Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3540 Avicennia marina HOM05D000009 ORTHO05D000008 2.0e-112 409.5 256 100.0
Migut.L00489 Erythranthe guttata HOM05D000009 ORTHO05D000008 8.4e-31 138.3 252 54.4
Migut.L00485 Erythranthe guttata HOM05D000009 ORTHO05D000008 1.8e-28 130.6 255 53.7
MSTRG.3558 Avicennia marina HOM05D000009 ORTHO05D000008 1.3e-18 97.8 207 54.1
CSS0011964 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 1.0e-15 88.2 251 47.0
TWI09G0612 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 3.7e-10 69.7 249 41.0
Ah.10g038650 Amaranthus hybridus HOM05D000009 ORTHO05D000008 8.2e-10 68.6 212 44.8
QL02p065249 Quercus lobata HOM05D000009 ORTHO05D000008 8.2e-10 68.6 119 35.3
Medtr7g078640 Medicago truncatula HOM05D000009 ORTHO05D000008 1.8e-09 67.4 242 38.0
Ca_05627_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 6.9e-09 65.5 284 26.8
Medtr6g046440 Medicago truncatula HOM05D000009 ORTHO05D000008 1.5e-08 64.3 203 42.9
TPR.G24032 Trifolium pratense HOM05D000009 ORTHO05D000008 2.0e-08 63.9 272 27.2
Dinv03134 Davidia involucrata HOM05D000009 ORTHO05D000008 2.6e-08 63.5 188 30.3
Psat2g111800 Pisum sativum HOM05D000009 ORTHO05D000008 2.6e-08 63.5 220 30.5
RcHm_v2.0_Chr5g0044661 Rosa chinensis HOM05D000009 ORTHO05D000008 3.4e-08 63.2 323 23.8
Medtr0144s0010 Medicago truncatula HOM05D000009 ORTHO05D000008 4.5e-08 62.8 252 35.3
TPR.G5098 Trifolium pratense HOM05D000009 ORTHO05D000008 5.9e-08 62.4 253 29.6
TPR.G10597 Trifolium pratense HOM05D000009 ORTHO05D000008 7.7e-08 62.0 250 30.0
MSTRG.3521 Avicennia marina HOM05D000009 ORTHO05D000008 1.0e-07 61.6 34 76.5
Psat6g088040 Pisum sativum HOM05D000009 ORTHO05D000008 1.0e-07 61.6 215 41.4
Medtr6g046450 Medicago truncatula HOM05D000009 ORTHO05D000008 2.2e-07 60.5 161 28.6
TPR.G24040 Trifolium pratense HOM05D000009 ORTHO05D000008 2.2e-07 60.5 274 28.1
CANSAT54G2577 Cannabis sativa HOM05D000009 ORTHO05D000008 2.9e-07 60.1 239 46.9
Medtr5g071780 Medicago truncatula HOM05D000009 ORTHO05D000008 2.9e-07 60.1 273 27.1
Phvul.002G131200 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 2.9e-07 60.1 211 26.1
QL10p058489 Quercus lobata HOM05D000009 ORTHO05D000008 2.9e-07 60.1 245 26.9
TPR.G35752 Trifolium pratense HOM05D000003 ORTHO05D010993 2.9e-07 60.1 162 56.2
CANSAT54G2752 Cannabis sativa HOM05D000009 ORTHO05D000008 3.8e-07 59.7 237 45.6
Dinv03128 Davidia involucrata HOM05D000009 ORTHO05D000008 3.8e-07 59.7 254 29.1
Sc08g0002270 Simmondsia chinensis HOM05D000009 ORTHO05D000008 3.8e-07 59.7 186 40.9
Rhsim10G0075900 Rhododendron simsii HOM05D000009 ORTHO05D000008 5.0e-07 59.3 35 68.6
Medtr5g037460 Medicago truncatula HOM05D000009 ORTHO05D000008 6.5e-07 58.9 202 28.2
Sc08g0001790 Simmondsia chinensis HOM05D000009 ORTHO05D016219 6.5e-07 58.9 182 37.4
TPR.G40093 Trifolium pratense HOM05D000009 ORTHO05D000008 6.5e-07 58.9 276 32.2
MD11G1054600 Malus domestica HOM05D000009 ORTHO05D000008 8.5e-07 58.5 174 27.6
Medtr6g052455 Medicago truncatula HOM05D000009 ORTHO05D000008 1.1e-06 58.2 211 25.6
Os03g0566700 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D000008 1.1e-06 58.2 168 29.2
TPR.G20861 Trifolium pratense HOM05D000009 ORTHO05D000008 1.1e-06 58.2 253 28.9
Potri.003G200800 Populus trichocarpa HOM05D000009 ORTHO05D000008 1.4e-06 57.8 261 27.2
QL10p058378 Quercus lobata HOM05D000009 ORTHO05D000008 1.4e-06 57.8 245 25.7
TPR.G15797 Trifolium pratense HOM05D000009 ORTHO05D000008 1.4e-06 57.8 282 27.3
EL10Ac9g21848 Beta vulgaris HOM05D000009 ORTHO05D000008 1.9e-06 57.4 166 45.2
Nn2g15400 Nelumbo nucifera HOM05D000009 ORTHO05D000008 1.9e-06 57.4 156 53.2
Atru.chr1.3962 Acer truncatum HOM05D000009 ORTHO05D000008 2.5e-06 57.0 251 26.7
VMungo1215G0862 Vigna mungo HOM05D000009 ORTHO05D000008 2.5e-06 57.0 255 23.1
Zm00001eb291370 Zea mays HOM05D000009 ORTHO05D000008 2.5e-06 57.0 193 26.9
Prupe.2G067500 Prunus persica HOM05D000009 ORTHO05D000008 3.2e-06 56.6 246 28.5
RcHm_v2.0_Chr4g0414281 Rosa chinensis HOM05D000009 ORTHO05D000008 3.2e-06 56.6 117 34.2
Sc08g0001970 Simmondsia chinensis HOM05D000009 ORTHO05D000008 3.2e-06 56.6 172 37.8
Medtr3g086070 Medicago truncatula HOM05D000009 ORTHO05D000008 4.2e-06 56.2 202 42.1
Rhsim10G0076200 Rhododendron simsii HOM05D000009 ORTHO05D000008 4.2e-06 56.2 37 62.2
GSVIVG01032183001 Vitis vinifera HOM05D000009 ORTHO05D000008 4.2e-06 56.2 155 27.1
AUR62010202 Chenopodium quinoa HOM05D000009 ORTHO05D016219 5.5e-06 55.8 245 24.1
Gohir.A13G197850 Gossypium hirsutum HOM05D000009 ORTHO05D000008 5.5e-06 55.8 256 39.8
Prupe.5G074600 Prunus persica HOM05D000005 ORTHO05D000012 7.2e-06 55.5 134 32.1
PGSC0003DMG400021779 Solanum tuberosum HOM05D000009 ORTHO05D000008 7.2e-06 55.5 123 34.1
TPR.G10881 Trifolium pratense HOM05D000009 ORTHO05D000008 7.2e-06 55.5 249 26.5
Medtr0133s0030 Medicago truncatula HOM05D000009 ORTHO05D000008 9.4e-06 55.1 230 29.1
Medtr1g022380 Medicago truncatula HOM05D000009 ORTHO05D000008 9.4e-06 55.1 272 25.0
Hund11831 Selenicereus undatus HOM05D000009 ORTHO05D000008 9.4e-06 55.1 243 36.2
GSVIVG01037447001 Vitis vinifera HOM05D000009 ORTHO05D000008 9.4e-06 55.1 282 28.7


User provided reference genes

Program Settings