Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 4408.6 2203 100.0
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 3223.7 2221 74.0
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 3034.2 2221 70.4
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2992.6 2250 68.5
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2815.0 2236 65.3
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2713.7 2240 63.2
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2697.2 2236 62.9
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2684.1 2254 62.3
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2660.2 2239 62.3
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2655.9 2236 61.9
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2640.5 2236 61.7
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2629.0 2230 61.5
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2623.2 2233 61.8
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2622.4 2234 62.2
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2609.3 2247 60.7
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2608.6 2234 60.7
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2604.7 2228 61.4
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2603.9 2235 60.6
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2592.4 2226 61.3
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2547.7 2237 59.9
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2535.8 2243 59.8
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2535.8 2239 59.9
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2529.2 2237 58.9
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2523.8 2240 59.4
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2522.7 2242 59.1
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2522.7 2244 59.9
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2521.5 2241 59.0
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2521.5 2246 59.4
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2516.1 2239 59.6
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2516.1 2242 60.1
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2490.7 2248 58.9
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2488.0 2244 58.8
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2487.2 2238 59.3
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2485.7 2228 58.4
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2461.8 2247 58.1
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2448.7 2223 58.9
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2442.9 2231 57.9
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2429.4 2234 57.3
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2429.1 2246 58.1
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2424.4 2229 58.0
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2421.4 2243 58.1
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2407.9 2242 57.9
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2396.3 2229 57.1
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2394.8 2233 57.9
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2389.8 2234 57.0
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2388.6 2239 57.0
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2384.8 2239 56.9
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2379.0 2225 57.8
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2374.0 2243 56.8
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2362.0 2236 56.7
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2358.2 2245 56.2
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2355.5 2237 56.9
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2353.2 2230 57.2
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2351.6 2238 56.5
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2344.7 2248 56.0
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2338.5 2245 56.0
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2332.8 2246 55.8
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2332.8 2235 56.6
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2321.2 2227 56.4
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2317.0 2240 56.4
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2315.0 2244 55.3
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2307.3 2263 55.2
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2306.9 2241 55.9
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2305.8 2243 56.0
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2304.6 2256 55.9
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2277.3 2246 56.5
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2276.5 2228 54.8
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2225.3 2231 54.2
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2225.3 2231 54.2
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2220.3 2236 54.0
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2216.8 2236 54.2
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2214.9 2266 53.5
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2211.8 2224 54.0
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2211.8 2224 54.0
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2206.8 2234 54.5
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2199.1 2236 54.2
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2189.1 2332 52.6
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2187.9 2232 54.2
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2123.6 1825 60.2
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2108.2 2231 52.4
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2103.6 1822 60.3
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2084.3 1900 57.3
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2082.8 1821 60.1
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2073.1 2056 55.6
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2050.0 2318 50.3
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2030.8 2256 50.3
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 1959.9 1724 60.0
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 1958.7 2242 49.6
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1857.0 2208 48.6
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1746.9 2180 47.1
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1731.8 1426 64.0
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1709.1 2404 43.0
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1548.5 1717 51.6
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1507.3 1380 58.4
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1446.4 2366 39.4
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1365.9 2339 38.0
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1301.2 2271 36.9
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1208.7 1124 58.0
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1185.2 1025 60.6
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1146.7 1206 52.7
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1114.8 1069 56.2
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1107.4 947 61.4
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 1.5e-309 1067.4 1424 44.9
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 1.8e-275 954.1 786 65.0
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 3.6e-263 913.3 1017 52.0
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 1.3e-249 868.2 2185 31.4
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 1.5e-213 748.4 870 47.2
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.9e-204 717.6 1345 36.9
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 9.0e-198 696.0 724 55.0
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 7.5e-160 570.1 1008 37.8
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 5.9e-149 533.9 2469 24.9
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 2.3e-121 442.2 446 49.6
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 1.5e-99 369.8 379 54.4
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 4.2e-94 351.7 761 35.0
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 7.6e-80 304.3 323 52.9
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 9.7e-75 287.3 290 57.9
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 6.5e-71 274.6 311 49.8
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 1.1e-62 247.3 228 57.5
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 1.8e-60 240.0 323 45.8
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 4.4e-51 208.8 246 49.6
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 2.2e-50 206.5 173 63.6
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 2.7e-45 189.5 278 42.8
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 4.7e-37 162.2 140 61.4
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 1.3e-34 154.1 94 79.8
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.7e-34 153.7 480 27.7
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.8e-34 152.9 217 42.4
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 3.8e-31 142.5 144 55.6
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 4.7e-29 135.6 123 56.1
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 4.4e-27 129.0 249 34.9
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 1.0e-20 107.8 109 55.0
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 1.8e-20 107.1 100 58.0
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 3.0e-15 89.7 714 21.7
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 7.3e-14 85.1 108 39.8


User provided reference genes

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