Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 3.2e-110 401.7 198 100.0
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 2.6e-35 152.9 144 59.7
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 3.7e-34 149.1 172 52.9
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 8.2e-34 147.9 173 54.9
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 5.0e-31 138.7 179 49.7
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.6e-29 133.7 181 48.6
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.7e-29 132.9 179 46.4
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 3.6e-29 132.5 166 48.2
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 6.1e-29 131.7 166 47.6
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 8.0e-29 131.3 164 47.0
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 8.0e-29 131.3 170 45.9
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 8.0e-29 131.3 138 55.1
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 1.0e-28 131.0 148 50.7
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 1.8e-28 130.2 143 48.3
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.3e-28 129.8 182 47.3
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 2.3e-28 129.8 178 46.1
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 3.0e-28 129.4 143 49.0
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 3.0e-28 129.4 166 47.0
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 3.0e-28 129.4 168 47.6
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 4.0e-28 129.0 146 54.8
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 6.7e-28 128.3 166 48.2
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 1.5e-27 127.1 159 50.3
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.0e-27 126.7 190 41.6
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.6e-27 126.3 171 44.4
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 7.5e-27 124.8 145 50.3
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 1.3e-26 124.0 158 44.9
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 6.3e-26 121.7 162 44.4
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 6.3e-26 121.7 171 42.7
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 8.2e-26 121.3 158 43.7
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 1.1e-25 120.9 163 43.6
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 3.1e-25 119.4 173 42.2
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 4.1e-25 119.0 149 45.0
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.0e-24 116.7 171 42.1
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 2.0e-24 116.7 171 42.1
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 2.0e-24 116.7 156 41.7
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 2.0e-24 116.7 163 44.8
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 4.5e-24 115.5 188 39.9
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 7.7e-24 114.8 175 39.4
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 1.0e-23 114.4 149 46.3
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 1.3e-23 114.0 176 39.2
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 1.7e-23 113.6 174 44.8
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.7e-23 113.6 189 39.7
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 2.2e-23 113.2 165 38.2
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 2.9e-23 112.8 177 44.1
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 2.9e-23 112.8 171 42.7
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 3.8e-23 112.5 169 40.8
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 6.5e-23 111.7 162 40.7
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 6.5e-23 111.7 164 39.6
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 6.5e-23 111.7 160 40.0
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 8.5e-23 111.3 157 45.2
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 8.5e-23 111.3 166 39.2
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 1.1e-22 110.9 137 44.5
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 1.5e-22 110.5 143 44.8
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 2.5e-22 109.8 148 43.2
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 5.5e-22 108.6 145 44.1
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 7.2e-22 108.2 168 39.3
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 1.2e-21 107.5 196 36.7
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 1.2e-21 107.5 143 41.3
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 1.2e-21 107.5 181 37.0
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 1.6e-21 107.1 148 43.9
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 1.6e-21 107.1 161 40.4
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 2.7e-21 106.3 168 38.7
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 2.7e-21 106.3 162 43.8
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 3.6e-21 105.9 152 46.1
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 4.7e-21 105.5 150 44.0
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 4.7e-21 105.5 150 44.0
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 6.1e-21 105.1 151 43.7
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 6.1e-21 105.1 151 43.7
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 8.0e-21 104.8 171 41.5
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 1.4e-20 104.0 150 43.3
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 1.4e-20 104.0 155 43.2
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 1.4e-20 104.0 166 41.6
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 1.8e-20 103.6 155 36.1
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 2.3e-20 103.2 195 36.9
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 3.0e-20 102.8 156 40.4
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 4.0e-20 102.4 196 36.7
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 5.2e-20 102.1 150 41.3
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 5.2e-20 102.1 182 37.9
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 5.2e-20 102.1 158 38.0
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 6.8e-20 101.7 150 41.3
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 1.5e-19 100.5 181 39.2
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 2.0e-19 100.1 145 44.1
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 2.6e-19 99.8 147 40.8
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 3.4e-19 99.4 156 35.9
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 4.4e-19 99.0 185 36.8
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 5.7e-19 98.6 203 34.5
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 1.3e-18 97.4 175 37.1
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 2.2e-18 96.7 146 39.0
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 3.7e-18 95.9 189 37.0
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 4.8e-18 95.5 144 38.2
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 4.8e-18 95.5 208 33.7
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 8.3e-18 94.7 172 37.2
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 1.1e-17 94.4 140 42.1
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 1.4e-17 94.0 164 39.0
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 1.4e-17 94.0 175 33.7
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 2.4e-17 93.2 174 35.1
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.4e-17 93.2 153 38.6
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.4e-17 93.2 187 36.4
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 3.1e-17 92.8 133 43.6
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 4.1e-17 92.4 160 38.1
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 5.4e-17 92.0 177 37.9
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.2e-16 90.9 140 37.9
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 2.0e-16 90.1 140 37.9
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 2.0e-16 90.1 224 31.7
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 3.5e-16 89.4 206 32.0
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 4.5e-16 89.0 198 32.3
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 5.9e-16 88.6 153 39.9
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 1.7e-15 87.0 180 36.1
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 2.2e-15 86.7 140 39.3
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 6.5e-15 85.1 158 35.4
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 6.5e-15 85.1 142 35.9
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 1.9e-14 83.6 129 38.8
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 3.2e-14 82.8 149 35.6
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 5.5e-14 82.0 200 33.5
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 1.6e-13 80.5 204 31.9
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 8.0e-13 78.2 57 59.6
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 1.8e-12 77.0 122 36.9
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 3.0e-12 76.3 133 36.1
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 4.0e-12 75.9 98 40.8
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 4.0e-12 75.9 98 40.8
HPP92_008039 Vanilla planifolia HOM05D005169 ORTHO05D006436 6.8e-12 75.1 157 37.6
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 1.2e-11 74.3 175 33.1
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 1.2e-11 74.3 139 36.0
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 2.0e-11 73.6 149 32.2
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 2.6e-11 73.2 82 41.5
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 7.5e-11 71.6 175 29.1
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 1.7e-10 70.5 208 27.4
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 2.2e-10 70.1 156 37.2
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 3.7e-10 69.3 134 37.3
SEGI_21704 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 9.2e-09 64.7 126 34.9
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 1.6e-08 63.9 134 32.1
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 2.7e-08 63.2 125 36.0
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 1.5e-06 57.4 97 40.2
SEGI_22807 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 1.5e-06 57.4 131 29.0
SEGI_19138 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 1.9e-06 57.0 121 31.4


User provided reference genes

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