Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 1.0e-154 550.1 277 100.0
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 2.9e-117 425.6 241 85.1
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 2.0e-115 419.5 278 76.3
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 1.9e-108 396.4 241 78.0
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 3.2e-108 395.6 277 72.9
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 4.1e-108 395.2 241 78.0
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.2e-107 393.7 235 78.3
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 3.5e-107 392.1 229 80.8
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 5.1e-106 388.3 248 75.4
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 2.5e-105 386.0 252 74.2
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 2.5e-105 386.0 248 74.2
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 1.6e-104 383.3 264 70.8
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 2.1e-104 382.9 270 70.4
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 4.7e-104 381.7 289 69.2
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.8e-103 379.8 239 76.2
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 3.1e-103 379.0 245 74.7
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 6.8e-103 377.9 272 71.3
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 1.2e-102 377.1 280 67.9
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.0e-102 376.3 277 70.0
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 4.4e-102 375.2 277 69.0
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 5.8e-102 374.8 279 69.5
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 5.8e-102 374.8 253 72.7
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 5.8e-102 374.8 253 72.7
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 7.6e-102 374.4 221 80.1
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.3e-101 373.6 278 69.1
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 2.9e-101 372.5 297 66.3
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 3.7e-101 372.1 277 70.0
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 4.9e-101 371.7 293 65.9
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 6.4e-101 371.3 237 75.1
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 8.4e-101 370.9 247 72.5
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 8.4e-101 370.9 228 77.2
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 1.4e-100 370.2 250 72.0
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.4e-100 370.2 281 67.6
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 1.9e-100 369.8 282 68.4
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 2.4e-100 369.4 219 78.1
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 9.2e-100 367.5 278 66.2
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 1.6e-99 366.7 277 69.0
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 2.1e-99 366.3 284 66.9
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 2.1e-99 366.3 274 66.1
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 4.6e-99 365.2 282 66.3
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 1.0e-98 364.0 282 67.0
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.3e-98 362.8 277 67.9
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 2.3e-98 362.8 280 67.1
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 3.0e-98 362.5 284 65.8
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 6.6e-98 361.3 220 76.4
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 8.6e-98 360.9 278 68.0
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 8.6e-98 360.9 288 64.9
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.5e-97 360.1 281 65.8
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.9e-97 359.8 281 65.8
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.9e-97 359.8 287 63.8
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 2.5e-97 359.4 232 72.8
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 2.5e-97 359.4 229 74.7
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 4.3e-97 358.6 221 76.5
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 4.3e-97 358.6 268 67.2
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 7.3e-97 357.8 288 64.2
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 2.1e-96 356.3 274 65.0
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 3.6e-96 355.5 279 65.9
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 4.7e-96 355.1 293 64.8
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 1.1e-95 354.0 228 71.1
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 2.4e-95 352.8 259 68.0
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 4.0e-95 352.1 291 63.2
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 6.8e-95 351.3 282 64.2
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 6.8e-95 351.3 226 73.5
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 6.8e-95 351.3 274 67.9
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 8.9e-95 350.9 277 66.1
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 8.9e-95 350.9 239 69.9
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 2.0e-94 349.7 246 69.5
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 2.6e-94 349.4 254 68.1
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 1.3e-93 347.1 259 67.2
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 2.2e-93 346.3 228 71.9
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 2.9e-93 345.9 221 71.9
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 2.9e-93 345.9 248 70.2
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 8.4e-93 344.4 269 64.3
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 8.4e-93 344.4 280 65.4
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 1.1e-92 344.0 228 71.9
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 1.9e-92 343.2 246 68.3
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 5.4e-92 341.7 237 70.0
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 3.5e-91 339.0 277 63.9
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 5.1e-90 335.1 299 62.2
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 1.1e-89 334.0 278 62.6
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 3.3e-89 332.4 283 60.8
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 1.6e-88 330.1 286 60.1
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 8.1e-88 327.8 288 60.1
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 8.1e-88 327.8 288 60.1
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 1.4e-87 327.0 277 60.3
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 3.1e-87 325.9 287 59.2
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 2.2e-85 319.7 300 57.0
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 2.9e-85 319.3 200 74.0
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 4.2e-84 315.5 181 79.6
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 4.2e-84 315.5 239 69.5
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 5.4e-84 315.1 272 61.8
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 3.0e-82 309.3 226 61.9
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 1.9e-81 306.6 225 61.8
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 1.3e-80 303.9 263 58.2
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.3e-80 303.9 221 63.8
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 2.1e-80 303.1 253 62.5
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 2.4e-79 299.7 223 67.7
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 9.0e-79 297.7 183 76.0
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 1.2e-78 297.4 281 55.5
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 2.9e-77 292.7 274 58.0
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 2.9e-77 292.7 221 65.2
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 3.8e-77 292.4 254 59.8
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 8.4e-77 291.2 274 58.0
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 8.4e-77 291.2 183 75.4
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 1.1e-76 290.8 259 57.9
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 3.2e-76 289.3 294 54.8
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 4.6e-75 285.4 269 56.1
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 1.3e-74 283.9 268 56.3
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 8.7e-74 281.2 174 76.4
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 7.4e-73 278.1 271 52.8
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 2.8e-72 276.2 179 73.7
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 1.4e-68 263.8 155 78.7
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 6.9e-63 245.0 293 52.6
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 3.4e-62 242.7 225 54.2
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 1.4e-60 237.3 192 60.4
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 1.5e-54 217.2 265 42.6
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 6.3e-48 195.3 308 38.0
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 1.2e-46 191.0 116 80.2
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 2.0e-46 190.3 268 40.7
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 2.2e-45 186.8 266 45.1
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 1.2e-43 181.0 121 67.8
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 1.4e-42 177.6 138 63.0
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 2.8e-40 169.9 113 73.5
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 3.7e-40 169.5 127 63.8
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 4.0e-34 149.4 116 60.3
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 4.2e-28 129.4 72 79.2
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 7.2e-28 128.6 77 81.8
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.6e-27 127.5 283 30.7
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 8.3e-24 115.2 184 43.5
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 8.3e-24 115.2 77 70.1
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 1.6e-22 110.9 81 65.4
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 4.7e-19 99.4 76 61.8
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 5.4e-15 85.9 56 67.9
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 7.5e-09 65.5 82 48.8


User provided reference genes

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