Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 6.6e-199 697.2 358 100.0
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 1.6e-136 490.0 352 73.9
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 3.0e-135 485.7 352 73.0
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 2.5e-134 482.6 356 70.8
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 5.2e-119 431.8 338 68.0
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 2.2e-117 426.4 327 67.6
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 9.4e-113 411.0 346 63.0
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 2.7e-112 409.5 357 63.3
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 6.3e-109 398.3 340 62.4
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 1.8e-108 396.7 354 62.1
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 4.5e-107 392.1 353 61.8
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 1.3e-106 390.6 356 60.7
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 3.6e-104 382.5 351 61.0
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.5e-102 377.1 334 62.3
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 4.4e-102 375.6 359 57.7
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 7.5e-102 374.8 336 61.3
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 1.3e-98 364.0 353 55.2
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 2.5e-97 359.8 362 55.8
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 3.3e-97 359.4 335 55.8
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 9.5e-97 357.8 346 57.5
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 2.8e-96 356.3 353 55.8
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 3.6e-96 355.9 362 55.0
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 3.6e-96 355.9 345 56.2
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 3.6e-96 355.9 362 55.0
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 1.8e-95 353.6 340 56.2
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 3.0e-95 352.8 376 55.3
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 2.6e-94 349.7 348 56.0
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 3.4e-94 349.4 340 57.1
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 3.4e-94 349.4 340 56.5
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 1.3e-93 347.4 335 56.4
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 1.3e-93 347.4 335 56.4
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.3e-93 347.4 381 54.1
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.3e-93 347.4 381 54.1
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 1.3e-93 347.4 353 54.1
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 1.3e-93 347.4 341 55.4
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 2.8e-93 346.3 341 54.0
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 8.3e-93 344.7 343 55.1
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 8.3e-93 344.7 339 55.5
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.1e-92 344.4 361 54.3
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 1.4e-92 344.0 341 56.0
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 1.4e-92 344.0 339 55.5
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 1.8e-92 343.6 329 55.3
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 4.1e-92 342.4 336 56.0
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 9.2e-92 341.3 340 55.3
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 9.2e-92 341.3 340 55.3
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 9.2e-92 341.3 340 55.3
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 9.2e-92 341.3 340 55.3
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 1.2e-91 340.9 361 53.2
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 1.6e-91 340.5 345 55.1
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 2.7e-91 339.7 356 55.3
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 4.5e-91 339.0 334 55.1
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 4.5e-91 339.0 361 52.9
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.0e-90 337.8 339 55.5
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 1.3e-90 337.4 356 55.1
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 1.7e-90 337.0 361 52.9
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 5.0e-90 335.5 352 54.5
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 6.6e-90 335.1 326 55.8
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 6.6e-90 335.1 361 54.0
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 8.6e-90 334.7 340 55.0
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.1e-89 334.3 338 53.6
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.1e-89 334.3 361 53.7
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 1.1e-89 334.3 378 51.1
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 2.5e-89 333.2 360 55.3
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 3.3e-89 332.8 351 52.1
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 4.3e-89 332.4 340 53.2
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 9.5e-89 331.3 341 54.3
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 2.1e-88 330.1 333 53.2
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 3.6e-88 329.3 354 52.8
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 4.7e-88 328.9 359 52.9
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 6.1e-88 328.6 352 51.1
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 1.0e-87 327.8 337 54.3
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 2.3e-87 326.6 341 54.0
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.5e-86 323.9 349 51.9
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 2.0e-86 323.6 334 53.3
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 2.0e-86 323.6 361 51.8
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 2.6e-86 323.2 358 52.5
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 2.6e-86 323.2 352 51.7
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 4.4e-86 322.4 331 54.4
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 1.3e-85 320.9 354 51.1
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 1.8e-84 317.0 339 53.1
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 2.4e-84 316.6 358 52.0
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 7.0e-84 315.1 339 54.3
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 9.2e-84 314.7 354 53.1
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 1.2e-83 314.3 359 51.8
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 6.0e-83 312.0 334 52.1
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 1.0e-82 311.2 314 55.1
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 3.0e-82 309.7 358 52.5
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 6.6e-82 308.5 278 58.6
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 7.3e-81 305.1 356 51.4
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 1.2e-80 304.3 357 51.0
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 7.5e-78 295.0 332 50.3
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 1.7e-77 293.9 348 48.9
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 6.0e-75 285.4 340 49.1
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 6.0e-75 285.4 363 47.4
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 3.6e-72 276.2 342 47.4
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 3.6e-72 276.2 339 46.6
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 8.1e-72 275.0 332 47.3
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 1.1e-71 274.6 349 47.0
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 5.4e-68 262.3 341 44.0
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.7e-66 257.3 199 66.3
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 4.7e-64 249.2 349 42.4
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 1.4e-63 247.7 356 43.8
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.2e-62 244.6 351 42.7
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 3.4e-62 243.0 219 56.2
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 1.6e-56 224.2 167 64.7
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 1.3e-53 214.5 383 37.9
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 4.9e-53 212.6 212 51.9
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 6.0e-51 205.7 129 74.4
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 6.6e-50 202.2 323 40.6
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 4.5e-46 189.5 362 35.1
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 2.2e-45 187.2 128 66.4
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 3.8e-45 186.4 413 36.6
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 1.1e-44 184.9 260 46.2
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 3.9e-42 176.4 326 39.6
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.9e-41 174.1 333 36.9
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 5.8e-38 162.5 328 36.0
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 3.2e-36 156.8 342 31.9
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 1.2e-35 154.8 216 46.8
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 8.7e-34 148.7 87 80.5
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 5.6e-33 146.0 326 36.2
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 7.6e-30 135.6 262 40.1
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 3.8e-29 133.3 327 30.9
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 4.8e-24 116.3 87 58.6
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 4.1e-23 113.2 172 47.1
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 9.0e-23 112.1 129 48.8
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 9.4e-20 102.1 62 77.4
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 7.9e-19 99.0 93 58.1
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 7.4e-17 92.4 140 42.1
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 1.7e-16 91.3 132 33.3
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 4.5e-14 83.2 60 66.7
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 5.7e-09 66.2 106 43.4
MCO14G569 Micromonas commoda HOM05D033910 ORTHO05D034414 9.1e-07 58.9 101 31.7
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.5e-06 58.2 58 53.4


User provided reference genes

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