Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 4.6e-160 567.8 274 100.0
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 2.2e-93 346.3 256 67.2
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 2.6e-86 322.8 194 76.3
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 3.5e-83 312.4 172 82.6
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 6.6e-82 308.1 202 70.8
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 1.1e-81 307.4 180 77.8
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.9e-81 306.6 202 70.8
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 3.3e-81 305.8 252 60.7
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 4.3e-81 305.4 185 76.2
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 5.6e-81 305.1 250 61.2
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 3.6e-80 302.4 187 74.3
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 4.7e-80 302.0 187 74.9
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 6.2e-80 301.6 185 74.6
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 2.6e-78 296.2 182 74.7
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 2.6e-78 296.2 178 75.8
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 2.6e-78 296.2 185 74.1
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 5.8e-78 295.0 181 72.4
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 9.8e-78 294.3 184 73.9
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 9.8e-78 294.3 186 72.0
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 1.3e-77 293.9 180 74.4
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 2.9e-77 292.7 186 72.0
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 3.7e-77 292.4 185 74.6
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 4.9e-77 292.0 193 70.5
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 6.4e-77 291.6 182 73.6
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 6.4e-77 291.6 180 71.7
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 1.1e-76 290.8 215 67.9
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 1.4e-76 290.4 203 68.0
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 1.4e-76 290.4 184 72.3
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.4e-76 290.4 180 73.3
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 4.1e-76 288.9 185 72.4
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 3.5e-75 285.8 192 71.9
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 3.5e-75 285.8 185 73.0
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 4.6e-75 285.4 199 63.8
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.0e-74 284.3 190 72.6
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 1.0e-74 284.3 186 72.0
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 1.7e-74 283.5 181 72.4
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.7e-74 283.5 189 72.0
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 2.3e-74 283.1 182 72.5
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 3.0e-74 282.7 180 70.6
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 3.0e-74 282.7 184 72.8
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 3.0e-74 282.7 185 70.8
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 3.0e-74 282.7 184 73.4
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 1.1e-73 280.8 184 71.7
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 1.9e-73 280.0 182 73.1
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.9e-73 280.0 182 73.1
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 5.6e-73 278.5 160 77.5
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 7.3e-73 278.1 185 71.9
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 7.3e-73 278.1 183 72.1
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 9.5e-73 277.7 182 70.3
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 9.5e-73 277.7 184 69.0
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.2e-72 277.3 193 68.9
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.1e-72 276.6 193 68.4
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 2.1e-72 276.6 181 69.6
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 2.1e-72 276.6 184 69.0
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 2.1e-72 276.6 181 69.6
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 3.6e-72 275.8 180 70.6
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.4e-71 273.9 192 65.1
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 3.1e-71 272.7 181 69.1
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 1.2e-70 270.8 164 75.0
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 5.8e-70 268.5 178 70.8
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 7.5e-70 268.1 181 69.6
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 1.3e-69 267.3 182 70.3
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 1.3e-69 267.3 178 71.9
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 3.7e-69 265.8 162 75.9
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 4.1e-68 262.3 182 68.7
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 7.1e-68 261.5 184 67.9
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 9.2e-68 261.2 199 61.8
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 2.7e-67 259.6 189 64.0
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 3.5e-67 259.2 206 60.7
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 3.5e-67 259.2 207 61.4
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 4.6e-67 258.8 188 63.3
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 4.6e-67 258.8 188 63.3
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 7.8e-67 258.1 184 65.8
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 1.3e-66 257.3 184 64.7
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 3.9e-66 255.8 207 62.3
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 3.9e-66 255.8 177 66.1
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 5.1e-66 255.4 185 63.2
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 6.6e-66 255.0 186 61.3
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 3.3e-65 252.7 193 60.6
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.3e-65 252.7 186 64.0
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 3.3e-65 252.7 187 63.1
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 3.3e-65 252.7 187 63.1
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 3.3e-65 252.7 185 62.7
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 2.1e-64 250.0 180 67.2
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 2.8e-64 249.6 185 62.7
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 3.1e-63 246.1 186 62.9
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 6.8e-63 245.0 188 61.7
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.2e-62 244.2 193 59.6
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 1.2e-62 244.2 181 60.2
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 2.6e-62 243.0 175 61.7
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 3.4e-62 242.7 193 60.6
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 6.4e-61 238.4 189 58.7
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 8.4e-61 238.0 184 58.7
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 8.4e-61 238.0 168 66.1
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 1.1e-60 237.7 165 67.3
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.4e-60 236.5 182 64.3
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 4.1e-60 235.7 182 61.0
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 1.2e-59 234.2 193 58.0
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 3.5e-59 232.6 175 62.9
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 3.5e-59 232.6 182 59.3
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 3.0e-58 229.6 195 55.4
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 5.1e-58 228.8 168 66.1
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 5.1e-58 228.8 167 63.5
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.1e-57 227.6 150 68.7
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 7.3e-57 224.9 161 62.7
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 7.3e-57 224.9 184 58.7
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 4.7e-56 222.2 179 60.3
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 4.0e-55 219.2 200 55.0
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 9.9e-54 214.5 138 75.4
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 1.7e-53 213.8 119 80.7
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 8.4e-53 211.5 192 57.8
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 4.2e-52 209.1 133 72.9
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 3.5e-51 206.1 133 72.2
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 6.0e-51 205.3 183 51.4
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 9.6e-49 198.0 133 66.2
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.6e-46 189.9 169 53.8
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 5.8e-46 188.7 203 48.3
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.4e-45 185.3 167 53.3
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.2e-44 182.6 169 52.7
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.7e-43 179.9 135 63.7
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-41 174.5 153 55.6
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.5e-41 174.1 164 51.2
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 2.4e-39 166.8 180 48.9
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 7.6e-38 161.8 191 44.5
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 6.4e-37 158.7 114 66.7
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.4e-37 158.3 137 54.0
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 2.7e-35 153.3 110 60.9
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 1.8e-34 150.6 181 44.2
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.7e-34 148.3 126 56.3
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.3e-33 146.0 168 45.2
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 6.9e-31 138.7 189 41.3
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.2e-27 127.9 85 67.1
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 1.9e-25 120.6 202 36.6
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 4.3e-25 119.4 114 50.0
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.9e-20 104.0 89 52.8
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 1.7e-13 80.9 44 81.8
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 2.1e-11 73.9 50 66.0
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 6.1e-11 72.4 45 71.1
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 8.8e-10 68.6 44 68.2
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 1.5e-09 67.8 102 43.1
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 4.4e-09 66.2 47 61.7
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.3e-08 64.7 53 54.7
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 9.1e-07 58.5 50 58.0


User provided reference genes

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