Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 4.9e-87 324.3 151 100.0
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 3.1e-49 198.7 149 65.8
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 1.0e-44 183.7 93 84.9
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 1.0e-44 183.7 93 84.9
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 2.3e-44 182.6 94 85.1
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 2.3e-44 182.6 93 84.9
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 3.9e-44 181.8 147 59.9
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 6.7e-44 181.0 142 59.9
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 5.7e-43 177.9 134 62.7
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 2.1e-42 176.0 91 81.3
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 3.7e-42 175.3 93 81.7
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 3.7e-42 175.3 92 82.6
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 4.8e-42 174.9 137 60.6
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 6.3e-42 174.5 94 77.7
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 8.2e-42 174.1 93 80.6
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 8.2e-42 174.1 138 63.0
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 1.4e-41 173.3 92 82.6
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 1.4e-41 173.3 98 74.5
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 3.1e-41 172.2 107 72.9
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 3.1e-41 172.2 100 77.0
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 5.3e-41 171.4 109 70.6
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 5.3e-41 171.4 109 70.6
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 6.9e-41 171.0 94 76.6
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.5e-40 169.9 109 69.7
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 1.5e-40 169.9 87 81.6
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 2.0e-40 169.5 93 77.4
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 2.0e-40 169.5 95 76.8
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 2.6e-40 169.1 83 85.5
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 2.6e-40 169.1 140 62.1
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 4.5e-40 168.3 95 76.8
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 4.5e-40 168.3 95 76.8
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 5.9e-40 167.9 93 78.5
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 5.9e-40 167.9 93 78.5
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 5.9e-40 167.9 93 78.5
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 7.6e-40 167.5 93 79.6
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 7.6e-40 167.5 110 65.5
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.3e-39 166.8 120 64.2
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 1.3e-39 166.8 80 86.2
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 2.2e-39 166.0 140 60.7
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 2.2e-39 166.0 137 56.9
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 2.9e-39 165.6 96 76.0
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 5.0e-39 164.9 119 65.5
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 5.0e-39 164.9 97 75.3
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 5.0e-39 164.9 90 78.9
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 6.5e-39 164.5 120 64.2
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 8.5e-39 164.1 85 82.4
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 1.1e-38 163.7 102 70.6
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 1.4e-38 163.3 96 72.9
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 1.9e-38 162.9 103 68.9
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 2.5e-38 162.5 116 68.1
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 3.2e-38 162.2 117 65.8
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 3.2e-38 162.2 96 74.0
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 4.2e-38 161.8 102 70.6
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 4.2e-38 161.8 109 68.8
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 4.2e-38 161.8 109 68.8
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 5.5e-38 161.4 116 67.2
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 5.5e-38 161.4 96 74.0
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 7.2e-38 161.0 91 74.7
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 9.3e-38 160.6 93 73.1
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 1.2e-37 160.2 89 77.5
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 2.1e-37 159.5 85 80.0
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 2.1e-37 159.5 85 81.2
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 2.7e-37 159.1 144 56.2
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 6.1e-37 157.9 105 67.6
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 6.1e-37 157.9 110 65.5
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 7.9e-37 157.5 144 55.6
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 1.0e-36 157.1 94 72.3
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 1.0e-36 157.1 92 71.7
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 2.3e-36 156.0 81 80.2
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 6.7e-36 154.5 82 79.3
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 1.1e-35 153.7 157 50.3
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 1.1e-35 153.7 94 71.3
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 1.9e-35 152.9 80 78.8
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 2.5e-35 152.5 85 76.5
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 9.7e-35 150.6 119 60.5
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 1.3e-34 150.2 81 75.3
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 6.3e-34 147.9 99 65.7
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 1.8e-33 146.4 117 59.0
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 3.4e-32 142.1 172 46.5
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 5.9e-32 141.4 80 72.5
Sabra17G0101300 Salix brachista HOM05D007646 ORTHO05D004022 1.9e-30 136.3 169 43.8
Sabra17G0103900 Salix brachista HOM05D007646 ORTHO05D004022 2.5e-30 136.0 170 43.5
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 5.5e-30 134.8 80 67.5
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 1.6e-29 133.3 80 68.8
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 7.9e-29 131.0 97 59.8
Medtr7g082970 Medicago truncatula HOM05D007646 ORTHO05D004022 1.4e-28 130.2 210 37.1
CsaV3_3G017630 Cucumis sativus L. HOM05D007646 ORTHO05D004022 1.4e-22 110.2 51 90.2
Ah.16g101400 Amaranthus hybridus HOM05D007646 ORTHO05D004022 5.5e-22 108.2 54 79.6
CSS0015077 Camellia sinensis var. sinensis HOM05D007646 ORTHO05D004022 1.0e-20 104.0 50 86.0
Peaxi162Scf00343g00059 Petunia axillaris HOM05D007646 ORTHO05D004022 2.3e-20 102.8 50 84.0
Nn4g24089 Nelumbo nucifera HOM05D007646 ORTHO05D004022 6.7e-20 101.3 90 55.6
MBI10_g07293_MAGBIO Magnolia biondii HOM05D007646 ORTHO05D004022 2.0e-19 99.8 51 80.4
unitig_748.g8495 Utricularia gibba HOM05D007646 ORTHO05D004022 3.2e-14 82.4 45 80.0
Nn3g18065 Nelumbo nucifera HOM05D007646 ORTHO05D004022 1.6e-13 80.1 44 77.3
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 1.5e-11 73.6 84 40.5
ECA246G1632 Erigeron canadensis HOM05D007646 ORTHO05D004022 5.7e-11 71.6 34 79.4
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 9.7e-11 70.9 80 41.2
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 9.7e-11 70.9 79 44.3
MELO3C020311.2 Cucumis melo HOM05D007646 ORTHO05D004022 8.2e-10 67.8 43 67.4
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 8.2e-10 67.8 87 37.9
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 9.1e-09 64.3 82 37.8
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 9.1e-09 64.3 81 38.3
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 9.1e-09 64.3 87 33.3
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 9.1e-09 64.3 79 38.0
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.2e-08 63.9 87 39.1
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 1.6e-08 63.5 87 37.9
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 2.0e-08 63.2 81 37.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 2.7e-08 62.8 87 39.1
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 2.7e-08 62.8 77 39.0
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.7e-08 62.8 98 32.7
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.7e-08 62.8 98 32.7
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 4.5e-08 62.0 84 36.9
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 4.5e-08 62.0 81 38.3
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 5.9e-08 61.6 79 39.2
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 5.9e-08 61.6 87 34.5
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 5.9e-08 61.6 102 32.4
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 5.9e-08 61.6 84 35.7
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 5.9e-08 61.6 82 36.6
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 7.7e-08 61.2 98 31.6
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 1.0e-07 60.8 93 31.2
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.0e-07 60.8 79 36.7
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 1.3e-07 60.5 79 36.7
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 1.7e-07 60.1 79 35.4
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.7e-07 60.1 79 36.7
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.7e-07 60.1 79 36.7
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 2.2e-07 59.7 79 34.2
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 2.2e-07 59.7 87 34.5
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 2.2e-07 59.7 79 35.4
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 2.2e-07 59.7 92 32.6
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 2.2e-07 59.7 79 36.7
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 2.2e-07 59.7 99 29.3
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 2.9e-07 59.3 79 36.7
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 2.9e-07 59.3 79 36.7
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 3.8e-07 58.9 79 36.7
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 5.0e-07 58.5 94 35.1
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 5.0e-07 58.5 79 36.7
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 6.5e-07 58.2 97 30.9
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 6.5e-07 58.2 86 33.7
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 8.5e-07 57.8 79 35.4
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 8.5e-07 57.8 87 32.2
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 1.1e-06 57.4 87 32.2
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 1.1e-06 57.4 82 34.1
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 1.5e-06 57.0 79 32.9
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.5e-06 57.0 77 36.4
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 1.9e-06 56.6 84 33.3
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 1.9e-06 56.6 98 30.6
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 2.5e-06 56.2 86 33.7
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 2.5e-06 56.2 97 30.9
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 2.5e-06 56.2 79 35.4
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 2.5e-06 56.2 87 33.3
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 2.5e-06 56.2 79 34.2
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 3.2e-06 55.8 79 34.2
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 3.2e-06 55.8 97 30.9
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 3.2e-06 55.8 84 34.5
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 4.2e-06 55.5 79 31.6
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 4.2e-06 55.5 87 32.2
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 5.5e-06 55.1 77 36.4
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 5.5e-06 55.1 77 35.1
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 5.5e-06 55.1 94 30.9
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 9.4e-06 54.3 84 33.3
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 9.4e-06 54.3 86 32.6


User provided reference genes

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