Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 4.1e-176 621.3 320 100.0
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 1.2e-74 284.3 343 53.4
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 2.1e-71 273.5 339 52.5
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 4.4e-53 212.6 330 46.4
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 6.3e-52 208.8 323 48.0
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 8.9e-46 188.3 311 44.7
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 2.7e-42 176.8 346 41.0
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.5e-40 171.0 312 44.2
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 5.6e-40 169.1 350 42.3
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 2.1e-39 167.2 343 39.4
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 4.0e-38 162.9 321 38.6
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 5.2e-38 162.5 316 44.0
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 1.7e-36 157.5 293 42.0
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.1e-35 154.8 311 41.5
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 1.4e-35 154.5 311 39.9
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 2.4e-35 153.7 310 42.9
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 6.0e-34 149.1 292 38.7
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 1.0e-33 148.3 327 39.8
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 8.6e-33 145.2 308 39.9
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 9.5e-32 141.7 348 37.6
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.6e-31 141.0 340 35.9
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.8e-31 140.2 336 37.8
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 3.1e-30 136.7 317 37.9
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 6.8e-30 135.6 340 37.1
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 6.8e-30 135.6 336 37.2
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.5e-29 132.1 335 36.4
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 8.3e-28 128.6 327 38.5
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 8.3e-28 128.6 336 37.2
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 1.4e-27 127.9 391 31.7
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 1.4e-27 127.9 291 34.7
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.9e-27 127.5 318 33.6
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 2.4e-27 127.1 318 36.5
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 1.2e-26 124.8 373 32.7
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 1.2e-26 124.8 342 35.4
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 2.1e-26 124.0 363 34.2
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 4.6e-26 122.9 393 30.8
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 6.0e-26 122.5 371 35.8
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 1.0e-25 121.7 257 36.2
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 1.3e-25 121.3 346 35.3
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 6.6e-25 119.0 336 36.3
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 1.5e-24 117.9 332 36.1
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.9e-24 117.5 332 36.4
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.3e-24 116.7 318 34.3
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 9.5e-24 115.2 328 34.5
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 9.5e-24 115.2 299 36.8
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.2e-23 114.8 318 34.0
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 1.6e-23 114.4 315 35.9
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 1.6e-23 114.4 307 36.2
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 2.1e-23 114.0 314 37.3
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 3.6e-23 113.2 362 33.4
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 4.7e-23 112.8 317 35.3
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 8.1e-23 112.1 340 32.4
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 1.4e-22 111.3 364 31.6
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 5.2e-22 109.4 318 37.1
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 1.5e-21 107.8 332 31.9
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 4.4e-21 106.3 313 35.1
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 4.4e-21 106.3 313 35.1
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 5.8e-21 105.9 195 47.2
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 5.8e-21 105.9 369 30.1
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 5.8e-21 105.9 369 30.1
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 7.6e-21 105.5 356 31.2
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 7.6e-21 105.5 326 35.3
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 7.6e-21 105.5 378 29.9
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 9.9e-21 105.1 377 33.2
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 9.9e-21 105.1 352 34.4
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.3e-20 104.8 341 32.6
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 2.2e-20 104.0 337 34.4
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 2.2e-20 104.0 353 34.3
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.9e-20 103.6 360 32.5
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 4.9e-20 102.8 345 30.7
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 1.1e-19 101.7 322 32.3
unitig_899.g14576 Utricularia gibba HOM05D005407 ORTHO05D006544 4.1e-19 99.8 287 35.5
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 7.1e-19 99.0 323 34.1
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 1.6e-18 97.8 360 30.6
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 3.5e-18 96.7 334 32.6
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 1.0e-17 95.1 323 33.4
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 1.7e-17 94.4 330 33.6
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.7e-17 94.4 366 28.7
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 5.1e-17 92.8 331 31.7
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 6.6e-17 92.4 351 33.3
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 3.3e-16 90.1 342 31.3
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 3.3e-16 90.1 334 31.7
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 3.3e-16 90.1 356 32.3
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 4.3e-16 89.7 373 27.9
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 4.3e-16 89.7 328 31.7
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 4.3e-16 89.7 330 33.6
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 1.2e-15 88.2 330 34.2
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 2.1e-15 87.4 160 39.4
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 2.8e-15 87.0 191 41.4
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 3.6e-15 86.7 314 32.2
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 6.2e-15 85.9 332 31.3
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 3.1e-14 83.6 393 30.3
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 4.0e-14 83.2 310 32.6
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 4.0e-14 83.2 280 32.9
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 2.6e-13 80.5 233 36.5
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.4e-13 80.1 268 31.7
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 4.4e-13 79.7 323 33.1
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 7.6e-13 79.0 391 28.4
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 9.9e-13 78.6 288 30.9
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 1.3e-12 78.2 312 28.8
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.7e-12 77.8 268 31.7
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.2e-12 77.4 269 31.6
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 2.2e-12 77.4 223 37.2
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 2.9e-12 77.0 263 33.1
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 4.9e-12 76.3 306 30.4
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 4.9e-12 76.3 346 29.8
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 4.9e-12 76.3 295 30.8
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 1.4e-11 74.7 297 30.0
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 1.9e-11 74.3 293 31.4
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 1.9e-11 74.3 299 30.1
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 2.7e-10 70.5 336 26.5
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 2.7e-10 70.5 336 26.5
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 2.7e-10 70.5 336 26.5
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 6.0e-10 69.3 301 28.9
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 7.8e-10 68.9 323 27.6
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 1.3e-09 68.2 364 24.5
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 1.3e-09 68.2 305 29.2
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 1.7e-09 67.8 290 30.7
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 6.6e-09 65.9 303 28.1
TAR625G0330 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.5e-08 64.7 214 29.4
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.9e-08 64.3 291 29.9
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.5e-08 63.9 71 52.1
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 3.3e-08 63.5 323 26.9
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 4.3e-08 63.2 336 26.2
CDE02G0512 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 5.6e-08 62.8 365 27.1
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 7.3e-08 62.4 214 32.2
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 7.3e-08 62.4 330 27.3
HanXRQChr12g0377191 Helianthus annuus HOM05D005407 ORTHO05D006544 7.3e-08 62.4 308 28.9
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 1.3e-07 61.6 323 26.6
Zm00001eb413970 Zea mays HOM05D013881 ORTHO05D016369 1.3e-07 61.6 195 31.8
Haze_22098 Corylus avellana HOM05D003020 ORTHO05D003226 1.6e-07 61.2 215 28.8
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 1.6e-07 61.2 324 30.6
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 2.1e-07 60.8 186 31.7
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 8.1e-07 58.9 340 25.3
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 3.1e-06 57.0 222 30.6
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 4.0e-06 56.6 295 27.5
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 6.9e-06 55.8 289 26.0
ClCG02G012410 Citrullus lanatus HOM05D005407 ORTHO05D006544 6.9e-06 55.8 293 29.0
Zm00001eb108270 Zea mays HOM05D013881 ORTHO05D016369 6.9e-06 55.8 158 30.4
Gohir.A08G023400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 9.0e-06 55.5 200 26.5


User provided reference genes

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