Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 8.5e-166 587.0 317 100.0
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 4.5e-82 308.9 320 59.1
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 7.6e-82 308.1 320 59.1
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 1.7e-81 307.0 321 57.9
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 4.9e-81 305.4 321 58.3
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.6e-79 300.4 319 59.9
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 7.9e-79 298.1 310 58.4
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 1.9e-77 293.5 323 56.3
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 9.6e-77 291.2 305 62.6
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 2.4e-75 286.6 371 50.7
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 5.3e-75 285.4 429 45.5
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 7.4e-69 265.0 249 62.2
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 7.4e-69 265.0 249 62.7
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 9.0e-67 258.1 313 53.7
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 1.2e-66 257.7 246 61.8
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 2.6e-66 256.5 325 52.6
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.5e-64 250.0 294 53.7
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 6.1e-63 245.4 308 53.2
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 6.7e-62 241.9 325 50.8
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.9e-61 240.4 318 49.4
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 3.7e-60 236.1 310 51.9
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 1.1e-59 234.6 250 58.0
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 1.8e-59 233.8 332 48.5
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 1.2e-58 231.1 310 51.6
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 5.9e-58 228.8 228 58.8
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 1.0e-57 228.0 236 55.9
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 2.2e-57 226.9 264 54.5
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 6.5e-57 225.3 331 50.5
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 1.4e-56 224.2 310 49.4
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 1.9e-56 223.8 310 49.4
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 5.5e-56 222.2 305 50.8
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 9.4e-56 221.5 232 59.5
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 9.4e-56 221.5 238 57.1
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 3.6e-55 219.5 244 56.1
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 3.6e-55 219.5 292 51.7
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 1.0e-54 218.0 194 63.4
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 2.3e-54 216.9 308 46.8
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 3.0e-54 216.5 238 55.5
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 3.9e-54 216.1 318 48.1
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 3.9e-54 216.1 304 51.3
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 3.9e-54 216.1 237 55.3
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 2.0e-53 213.8 293 51.9
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 2.0e-53 213.8 275 51.6
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.6e-53 213.4 212 58.5
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 3.3e-53 213.0 230 56.1
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 5.7e-53 212.2 302 50.0
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 7.4e-53 211.8 317 49.8
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.3e-52 211.1 329 45.0
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.8e-52 209.9 277 52.0
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 3.7e-52 209.5 233 54.5
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 4.8e-52 209.1 218 58.3
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 4.8e-52 209.1 217 59.9
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 6.3e-52 208.8 236 57.6
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 6.3e-52 208.8 240 55.8
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 8.2e-52 208.4 234 55.1
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 1.1e-51 208.0 287 48.4
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.8e-51 207.2 209 60.3
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 1.8e-51 207.2 302 49.7
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 9.1e-51 204.9 322 45.0
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.6e-50 203.4 193 62.2
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 4.5e-50 202.6 278 51.1
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 7.7e-50 201.8 293 47.4
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 1.0e-49 201.4 276 51.8
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 1.3e-49 201.1 278 50.7
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 2.2e-49 200.3 208 59.6
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 2.2e-49 200.3 208 58.7
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 2.9e-49 199.9 208 58.7
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.4e-48 197.6 285 49.8
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 1.9e-48 197.2 235 56.2
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 5.5e-48 195.7 249 50.6
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 7.2e-48 195.3 327 43.4
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 7.2e-48 195.3 235 55.7
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 9.4e-48 194.9 189 62.4
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 1.6e-47 194.1 160 68.8
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 4.7e-47 192.6 189 61.4
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 7.9e-47 191.8 279 46.2
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 7.9e-47 191.8 220 55.5
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 2.3e-46 190.3 220 55.0
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 3.0e-46 189.9 240 51.2
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 6.7e-46 188.7 229 52.4
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 8.8e-46 188.3 281 45.6
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 8.8e-46 188.3 227 52.9
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.5e-45 187.6 282 47.5
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 3.3e-45 186.4 250 48.8
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 3.3e-45 186.4 310 45.2
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 3.3e-45 186.4 222 55.0
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 5.7e-45 185.7 218 53.7
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 7.4e-45 185.3 250 48.4
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 9.7e-45 184.9 246 50.4
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.3e-44 184.5 234 50.4
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 2.2e-44 183.7 258 48.1
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 2.8e-44 183.3 297 47.8
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 2.8e-44 183.3 286 46.9
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 3.7e-44 183.0 250 48.8
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 4.8e-44 182.6 275 52.0
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 6.3e-44 182.2 152 65.8
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 6.3e-44 182.2 201 57.2
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 8.2e-44 181.8 301 44.5
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 8.2e-44 181.8 301 44.5
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 3.1e-43 179.9 301 42.9
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 5.3e-43 179.1 313 45.0
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 5.3e-43 179.1 279 47.3
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.2e-42 177.9 205 56.1
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 7.7e-42 175.3 304 44.1
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 2.9e-41 173.3 239 49.4
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 3.8e-41 172.9 316 42.1
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 5.0e-41 172.6 221 51.1
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 7.2e-40 168.7 172 56.4
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 9.4e-40 168.3 157 60.5
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 9.4e-40 168.3 159 59.1
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 2.7e-39 166.8 174 58.0
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 4.7e-39 166.0 309 43.0
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 1.4e-38 164.5 262 45.4
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 3.0e-38 163.3 154 58.4
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 6.7e-38 162.2 227 48.0
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 6.7e-38 162.2 218 53.2
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 2.0e-37 160.6 143 67.1
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 8.2e-36 155.2 175 56.0
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 5.9e-34 149.1 150 57.3
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 7.7e-34 148.7 108 74.1
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 7.7e-34 148.7 257 41.6
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.7e-33 147.5 370 36.2
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 8.5e-33 145.2 144 61.1
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 1.5e-32 144.4 215 44.7
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 3.2e-32 143.3 216 44.9
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 2.3e-30 137.1 247 42.5
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 3.0e-30 136.7 112 71.4
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 6.3e-28 129.0 200 48.5
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.6e-26 124.4 224 43.8
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 4.5e-26 122.9 86 75.6
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.6e-23 113.2 119 61.3
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.0e-22 111.7 155 50.3
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.4e-22 111.3 133 51.1
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.6e-21 107.1 103 56.3
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 2.0e-18 97.4 101 59.4
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 1.3e-17 94.7 194 38.7
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.3e-17 94.0 102 59.8
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 2.3e-17 94.0 160 39.4
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 1.1e-16 91.7 120 44.2
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 4.3e-16 89.7 61 78.7
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 2.8e-15 87.0 162 38.9
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 8.0e-15 85.5 141 40.4
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.0e-13 80.9 109 51.4
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.0e-13 80.9 54 74.1
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 4.4e-13 79.7 117 52.1
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 3.2e-11 73.6 46 82.6
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.7e-09 67.8 49 75.5
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.1e-06 58.5 168 32.1
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 1.8e-06 57.8 139 32.4


User provided reference genes

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