Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 2.5e-189 665.6 420 100.0
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 1.7e-105 387.1 414 60.1
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 3.6e-103 379.4 365 65.8
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 8.8e-102 374.8 359 63.8
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.4e-99 366.7 426 56.1
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 3.1e-99 366.3 376 63.3
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.6e-98 363.2 324 69.8
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 2.6e-98 363.2 421 53.9
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 7.7e-98 361.7 461 54.2
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.0e-97 361.3 276 69.9
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 1.0e-97 361.3 357 61.6
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 5.0e-97 359.0 276 69.9
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.1e-96 357.8 393 57.8
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.9e-96 357.1 276 69.2
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 1.9e-96 357.1 276 69.2
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 2.7e-95 353.2 390 59.2
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 2.7e-95 353.2 379 56.7
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 2.3e-94 350.1 254 71.7
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 6.7e-94 348.6 382 56.5
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 6.7e-94 348.6 386 56.5
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 6.7e-94 348.6 378 58.7
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.1e-93 347.8 462 51.3
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.5e-93 347.4 396 56.6
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 4.4e-93 345.9 368 56.5
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 7.4e-93 345.1 330 60.9
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.8e-92 343.2 345 58.3
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 3.7e-92 342.8 330 60.6
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 4.8e-92 342.4 361 59.3
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 6.3e-92 342.0 238 75.2
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 6.3e-92 342.0 259 71.0
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 8.2e-92 341.7 271 69.0
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 8.2e-92 341.7 251 72.1
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 1.1e-91 341.3 461 49.7
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.4e-91 340.1 381 59.3
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.4e-91 340.1 374 59.6
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 2.4e-91 340.1 391 55.0
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.4e-91 340.1 306 61.8
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 2.4e-91 340.1 246 72.8
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 3.1e-91 339.7 397 54.7
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 4.1e-91 339.3 351 58.7
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 5.3e-91 339.0 369 59.3
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 5.3e-91 339.0 395 52.7
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 7.0e-91 338.6 254 72.4
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.2e-90 337.8 465 50.5
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 1.2e-90 337.8 264 70.1
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 2.6e-90 336.7 260 69.2
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 2.6e-90 336.7 371 59.0
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 2.6e-90 336.7 386 55.4
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 3.5e-90 336.3 244 73.8
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 5.9e-90 335.5 382 58.1
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 7.7e-90 335.1 391 56.5
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 1.3e-89 334.3 365 55.6
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 2.2e-89 333.6 246 70.7
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 2.2e-89 333.6 458 50.4
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.2e-89 333.6 421 50.8
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 2.9e-89 333.2 368 56.5
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 3.8e-89 332.8 481 48.9
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 5.0e-89 332.4 256 68.4
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 5.0e-89 332.4 391 53.5
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 6.5e-89 332.0 387 56.8
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 8.5e-89 331.6 387 56.6
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 1.1e-88 331.3 329 60.5
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 1.5e-88 330.9 409 51.3
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 1.5e-88 330.9 246 69.5
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 2.5e-88 330.1 382 53.1
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 4.2e-88 329.3 358 59.8
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 7.2e-88 328.6 423 51.1
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 9.4e-88 328.2 376 54.0
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 1.2e-87 327.8 372 54.8
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.2e-87 327.8 367 56.1
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 2.7e-87 326.6 384 54.2
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 2.7e-87 326.6 248 68.5
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.7e-87 326.6 379 57.8
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 2.7e-87 326.6 357 57.4
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 4.7e-87 325.9 367 57.2
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 6.1e-87 325.5 323 59.1
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 8.0e-87 325.1 300 61.7
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 1.0e-86 324.7 332 60.2
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 3.0e-86 323.2 257 66.9
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 3.0e-86 323.2 363 55.9
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 4.0e-86 322.8 379 56.7
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 5.2e-86 322.4 367 54.2
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 5.2e-86 322.4 374 57.0
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 8.8e-86 321.6 387 51.7
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 1.5e-85 320.9 387 55.0
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.5e-85 320.9 407 53.6
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.5e-85 320.9 433 52.9
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.6e-85 320.1 353 56.1
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 2.6e-85 320.1 372 56.2
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 3.3e-85 319.7 360 55.6
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 4.4e-85 319.3 323 56.7
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 4.4e-85 319.3 353 56.1
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 5.7e-85 318.9 247 67.6
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 5.7e-85 318.9 247 67.6
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 5.7e-85 318.9 344 56.7
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 1.7e-84 317.4 363 55.6
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 6.3e-84 315.5 431 52.7
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.1e-83 314.7 350 55.4
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.1e-83 314.7 365 57.3
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 3.1e-83 313.2 377 55.2
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 4.1e-83 312.8 244 69.3
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 3.5e-82 309.7 327 55.4
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 4.5e-82 309.3 213 77.9
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 5.9e-82 308.9 245 64.9
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.0e-81 308.1 401 49.4
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 3.8e-81 306.2 380 52.1
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 6.5e-81 305.4 250 64.4
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 4.2e-80 302.8 319 58.6
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 4.2e-80 302.8 351 51.0
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 1.2e-79 301.2 227 67.0
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 2.7e-79 300.1 230 67.0
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 8.0e-79 298.5 331 53.2
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 7.5e-77 292.0 231 64.9
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 2.4e-75 287.0 370 48.4
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 5.0e-73 279.3 351 51.6
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 7.2e-72 275.4 360 50.3
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 8.0e-71 271.9 327 51.1
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 1.0e-62 245.0 338 45.6
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 1.6e-55 221.1 270 47.8
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 8.3e-44 182.2 287 39.7
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 9.2e-43 178.7 392 35.5
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 2.1e-42 177.6 239 39.3
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 1.7e-41 174.5 251 37.5
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 9.5e-40 168.7 112 78.6
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.4e-38 164.9 340 38.8
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 1.1e-35 155.2 245 37.6
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 2.1e-34 151.0 227 40.1
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 7.8e-34 149.1 121 61.2
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 1.1e-30 138.7 247 35.2
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.5e-29 134.8 215 36.7
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.5e-29 134.8 213 34.7
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 3.8e-28 130.2 89 69.7
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 1.4e-27 128.3 271 43.9
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 9.3e-27 125.6 222 36.0
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 2.5e-24 117.5 238 31.5
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 7.3e-24 115.9 239 31.4
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 6.9e-22 109.4 215 33.5
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 7.6e-21 105.9 148 41.2
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 1.1e-16 92.0 222 36.5
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 5.6e-16 89.7 238 30.7
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 8.4e-12 75.9 219 30.6
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 2.5e-11 74.3 69 50.7
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 1.6e-10 71.6 265 26.0
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 4.6e-10 70.1 108 40.7
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 1.8e-09 68.2 100 41.0
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 2.3e-09 67.8 43 62.8
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 3.9e-09 67.0 100 37.0
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 2.5e-08 64.3 160 34.4
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 5.6e-08 63.2 134 33.6
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 7.4e-08 62.8 184 31.5
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 9.6e-08 62.4 63 41.3


User provided reference genes

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