Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 1.8e-173 612.5 303 100.0
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 2.1e-142 509.2 298 81.5
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 4.1e-125 451.8 328 70.7
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 9.1e-125 450.7 303 75.6
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 1.5e-124 449.9 295 74.6
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 3.4e-124 448.7 345 68.4
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 1.0e-123 447.2 324 70.1
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 1.3e-123 446.8 293 75.1
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 1.7e-123 446.4 293 75.1
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 3.8e-123 445.3 293 75.8
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 2.1e-121 439.5 288 76.0
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 2.3e-120 436.0 295 73.2
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 2.0e-119 433.0 284 76.1
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 1.3e-118 430.3 290 74.5
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 4.8e-118 428.3 279 73.1
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 1.4e-117 426.8 290 73.4
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 5.3e-117 424.9 285 74.7
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 7.7e-116 421.0 263 77.9
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 6.5e-115 417.9 287 72.1
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 1.9e-114 416.4 281 71.5
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 7.2e-114 414.5 282 74.1
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 9.4e-114 414.1 257 77.4
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 2.1e-113 412.9 301 69.4
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 4.7e-113 411.8 285 71.2
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 2.3e-112 409.5 254 75.6
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 6.7e-112 407.9 266 72.9
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 1.5e-111 406.8 265 74.0
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 2.0e-111 406.4 271 72.7
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 2.6e-111 406.0 300 69.7
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 9.7e-111 404.1 294 67.3
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 1.3e-110 403.7 274 74.5
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 4.8e-110 401.7 245 78.4
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 6.3e-110 401.4 295 67.1
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 1.8e-109 399.8 281 70.1
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 1.8e-109 399.8 319 66.8
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 2.4e-109 399.4 284 68.3
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 2.4e-109 399.4 295 69.8
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 3.1e-109 399.1 279 69.9
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 4.5e-108 395.2 288 67.0
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 1.7e-107 393.3 253 73.1
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 2.2e-107 392.9 291 68.7
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 2.2e-107 392.9 259 73.0
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 2.9e-107 392.5 292 69.9
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 3.8e-107 392.1 256 73.0
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 6.5e-107 391.3 295 68.1
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 6.5e-107 391.3 297 65.3
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 8.5e-107 391.0 279 68.5
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 1.1e-106 390.6 280 67.5
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 1.5e-106 390.2 297 67.3
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 1.9e-106 389.8 283 67.8
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 1.9e-106 389.8 291 68.4
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 1.9e-106 389.8 289 69.2
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 2.5e-106 389.4 259 72.6
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 2.5e-106 389.4 289 65.7
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 7.2e-106 387.9 305 65.9
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 9.4e-106 387.5 283 67.5
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 2.7e-105 386.0 283 67.1
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 3.6e-105 385.6 283 67.1
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 3.6e-105 385.6 283 67.1
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 3.6e-105 385.6 262 71.0
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 1.0e-104 384.0 295 64.4
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 1.0e-104 384.0 305 65.6
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 6.8e-104 381.3 293 66.9
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 1.2e-103 380.6 270 68.5
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 1.5e-103 380.2 281 66.2
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 7.5e-103 377.9 287 65.9
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 6.3e-102 374.8 272 66.5
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 8.3e-102 374.4 271 69.0
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 5.4e-101 371.7 268 69.4
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 1.6e-100 370.2 250 70.0
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 2.3e-99 366.3 295 62.4
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 5.0e-99 365.2 295 62.0
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 8.6e-99 364.4 259 68.0
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 2.5e-98 362.8 285 63.5
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 2.5e-98 362.8 256 68.4
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 3.4e-95 352.4 304 60.5
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 4.4e-95 352.1 312 59.3
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 8.3e-94 347.8 284 60.6
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 1.6e-92 343.6 266 66.2
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 5.9e-92 341.7 269 62.8
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 2.5e-90 336.3 231 69.3
CSS0009464 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 3.3e-90 335.9 217 78.3
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 1.6e-89 333.6 248 68.5
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 4.0e-88 328.9 322 54.3
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 2.6e-87 326.2 252 61.9
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 1.8e-85 320.1 255 59.2
Sed0022734 Sechium edule HOM05D006526 ORTHO05D008496 1.9e-82 310.1 198 73.7
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 2.8e-81 306.2 299 57.2
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 1.7e-78 297.0 287 56.4
PGSC0003DMG400020254 Solanum tuberosum HOM05D006526 ORTHO05D008496 4.1e-77 292.4 168 81.5
SMO137G0097 Selaginella moellendorffii HOM05D006526 ORTHO05D008496 1.6e-76 290.4 261 55.2
TPR.G14866 Trifolium pratense HOM05D006526 ORTHO05D008496 2.0e-76 290.0 287 53.7
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 6.0e-76 288.5 231 66.7
DCAR_000965 Daucus carota HOM05D006526 ORTHO05D008496 1.1e-74 284.3 187 73.8
TAR629G1757 Trochodendron aralioides HOM05D006526 ORTHO05D008496 9.5e-74 281.2 209 70.3
VMungo1383G1669 Vigna mungo HOM05D006526 ORTHO05D008496 9.5e-74 281.2 197 70.1
Sc16g0003120 Simmondsia chinensis HOM05D006526 ORTHO05D008496 4.0e-72 275.8 212 66.0
QL02p071425 Quercus lobata HOM05D006526 ORTHO05D008496 2.6e-71 273.1 167 76.0
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 2.1e-68 263.5 291 54.0
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 7.3e-66 255.0 212 61.3
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 1.2e-65 254.2 220 61.8
Glyma.16G056500 Glycine max HOM05D006526 ORTHO05D008496 3.0e-51 206.5 154 67.5
BcaB05g22970 Brassica carinata HOM05D006526 ORTHO05D008496 6.6e-51 205.3 136 69.1
Cre01.g015950 Chlamydomonas reinhardtii HOM05D006526 ORTHO05D008496 6.6e-51 205.3 239 46.9
Medtr7g034590 Medicago truncatula HOM05D006526 ORTHO05D008496 1.5e-47 194.1 133 71.4
ECA236G2817 Erigeron canadensis HOM05D006526 ORTHO05D008496 1.1e-40 171.4 141 60.3
MCO14G032 Micromonas commoda HOM05D006526 ORTHO05D008496 2.6e-39 166.8 217 38.7
QL02p071428 Quercus lobata HOM05D006526 ORTHO05D008496 1.0e-27 128.3 98 69.4
CSS0005086 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 5.1e-27 125.9 96 70.8
CDE05G0752 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 8.7e-27 125.2 130 53.8
Glyma.16G056450 Glycine max HOM05D006526 ORTHO05D008496 3.7e-25 119.8 94 60.6
FAN02G2201 Fragaria x ananassa HOM05D002323 ORTHO05D002470 1.8e-24 117.5 142 45.8
Medtr6g045607 Medicago truncatula HOM05D006526 ORTHO05D008496 3.4e-23 113.2 73 69.9
CDE05G3548 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 1.4e-21 107.8 73 71.2
EL10Ac8g19274 Beta vulgaris HOM05D006526 ORTHO05D008496 9.1e-16 88.6 68 64.7
BraA06t24956Z Brassica rapa HOM05D006526 ORTHO05D024464 2.2e-14 84.0 113 46.0
Ca_12964_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 2.2e-14 84.0 69 63.8
Medtr6g045617 Medicago truncatula HOM05D006526 ORTHO05D008496 6.5e-14 82.4 73 58.9
BcaB05g22969 Brassica carinata HOM05D006526 ORTHO05D008496 1.4e-13 81.3 55 72.7
CSS0022358 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 6.7e-11 72.4 47 70.2
C08p24000 Brassica napus HOM05D006526 ORTHO05D024464 4.4e-10 69.7 75 53.3
CSS0047032 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 4.4e-10 69.7 47 66.0
BolC8t50022H Brassica oleracea HOM05D006526 ORTHO05D024464 6.3e-09 65.9 52 63.5
BcaC07g39377 Brassica carinata HOM05D006526 ORTHO05D024464 8.2e-09 65.5 55 61.8
CDE04G1482 Ceratophyllum demersum HOM05D006526 ORTHO05D003215 2.4e-08 63.9 76 47.4
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 2.4e-08 63.9 247 29.1
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 9.1e-08 62.0 219 27.9
A06p18730 Brassica napus HOM05D006526 ORTHO05D024464 2.0e-07 60.8 94 43.6
Migut.D02219 Erythranthe guttata HOM05D004609 ORTHO05D005537 4.5e-07 59.7 286 26.9
AagrBONN_evm.TU.Sc2ySwM_368.1656 Anthoceros agrestis HOM05D004609 ORTHO05D005537 7.7e-07 58.9 199 26.6
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 1.7e-06 57.8 174 28.7
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 1.7e-06 57.8 235 26.4
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 1.7e-06 57.8 219 26.9
QL06p007766 Quercus lobata HOM05D006526 ORTHO05D008496 1.7e-06 57.8 41 65.9
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 2.2e-06 57.4 284 26.4
MSTRG.17807 Avicennia marina HOM05D004609 ORTHO05D005537 2.9e-06 57.0 219 26.5
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 2.9e-06 57.0 221 28.1
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 2.9e-06 57.0 147 27.2
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 3.8e-06 56.6 235 26.4
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 3.8e-06 56.6 237 27.4
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 3.8e-06 56.6 219 26.9
VMungo1127G1456 Vigna mungo HOM05D004609 ORTHO05D005537 6.5e-06 55.8 197 25.9
Phvul.011G078800 Phaseolus vulgaris HOM05D004609 ORTHO05D005537 8.5e-06 55.5 215 27.0
Hund10347 Selenicereus undatus HOM05D004609 ORTHO05D005537 8.5e-06 55.5 220 26.8


User provided reference genes

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