373.1 Olea europaea HOM05D006985 ORTHO05D008749 1.0e-44 183.7 147 65.3
VMungo0251G1437 Vigna mungo HOM05D006985 ORTHO05D008749 1.0e-44 183.7 147 63.9
Atru.chr4.358 Acer truncatum HOM05D006985 ORTHO05D008749 1.3e-44 183.3 147 64.6
Glyma.08G141300 Glycine max HOM05D006985 ORTHO05D008749 1.3e-44 183.3 151 64.2
COL.COLO4_11016 Corchorus olitorius HOM05D006985 ORTHO05D008749 1.7e-44 183.0 148 62.2
Nitab4.5_0000471g0030 Nicotiana tabacum HOM05D006985 ORTHO05D008749 2.3e-44 182.6 150 63.3
Hma1.2p1_0375F.1_g138690 Hydrangea macrophylla HOM05D006985 ORTHO05D008749 3.0e-44 182.2 146 65.8
Oeu030683.1 Olea europaea HOM05D006985 ORTHO05D008749 3.0e-44 182.2 149 64.4
MELO3C007486.2 Cucumis melo HOM05D006985 ORTHO05D008749 8.6e-44 180.6 155 63.2
QL06p032211 Quercus lobata HOM05D006985 ORTHO05D008749 8.6e-44 180.6 152 63.8
Ciclev10026526m.g Citrus clementina HOM05D006985 ORTHO05D008749 1.1e-43 180.3 141 66.7
Phvul.002G264600 Phaseolus vulgaris HOM05D006985 ORTHO05D008749 1.5e-43 179.9 144 63.9
Sopen04g023520 Solanum pennellii HOM05D006985 ORTHO05D008749 2.5e-43 179.1 147 63.9
Aa31LG7G14690 Aethionema arabicum HOM05D006985 ORTHO05D008749 3.3e-43 178.7 150 59.3
CSS0005033 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 3.3e-43 178.7 143 62.9
ECA238G4202 Erigeron canadensis HOM05D006985 ORTHO05D008749 3.3e-43 178.7 151 60.9
ClCG01G016160 Citrullus lanatus HOM05D006985 ORTHO05D008749 5.6e-43 177.9 150 63.3
Actinidia28892 Actinidia chinensis HOM05D006985 ORTHO05D008749 7.3e-43 177.6 150 59.3
CSS0027796 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 7.3e-43 177.6 143 62.2
Solyc04g053130.4 Solanum lycopersicum HOM05D006985 ORTHO05D008749 9.5e-43 177.2 147 63.3
Duzib187G0142 Durio zibethinus HOM05D006985 ORTHO05D008749 1.2e-42 176.8 150 61.3
CsaV3_6G042430 Cucumis sativus L. HOM05D006985 ORTHO05D008749 1.6e-42 176.4 155 61.3
Eucgr.I00326 Eucalyptus grandis HOM05D006985 ORTHO05D008749 1.6e-42 176.4 151 60.3
Lalb_Chr13g0296201 Lupinus albus HOM05D006985 ORTHO05D008749 2.8e-42 175.6 151 57.6
arahy.Tifrunner.gnm1.ann1.7DG6XK Arachis hypogaea HOM05D006985 ORTHO05D008749 3.6e-42 175.3 148 60.8
arahy.Tifrunner.gnm1.ann1.MHK3H7 Arachis hypogaea HOM05D006985 ORTHO05D008749 3.6e-42 175.3 148 60.8
CiPaw.04G092100 Carya illinoinensis HOM05D006985 ORTHO05D008749 3.6e-42 175.3 146 59.6
Dinv42695 Davidia involucrata HOM05D006985 ORTHO05D008749 3.6e-42 175.3 148 63.5
Thhalv10000325m.g Eutrema salsugineum HOM05D006985 ORTHO05D008749 3.6e-42 175.3 160 55.6
CANSAT01G0007 Cannabis sativa HOM05D006985 ORTHO05D008749 4.7e-42 174.9 151 57.6
BcaB08g35014 Brassica carinata HOM05D006985 ORTHO05D008749 6.2e-42 174.5 156 57.7
A09p57880 Brassica napus HOM05D006985 ORTHO05D008749 6.2e-42 174.5 153 58.2
C08p41110 Brassica napus HOM05D006985 ORTHO05D008749 6.2e-42 174.5 153 58.2
BolC8t51677H Brassica oleracea HOM05D006985 ORTHO05D008749 6.2e-42 174.5 153 58.2
BraA09t41180Z Brassica rapa HOM05D006985 ORTHO05D008749 6.2e-42 174.5 153 58.2
Sp4g01050 Schrenkiella parvula HOM05D006985 ORTHO05D008749 6.2e-42 174.5 155 58.7
Cpa.g.sc196.10 Carica papaya HOM05D006985 ORTHO05D008749 8.1e-42 174.1 150 60.7
DCAR_010078 Daucus carota HOM05D006985 ORTHO05D008749 1.1e-41 173.7 153 62.1
PGR004G1495 Punica granatum HOM05D006985 ORTHO05D008749 1.1e-41 173.7 147 59.9
THA.LOC104804144 Tarenaya hassleriana HOM05D006985 ORTHO05D008749 1.4e-41 173.3 155 55.5
Sed0020932 Sechium edule HOM05D006985 ORTHO05D008749 1.8e-41 172.9 146 63.7
AL4G11290 Arabidopsis lyrata HOM05D006985 ORTHO05D008749 2.3e-41 172.6 156 57.7
BcaC07g41109 Brassica carinata HOM05D006985 ORTHO05D008749 2.3e-41 172.6 155 58.1
Rhsim10G0013600 Rhododendron simsii HOM05D006985 ORTHO05D008749 3.1e-41 172.2 149 61.7
Ca_17697_v3 Cicer arietinum L. HOM05D006985 ORTHO05D008749 5.2e-41 171.4 151 59.6
Haze_25036 Corylus avellana HOM05D006985 ORTHO05D008749 6.8e-41 171.0 150 57.3
MBI02_g45734_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 6.8e-41 171.0 148 58.1
MBI02_g20708_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 8.9e-41 170.6 148 58.1
Rhsim08G0006600 Rhododendron simsii HOM05D006985 ORTHO05D008749 8.9e-41 170.6 149 61.7
Rhsim08G0007300 Rhododendron simsii HOM05D006985 ORTHO05D008749 8.9e-41 170.6 149 61.7
AT2G21970 Arabidopsis thaliana HOM05D006985 ORTHO05D008749 1.2e-40 170.2 153 55.6
MD15G1333400 Malus domestica HOM05D006985 ORTHO05D008749 1.5e-40 169.9 146 59.6
Aqoxy5G01954 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 2.0e-40 169.5 149 57.0
Cfa002750 Carpinus fangiana HOM05D006985 ORTHO05D008749 2.0e-40 169.5 150 56.0
Hund03540 Selenicereus undatus HOM05D006985 ORTHO05D008749 2.0e-40 169.5 160 55.0
Carub.0004s0111 Capsella rubella HOM05D006985 ORTHO05D008749 5.8e-40 167.9 155 56.1
Prupe.6G173300 Prunus persica HOM05D006985 ORTHO05D008749 7.5e-40 167.5 147 57.1
Ah.03g141710 Amaranthus hybridus HOM05D006985 ORTHO05D008749 9.9e-40 167.2 168 53.0
Lj4g0016816 Lotus japonicus HOM05D006985 ORTHO05D008749 1.3e-39 166.8 148 58.8
Aqoxy7G01607 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 2.2e-39 166.0 149 56.4
Psat7g051440 Pisum sativum HOM05D006985 ORTHO05D008749 2.4e-38 162.5 147 59.9
Sc16g0004160 Simmondsia chinensis HOM05D006985 ORTHO05D008749 3.2e-38 162.2 144 57.6
AUR62016276 Chenopodium quinoa HOM05D006985 ORTHO05D008749 9.2e-38 160.6 163 53.4
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 2.1e-37 159.5 132 65.2
vmacro18630 Vaccinium macrocarpon HOM05D006985 ORTHO05D008749 2.1e-37 159.5 155 55.5
EL10Ac6g14751 Beta vulgaris HOM05D006985 ORTHO05D008749 2.7e-37 159.1 159 52.2
AUR62003309 Chenopodium quinoa HOM05D006985 ORTHO05D008749 4.6e-37 158.3 163 51.5
RcHm_v2.0_Chr2g0116361 Rosa chinensis HOM05D006985 ORTHO05D008749 1.3e-36 156.8 147 55.8
HPP92_013077 Vanilla planifolia HOM05D006985 ORTHO05D008749 2.3e-36 156.0 144 53.5
FvH4_1g22220 Fragaria vesca HOM05D006985 ORTHO05D008749 3.9e-36 155.2 150 54.7
FAN23G1894 Fragaria x ananassa HOM05D006985 ORTHO05D008749 3.9e-36 155.2 150 54.7
CDE02G4368 Ceratophyllum demersum HOM05D006985 ORTHO05D008749 1.1e-35 153.7 142 52.1
PSO210G1005 Papaver somniferum HOM05D006985 ORTHO05D008749 6.8e-33 144.4 160 45.0
ATR0564G194 Amborella trichopoda HOM05D006985 ORTHO05D008749 7.6e-32 141.0 145 50.3
Os04g0639200 Oryza sativa ssp. japonica HOM05D006985 ORTHO05D008749 9.9e-32 140.6 148 48.6
Zm00001eb431840 Zea mays HOM05D006985 ORTHO05D008749 2.9e-31 139.0 149 49.0
SEGI_00004 Sequoiadendron giganteum HOM05D006985 ORTHO05D008749 1.7e-28 129.8 147 45.6
PSO170G0586 Papaver somniferum HOM05D006985 ORTHO05D008749 8.4e-23 110.9 124 48.4
Hund19658 Selenicereus undatus HOM05D006985 ORTHO05D008749 2.1e-21 106.3 115 49.6
AagrBONN_evm.TU.Sc2ySwM_362.2621 Anthoceros agrestis HOM05D006985 ORTHO05D008749 1.0e-20 104.0 138 39.9
CARHR113060 Cardamine hirsuta HOM05D006985 ORTHO05D008749 1.7e-20 103.2 82 59.8
SMO174G0105 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 5.3e-17 91.7 141 31.9
unitig_88.g27736 Utricularia gibba HOM05D006985 ORTHO05D008749 2.0e-16 89.7 65 66.2
Mapoly0007s0046 Marchantia polymorpha HOM05D006985 ORTHO05D008749 9.9e-16 87.4 139 37.4
SMO356G0636 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 1.7e-15 86.7 139 31.7
CARHR113050 Cardamine hirsuta HOM05D006985 ORTHO05D008749 1.6e-13 80.1 76 53.9
Pp3c27_3810 Physcomitrium patens HOM05D006985 ORTHO05D008749 6.0e-13 78.2 136 34.6
Pp3c16_13700 Physcomitrium patens HOM05D006985 ORTHO05D008749 7.9e-13 77.8 136 35.3
CBR_g770 Chara braunii HOM05D006985 ORTHO05D008749 3.0e-12 75.9 139 33.1
CDE08G1171 Ceratophyllum demersum HOM05D000290 ORTHO05D009072 6.2e-10 68.2 65 49.2
FAN26G1540 Fragaria x ananassa HOM05D000436 ORTHO05D000678 3.1e-09 65.9 69 49.3


User provided reference genes

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