Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 8.7e-137 490.3 256 100.0
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.7e-60 236.9 232 59.9
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 5.1e-60 235.3 222 59.9
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 5.6e-59 231.9 223 59.6
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 1.8e-57 226.9 230 60.9
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 8.9e-57 224.6 233 61.4
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 8.9e-57 224.6 223 58.7
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 2.1e-53 213.4 230 58.3
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 4.3e-51 205.7 239 56.5
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 2.8e-50 203.0 233 57.9
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 1.6e-45 187.2 232 54.7
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 1.6e-45 187.2 232 54.7
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 3.5e-45 186.0 245 51.0
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 1.7e-44 183.7 238 53.8
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 5.1e-44 182.2 262 47.3
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 3.6e-42 176.0 208 54.3
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.8e-41 173.7 175 60.0
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 3.1e-41 172.9 237 51.1
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 5.3e-41 172.2 218 54.1
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 4.5e-40 169.1 230 50.4
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 5.8e-40 168.7 229 52.0
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 7.6e-40 168.3 231 51.5
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 9.9e-40 167.9 245 47.8
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 1.4e-38 164.1 240 50.4
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.4e-38 164.1 230 49.1
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 1.9e-38 163.7 218 52.3
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 7.1e-38 161.8 240 49.6
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 1.6e-37 160.6 233 50.6
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 7.9e-37 158.3 181 55.8
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.3e-36 157.5 255 47.5
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 2.3e-36 156.8 238 49.2
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 2.3e-36 156.8 257 47.1
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 5.1e-36 155.6 228 48.7
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 1.1e-35 154.5 218 47.7
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 1.1e-35 154.5 229 48.0
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 1.9e-35 153.7 218 50.9
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 1.9e-35 153.7 235 49.8
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 1.9e-35 153.7 237 50.2
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 9.6e-35 151.4 229 48.0
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 2.8e-34 149.8 238 47.9
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 3.7e-34 149.4 218 49.5
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 4.8e-34 149.1 223 49.8
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 6.2e-34 148.7 219 47.9
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 5.3e-33 145.6 217 47.9
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 4.5e-32 142.5 241 47.7
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 2.2e-31 140.2 217 46.1
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 2.9e-31 139.8 221 45.2
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 1.6e-29 134.0 220 48.2
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.9e-29 131.7 216 47.2
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 1.0e-28 131.3 236 43.2
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 5.1e-28 129.0 222 46.4
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 8.7e-28 128.3 228 43.4
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 8.7e-28 128.3 217 46.1
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.3e-27 126.3 206 48.1
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 7.4e-27 125.2 215 44.2
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 2.1e-26 123.6 212 46.2
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.8e-26 123.2 212 43.4
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.0e-25 119.4 216 45.8
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 6.9e-25 118.6 252 42.9
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 6.9e-25 118.6 132 55.3
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 9.0e-25 118.2 189 50.8
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 9.0e-25 118.2 195 46.7
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 7.6e-24 115.2 235 40.4
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 1.3e-23 114.4 254 40.2
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 1.7e-23 114.0 236 39.8
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.7e-23 114.0 254 40.2
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.7e-23 114.0 254 40.2
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 1.7e-23 114.0 188 47.9
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 8.4e-23 111.7 234 41.5
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 1.1e-22 111.3 185 49.7
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 1.1e-22 111.3 222 43.2
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 1.4e-22 110.9 258 38.8
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.9e-22 110.5 212 43.4
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.5e-22 110.2 238 39.9
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 2.5e-22 110.2 198 46.0
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 3.2e-22 109.8 247 39.7
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 5.5e-22 109.0 185 47.0
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 1.2e-21 107.8 164 51.2
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 2.1e-21 107.1 183 47.0
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 4.6e-21 105.9 195 42.1
SalBow7G1622 Salvia bowleyana HOM05D004795 ORTHO05D005518 6.0e-21 105.5 121 57.0
SalBow7G4115 Salvia bowleyana HOM05D004795 ORTHO05D005518 6.0e-21 105.5 121 57.0
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 6.0e-21 105.5 243 37.0
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 7.9e-21 105.1 245 40.0
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 1.0e-20 104.8 212 40.6
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.3e-20 104.4 217 40.1
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.3e-20 103.6 220 43.2
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 5.1e-20 102.4 233 42.9
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 5.1e-20 102.4 236 42.8
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 5.1e-20 102.4 196 45.9
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 6.7e-20 102.1 220 42.7
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-19 100.9 236 42.8
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-19 100.9 236 42.8
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.9e-19 100.5 122 59.8
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.5e-19 100.1 174 42.5
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.5e-19 100.1 174 41.4
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 2.5e-19 100.1 86 66.3
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 4.3e-19 99.4 254 37.8
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 5.7e-19 99.0 185 40.5
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 9.7e-19 98.2 174 41.4
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 4.8e-18 95.9 238 41.6
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 6.3e-18 95.5 260 35.4
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.1e-17 94.7 263 35.4
CAN.G358.61 Capsicum annuum HOM05D004795 ORTHO05D005518 1.4e-17 94.4 90 60.0
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 6.9e-17 92.0 197 38.6
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 9.0e-17 91.7 234 36.3
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 9.0e-17 91.7 242 35.5
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 9.0e-17 91.7 107 57.9
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.2e-16 91.3 124 47.6
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 1.5e-16 90.9 246 36.6
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.5e-16 90.9 109 57.8
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 3.4e-16 89.7 159 40.3
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 3.4e-16 89.7 189 41.3
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 4.5e-16 89.4 260 34.2
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.0e-15 88.2 244 36.1
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 1.0e-15 88.2 246 35.8
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.2e-15 87.0 262 33.2
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 2.9e-15 86.7 218 34.4
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.9e-15 86.7 255 36.1
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 5.0e-15 85.9 222 34.7
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 8.5e-15 85.1 223 36.8
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 1.4e-14 84.3 239 35.1
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.4e-14 84.3 234 40.6
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 5.5e-14 82.4 219 37.9
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 5.5e-14 82.4 197 36.0
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.2e-14 82.0 286 34.3
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 9.4e-14 81.6 220 35.0
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 1.2e-13 81.3 173 37.6
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.6e-13 80.9 194 36.6
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 3.6e-13 79.7 227 34.4
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 3.6e-13 79.7 227 32.6
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 4.6e-13 79.3 194 37.6
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 7.9e-13 78.6 180 37.8
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.3e-12 77.0 174 38.5
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 6.7e-12 75.5 225 33.3
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 6.7e-12 75.5 213 34.7
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 5.7e-11 72.4 121 44.6
CAN.G1425.14 Capsicum annuum HOM05D004795 ORTHO05D005518 2.2e-10 70.5 65 63.1
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.2e-10 70.5 182 38.5
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.2e-10 70.5 165 39.4
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 2.2e-10 70.5 172 33.7
SalBow3G3444 Salvia bowleyana HOM05D004795 ORTHO05D005518 2.8e-10 70.1 63 57.1
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 3.7e-10 69.7 272 30.1
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 4.8e-10 69.3 179 34.1
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 1.1e-09 68.2 196 36.2
unitig_748.g8746 Utricularia gibba HOM05D004795 ORTHO05D005518 1.1e-09 68.2 149 39.6
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 1.4e-09 67.8 143 38.5
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 1.8e-09 67.4 203 32.5
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 9.1e-09 65.1 159 33.3
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 1.2e-08 64.7 336 27.4
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.2e-06 55.5 90 45.6


User provided reference genes

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