Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3701 Avicennia marina HOM05D001937 ORTHO05D007024 0.0e+00 2534.6 1268 100.0
SalBow1G8218 Salvia bowleyana HOM05D001937 ORTHO05D007024 0.0e+00 2298.5 1268 89.0
Migut.N00430 Erythranthe guttata HOM05D001937 ORTHO05D007024 0.0e+00 2290.8 1266 88.6
Atru.chr12.1853 Acer truncatum HOM05D001937 ORTHO05D007024 0.0e+00 2198.7 1267 85.2
Manes.11G123000 Manihot esculenta HOM05D001937 ORTHO05D007024 0.0e+00 2187.9 1268 83.9
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 0.0e+00 2186.8 1268 84.3
Potri.004G091000 Populus trichocarpa HOM05D001937 ORTHO05D007024 0.0e+00 2186.4 1261 84.9
Lj1P823T23 Lonicera japonica HOM05D001937 ORTHO05D007024 0.0e+00 2185.2 1267 84.8
Sabra04G0061200 Salix brachista HOM05D001937 ORTHO05D007024 0.0e+00 2179.8 1261 84.6
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 2178.7 1268 84.1
Nitab4.5_0000761g0030 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 2178.7 1271 84.0
CSS0034620 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2173.3 1267 84.1
TWI12G0886 Tripterygium wilfordii HOM05D001937 ORTHO05D007024 0.0e+00 2172.1 1267 83.7
Ciclev10018533m.g Citrus clementina HOM05D001937 ORTHO05D007024 0.0e+00 2171.7 1267 84.1
QL11p024047 Quercus lobata HOM05D001937 ORTHO05D007024 0.0e+00 2171.4 1267 84.1
CiPaw.10G131100 Carya illinoinensis HOM05D001937 ORTHO05D007024 0.0e+00 2170.6 1267 84.1
CSS0040995 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2169.4 1267 84.1
Sopen09g005280 Solanum pennellii HOM05D001937 ORTHO05D007024 0.0e+00 2168.7 1267 83.5
COL.COLO4_33143 Corchorus olitorius HOM05D001937 ORTHO05D007024 0.0e+00 2166.7 1268 83.1
Solyc09g010560.3 Solanum lycopersicum HOM05D001937 ORTHO05D007024 0.0e+00 2165.6 1267 83.3
Duzib132G1189 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2164.4 1268 83.0
Gohir.D02G190400 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2164.4 1267 83.0
Gorai.005G213100 Gossypium raimondii HOM05D001937 ORTHO05D007024 0.0e+00 2163.3 1267 83.1
Thecc.02G153900 Theobroma cacao HOM05D001937 ORTHO05D007024 0.0e+00 2162.5 1268 83.0
PGSC0003DMG400008847 Solanum tuberosum HOM05D001937 ORTHO05D007024 0.0e+00 2161.3 1267 83.3
Cc09_g08410 Coffea canephora HOM05D001937 ORTHO05D007024 0.0e+00 2159.8 1267 84.1
Gohir.A03G167300 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2159.0 1267 83.0
Hma1.2p1_0587F.1_g184190 Hydrangea macrophylla HOM05D001937 ORTHO05D007024 0.0e+00 2156.3 1266 83.1
CAN.G97.40 Capsicum annuum HOM05D001937 ORTHO05D007024 0.0e+00 2153.3 1270 83.1
Prupe.2G098100 Prunus persica HOM05D001937 ORTHO05D007024 0.0e+00 2152.9 1268 83.1
Duzib248G1173 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2152.1 1268 82.6
Aa31LG9G17330 Aethionema arabicum HOM05D001937 ORTHO05D007024 0.0e+00 2149.4 1267 82.6
unitig_0.g658 Utricularia gibba HOM05D001937 ORTHO05D007024 0.0e+00 2147.9 1267 83.1
Rhsim09G0056700 Rhododendron simsii HOM05D001937 ORTHO05D007024 0.0e+00 2146.3 1263 83.2
RcHm_v2.0_Chr1g0337071 Rosa chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2145.2 1267 83.3
THA.LOC104823845 Tarenaya hassleriana HOM05D001937 ORTHO05D007024 0.0e+00 2144.8 1267 83.1
Sc14g0006180 Simmondsia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2144.0 1269 82.9
AUR62008924 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2143.6 1269 82.5
MD07G1077100 Malus domestica HOM05D001937 ORTHO05D007024 0.0e+00 2139.0 1268 82.7
FvH4_7g07120 Fragaria vesca HOM05D001937 ORTHO05D007024 0.0e+00 2137.8 1268 83.2
Cpa.g.sc41.77 Carica papaya HOM05D001937 ORTHO05D007024 0.0e+00 2137.1 1268 82.3
Eucgr.I01066 Eucalyptus grandis HOM05D001937 ORTHO05D007024 0.0e+00 2136.7 1266 82.2
PSO017G7212 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2136.3 1267 82.7
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2135.9 1269 82.5
FAN06G4695 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2132.5 1268 83.0
EL10Ac7g17851 Beta vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2132.1 1267 81.9
FAN03G1993 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2132.1 1268 82.9
Ah.08g214380 Amaranthus hybridus HOM05D001937 ORTHO05D007024 0.0e+00 2130.5 1267 81.5
CsaV3_6G000030 Cucumis sativus L. HOM05D001937 ORTHO05D007024 0.0e+00 2130.1 1269 81.9
DCAR_003140 Daucus carota HOM05D001937 ORTHO05D007024 0.0e+00 2129.8 1266 82.3
MELO3C021250.2 Cucumis melo HOM05D001937 ORTHO05D007024 0.0e+00 2127.1 1269 81.9
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2124.0 1263 83.1
Lj4g0006057 Lotus japonicus HOM05D001937 ORTHO05D007024 0.0e+00 2124.0 1267 81.6
A07p19500 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2122.8 1267 81.6
BraA07t29656Z Brassica rapa HOM05D001937 ORTHO05D007024 0.0e+00 2122.4 1267 81.6
Sp7g04200 Schrenkiella parvula HOM05D001937 ORTHO05D007024 0.0e+00 2122.4 1267 81.5
Medtr4g093870 Medicago truncatula HOM05D001937 ORTHO05D007024 0.0e+00 2121.7 1267 81.9
PSO478G1455 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2121.3 1267 82.2
Actinidia06125 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2120.9 1239 83.8
ECA233G4596 Erigeron canadensis HOM05D001937 ORTHO05D007024 0.0e+00 2120.5 1262 82.6
BolC6t36984H Brassica oleracea HOM05D001937 ORTHO05D007024 0.0e+00 2120.1 1267 81.3
C06p17940 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2119.0 1267 81.3
HanXRQChr10g0312981 Helianthus annuus HOM05D001937 ORTHO05D007024 0.0e+00 2119.0 1267 82.1
Thhalv10027622m.g Eutrema salsugineum HOM05D001937 ORTHO05D007024 0.0e+00 2117.8 1267 81.4
Carub.0007s3301 Capsella rubella HOM05D001937 ORTHO05D007024 0.0e+00 2114.3 1267 81.2
MBI05_g10862_MAGBIO Magnolia biondii HOM05D001937 ORTHO05D007024 0.0e+00 2113.6 1273 82.0
AL7G46730 Arabidopsis lyrata HOM05D001937 ORTHO05D007024 0.0e+00 2112.0 1267 81.1
CARHR214920 Cardamine hirsuta HOM05D001937 ORTHO05D007024 0.0e+00 2112.0 1268 81.2
Aqoxy4G02972 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2109.7 1268 81.5
Lsat_1_v5_gn_6_11080 Lactuca sativa HOM05D001937 ORTHO05D007024 0.0e+00 2109.3 1268 81.6
AT5G37830 Arabidopsis thaliana HOM05D001937 ORTHO05D007024 0.0e+00 2108.6 1268 80.8
Glyma.08G069400 Glycine max HOM05D001937 ORTHO05D007024 0.0e+00 2106.3 1267 80.9
Aqoxy2G01413 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2104.7 1268 81.3
Phvul.002G211700 Phaseolus vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2102.0 1266 80.7
Ca_18373_v3 Cicer arietinum L. HOM05D001937 ORTHO05D007024 0.0e+00 2100.9 1268 80.4
FAN01G0178 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2100.9 1268 82.1
CANSAT01G0692 Cannabis sativa HOM05D001937 ORTHO05D007024 0.0e+00 2099.3 1267 82.1
ClCG05G003000 Citrullus lanatus HOM05D001937 ORTHO05D007024 0.0e+00 2097.0 1249 82.0
arahy.Tifrunner.gnm1.ann1.EYG9NG Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2096.6 1268 81.0
Sed0024188 Sechium edule HOM05D001937 ORTHO05D007024 0.0e+00 2093.2 1266 80.8
Dinv02213 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 2092.0 1208 85.1
BcaB02g08024 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 2091.6 1267 80.6
VMungo0251G0821 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 2087.4 1267 80.0
Nn2g12806 Nelumbo nucifera HOM05D001937 ORTHO05D007024 0.0e+00 2081.2 1249 81.4
TPR.G2837 Trifolium pratense HOM05D001937 ORTHO05D007024 0.0e+00 2058.9 1267 79.7
PGR142G3997 Punica granatum HOM05D001937 ORTHO05D007024 0.0e+00 2044.6 1274 79.8
Lalb_Chr05g0217681 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 2036.5 1267 78.4
arahy.Tifrunner.gnm1.ann1.TT5FZ7 Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2033.5 1270 77.6
Zm00001eb021240 Zea mays HOM05D001937 ORTHO05D007024 0.0e+00 2028.4 1266 78.4
Peaxi162Scf00165g01826 Petunia axillaris HOM05D001937 ORTHO05D007024 0.0e+00 2026.1 1267 78.9
Os01g0966000 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D007024 0.0e+00 2017.3 1267 78.7
ATR0559G108 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2009.2 1267 78.5
ATR0559G369 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 1965.7 1266 77.1
SEGI_01532 Sequoiadendron giganteum HOM05D001937 ORTHO05D007024 0.0e+00 1942.2 1268 75.2
Aqoxy2G01407 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1919.8 1161 81.6
SHI12658 Sapria himalayana HOM05D001937 ORTHO05D007024 0.0e+00 1905.2 1269 72.8
CDE04G1916 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1875.9 1271 73.8
SGA_v2.0_scaffold14G07136 Striga asiatica HOM05D001937 ORTHO05D007024 0.0e+00 1854.0 1129 82.6
Mapoly0035s0055 Marchantia polymorpha HOM05D001937 ORTHO05D007024 0.0e+00 1845.1 1269 71.0
CDE07G0097 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1832.8 1192 77.3
AagrBONN_evm.TU.Sc2ySwM_368.2008 Anthoceros agrestis HOM05D001937 ORTHO05D007024 0.0e+00 1830.8 1245 73.0
BcaC08g44352 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 1806.2 1069 82.1
SMO147G0274 Selaginella moellendorffii HOM05D001937 ORTHO05D007024 0.0e+00 1801.6 1269 70.4
Psat7g100640 Pisum sativum HOM05D001937 ORTHO05D007024 0.0e+00 1801.2 1088 80.8
Nitab4.5_0004091g0060 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 1771.5 1271 71.5
Actinidia11252 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1764.6 1268 71.0
Lalb_Chr16g0382831 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 1597.0 962 79.9
MCO14G182 Micromonas commoda HOM05D001937 ORTHO05D007024 0.0e+00 1536.2 1323 60.4
Pp3c19_22940 Physcomitrium patens HOM05D001937 ORTHO05D007024 0.0e+00 1518.8 1046 71.9
Oeu029564.1 Olea europaea HOM05D001937 ORTHO05D007024 0.0e+00 1422.1 815 85.5
GSVIVG01034203001 Vitis vinifera HOM05D001937 ORTHO05D007024 0.0e+00 1337.8 1266 58.8
Cfa025426 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 1317.4 1334 53.3
Cre07.g325748 Chlamydomonas reinhardtii HOM05D001937 ORTHO05D007024 0.0e+00 1298.5 1392 52.2
TAR636G0878 Trochodendron aralioides HOM05D001937 ORTHO05D007024 0.0e+00 1224.9 725 83.9
VMungo0251G0025 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 1145.6 1083 58.4
Dinv02208 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 1113.6 811 70.4
Dinv10935 Davidia involucrata HOM05D001937 ORTHO05D007024 2.8e-260 902.9 570 79.1
PRCOL_00004137 Prasinoderma coloniale HOM05D001937 ORTHO05D007024 1.9e-256 890.2 1243 40.9
TAR636G1691 Trochodendron aralioides HOM05D001937 ORTHO05D007024 4.3e-253 879.0 502 84.7
CBR_g26054 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-217 760.4 655 58.8
MD02G1239500 Malus domestica HOM05D001937 ORTHO05D007024 1.9e-216 757.3 526 73.2
TAR636G2433 Trochodendron aralioides HOM05D001937 ORTHO05D007024 7.3e-192 675.6 454 77.5
TAR636G1243 Trochodendron aralioides HOM05D001937 ORTHO05D007024 8.9e-182 642.1 389 81.5
CBR_g26059 Chara braunii HOM05D001937 ORTHO05D007024 2.2e-132 478.0 359 69.1
Potri.017G124400 Populus trichocarpa HOM05D001937 ORTHO05D007024 5.3e-118 430.3 313 72.5
Lalb_Chr16g0382841 Lupinus albus HOM05D001937 ORTHO05D007024 2.6e-104 384.8 270 71.5
Oeu061583.3 Olea europaea HOM05D001937 ORTHO05D007024 1.3e-84 319.3 480 43.5
SalBow2G0807 Salvia bowleyana HOM05D001937 ORTHO05D007024 7.3e-75 287.0 170 82.4
SalBow1G2752 Salvia bowleyana HOM05D001937 ORTHO05D007024 2.3e-73 282.0 170 81.8
SalBow1G1280 Salvia bowleyana HOM05D001937 ORTHO05D007024 8.9e-73 280.0 170 81.2
HPP92_019823 Vanilla planifolia HOM05D001937 ORTHO05D007024 5.1e-60 237.7 138 84.8
ECA234G0635 Erigeron canadensis HOM05D001937 ORTHO05D007024 8.6e-60 236.9 234 55.1
TAR636G3286 Trochodendron aralioides HOM05D001937 ORTHO05D043971 1.2e-48 199.9 116 79.3
TAR636G2347 Trochodendron aralioides HOM05D001937 ORTHO05D007024 5.8e-40 171.0 91 89.0
HPP92_019822 Vanilla planifolia HOM05D001937 ORTHO05D007024 1.4e-38 166.4 154 64.9
ECA234G4540 Erigeron canadensis HOM05D016619 ORTHO05D007024 3.5e-37 161.8 183 51.9
CBR_g39219 Chara braunii HOM05D001937 ORTHO05D043971 2.2e-31 142.5 99 66.7
HPP92_019824 Vanilla planifolia HOM05D001937 ORTHO05D007024 6.9e-25 120.9 104 58.7


User provided reference genes

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