Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3166 Avicennia marina HOM05D006084 ORTHO05D007449 8.3e-64 246.9 126 100.0
Migut.H00108 Erythranthe guttata HOM05D006084 ORTHO05D007449 1.4e-50 203.0 124 81.5
SGA_v2.0_scaffold2848G54225 Striga asiatica HOM05D006084 ORTHO05D007449 2.6e-49 198.7 124 81.5
Oeu004718.1 Olea europaea HOM05D006084 ORTHO05D007449 8.3e-48 193.7 122 77.0
unitig_746.g26552 Utricularia gibba HOM05D006084 ORTHO05D007449 7.8e-46 187.2 124 72.6
TAR371G1194 Trochodendron aralioides HOM05D006084 ORTHO05D007449 1.5e-44 183.0 118 74.6
Actinidia35746 Actinidia chinensis HOM05D006084 ORTHO05D007449 2.8e-43 178.7 119 72.3
CAN.G206.22 Capsicum annuum HOM05D006084 ORTHO05D007449 3.6e-43 178.3 113 74.3
Cc07_g02120 Coffea canephora HOM05D006084 ORTHO05D007449 1.1e-42 176.8 119 70.6
QL02p076043 Quercus lobata HOM05D006084 ORTHO05D007449 1.1e-42 176.8 120 69.2
QL02p076078 Quercus lobata HOM05D006084 ORTHO05D007449 1.1e-42 176.8 120 69.2
Rhsim08G0053800 Rhododendron simsii HOM05D006084 ORTHO05D007449 1.1e-42 176.8 120 71.7
Dinv33481 Davidia involucrata HOM05D006084 ORTHO05D007449 3.1e-42 175.3 113 74.3
Cfa007418 Carpinus fangiana HOM05D006084 ORTHO05D007449 4.0e-42 174.9 120 70.0
CiPaw.03G039200 Carya illinoinensis HOM05D006084 ORTHO05D007449 5.2e-42 174.5 118 70.3
Aqoxy3G02941 Aquilegia oxysepala HOM05D006084 ORTHO05D007449 6.8e-42 174.1 117 70.9
Haze_14684 Corylus avellana HOM05D006084 ORTHO05D007449 8.9e-42 173.7 120 70.0
Hma1.2p1_0846F.1_g227700 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 1.2e-41 173.3 120 70.8
Manes.17G116000 Manihot esculenta HOM05D006084 ORTHO05D007449 1.2e-41 173.3 120 71.7
Atru.chr6.2220 Acer truncatum HOM05D006084 ORTHO05D007449 1.5e-41 172.9 120 70.0
CDE08G0643 Ceratophyllum demersum HOM05D006084 ORTHO05D007449 2.6e-41 172.2 118 69.5
Ca_16579_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 2.6e-41 172.2 116 71.6
PGSC0003DMG400000490 Solanum tuberosum HOM05D006084 ORTHO05D007449 2.6e-41 172.2 112 74.1
CSS0000489 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 4.4e-41 171.4 120 70.0
CSS0035017 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 4.4e-41 171.4 120 70.0
Lalb_Chr10g0093921 Lupinus albus HOM05D006084 ORTHO05D007449 7.5e-41 170.6 115 73.0
Prupe.3G286100 Prunus persica HOM05D006084 ORTHO05D007449 9.8e-41 170.2 112 71.4
Sopen02g031550 Solanum pennellii HOM05D006084 ORTHO05D007449 9.8e-41 170.2 112 73.2
Medtr3g088470 Medicago truncatula HOM05D006084 ORTHO05D007449 2.2e-40 169.1 116 69.0
Eucgr.I01785 Eucalyptus grandis HOM05D006084 ORTHO05D007449 3.7e-40 168.3 120 67.5
Thecc.04G011100 Theobroma cacao HOM05D006084 ORTHO05D007449 3.7e-40 168.3 120 67.5
PSO782G1469 Papaver somniferum HOM05D006084 ORTHO05D007449 4.9e-40 167.9 113 69.9
Potri.001G349500 Populus trichocarpa HOM05D006084 ORTHO05D007449 4.9e-40 167.9 119 68.1
TPR.G13476 Trifolium pratense HOM05D006084 ORTHO05D007449 4.9e-40 167.9 116 69.0
ATR0730G058 Amborella trichopoda HOM05D006084 ORTHO05D007449 6.4e-40 167.5 119 66.4
Hund02345 Selenicereus undatus HOM05D006084 ORTHO05D007449 8.3e-40 167.2 120 67.5
ATR1096G027 Amborella trichopoda HOM05D006084 ORTHO05D007449 1.1e-39 166.8 119 65.5
Sc03g0007970 Simmondsia chinensis HOM05D006084 ORTHO05D007449 1.9e-39 166.0 113 69.0
Gohir.A07G221200 Gossypium hirsutum HOM05D006084 ORTHO05D007449 3.2e-39 165.2 120 65.8
Glyma.04G247000 Glycine max HOM05D006084 ORTHO05D007449 4.1e-39 164.9 119 66.4
Lj1g0023236 Lotus japonicus HOM05D006084 ORTHO05D007449 4.1e-39 164.9 114 68.4
A02p02680 Brassica napus HOM05D006084 ORTHO05D007449 7.1e-39 164.1 120 66.7
BraA02t05237Z Brassica rapa HOM05D006084 ORTHO05D007449 7.1e-39 164.1 120 66.7
PSO210G7688 Papaver somniferum HOM05D006084 ORTHO05D007449 9.2e-39 163.7 117 65.0
arahy.Tifrunner.gnm1.ann1.2LS7ZQ Arachis hypogaea HOM05D006084 ORTHO05D007449 1.2e-38 163.3 115 69.6
PSO566G0352 Papaver somniferum HOM05D006084 ORTHO05D007449 1.2e-38 163.3 113 69.0
arahy.Tifrunner.gnm1.ann1.DMWP0X Arachis hypogaea HOM05D006084 ORTHO05D007449 1.6e-38 162.9 113 70.8
ECA238G3069 Erigeron canadensis HOM05D006084 ORTHO05D007449 2.1e-38 162.5 119 66.4
BcaB01g05101 Brassica carinata HOM05D006084 ORTHO05D007449 2.7e-38 162.2 120 65.0
C03p07740 Brassica napus HOM05D006084 ORTHO05D007449 2.7e-38 162.2 120 65.0
BolC3t13274H Brassica oleracea HOM05D006084 ORTHO05D007449 2.7e-38 162.2 120 65.0
Gohir.D07G227900 Gossypium hirsutum HOM05D006084 ORTHO05D007449 2.7e-38 162.2 120 65.8
MD17G1033600 Malus domestica HOM05D006084 ORTHO05D007449 2.7e-38 162.2 114 68.4
A03p06720 Brassica napus HOM05D006084 ORTHO05D007449 3.5e-38 161.8 120 65.0
Glyma.06G115700 Glycine max HOM05D006084 ORTHO05D007449 3.5e-38 161.8 119 63.9
HanXRQChr07g0198791 Helianthus annuus HOM05D006084 ORTHO05D007449 3.5e-38 161.8 117 66.7
Phvul.009G127800 Phaseolus vulgaris HOM05D006084 ORTHO05D007449 3.5e-38 161.8 119 65.5
PGR142G2538 Punica granatum HOM05D006084 ORTHO05D007449 3.5e-38 161.8 106 72.6
Sed0018290 Sechium edule HOM05D006084 ORTHO05D007449 3.5e-38 161.8 120 63.3
arahy.Tifrunner.gnm1.ann1.48HX9C Arachis hypogaea HOM05D006084 ORTHO05D007449 4.6e-38 161.4 115 68.7
RcHm_v2.0_Chr2g0172221 Rosa chinensis HOM05D006084 ORTHO05D007449 4.6e-38 161.4 116 66.4
CANSAT64G0964 Cannabis sativa HOM05D006084 ORTHO05D007449 6.0e-38 161.0 117 64.1
Thhalv10015025m.g Eutrema salsugineum HOM05D006084 ORTHO05D007449 6.0e-38 161.0 120 65.0
Sp6g29330 Schrenkiella parvula HOM05D006084 ORTHO05D007449 6.0e-38 161.0 120 65.0
Carub.0006s1288 Capsella rubella HOM05D006084 ORTHO05D007449 7.8e-38 160.6 120 65.0
HPP92_022049 Vanilla planifolia HOM05D006084 ORTHO05D007449 7.8e-38 160.6 115 66.1
AL6G25480 Arabidopsis lyrata HOM05D006084 ORTHO05D007449 1.0e-37 160.2 120 65.0
BraA03t10005Z Brassica rapa HOM05D006084 ORTHO05D007449 1.0e-37 160.2 118 65.3
HanXRQChr14g0450361 Helianthus annuus HOM05D006084 ORTHO05D007449 1.0e-37 160.2 119 64.7
AT5G14710 Arabidopsis thaliana HOM05D006084 ORTHO05D007449 2.3e-37 159.1 120 64.2
CARHR198600 Cardamine hirsuta HOM05D006084 ORTHO05D007449 2.3e-37 159.1 120 64.2
COL.COLO4_28991 Corchorus olitorius HOM05D006084 ORTHO05D007449 3.0e-37 158.7 137 59.9
GSVIVG01032459001 Vitis vinifera HOM05D006084 ORTHO05D007449 3.0e-37 158.7 114 68.4
BcaC03g13452 Brassica carinata HOM05D006084 ORTHO05D007449 3.9e-37 158.3 120 64.2
C02p07250 Brassica napus HOM05D006084 ORTHO05D007449 3.9e-37 158.3 120 64.2
BolC2t06657H Brassica oleracea HOM05D006084 ORTHO05D007449 3.9e-37 158.3 120 64.2
CsaV3_5G027340 Cucumis sativus L. HOM05D006084 ORTHO05D007449 3.9e-37 158.3 120 61.7
TWI12G0619 Tripterygium wilfordii HOM05D006084 ORTHO05D007449 3.9e-37 158.3 115 67.8
BcaC04g19017 Brassica carinata HOM05D006084 ORTHO05D007449 6.6e-37 157.5 118 65.3
Peaxi162Scf00129g01228 Petunia axillaris HOM05D006084 ORTHO05D007449 8.6e-37 157.1 100 76.0
THA.LOC104821076 Tarenaya hassleriana HOM05D006084 ORTHO05D007449 1.5e-36 156.4 120 63.3
FvH4_6g50830 Fragaria vesca HOM05D006084 ORTHO05D007449 1.9e-36 156.0 114 65.8
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.9e-36 156.0 114 65.8
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.9e-36 156.0 114 65.8
BcaNung03101 Brassica carinata HOM05D006084 ORTHO05D007449 2.5e-36 155.6 111 67.6
MELO3C005689.2 Cucumis melo HOM05D006084 ORTHO05D007449 4.3e-36 154.8 120 60.8
FAN14G2625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 5.6e-36 154.5 114 64.9
Zm00001eb048120 Zea mays HOM05D006084 ORTHO05D007449 1.2e-35 153.3 117 61.5
Os10g0395500 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 1.6e-35 152.9 113 63.7
Hma1.2p1_0056F.1_g031653 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 2.8e-35 152.1 101 73.3
Hma1.2p1_1415F.1_g281960 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 6.2e-35 151.0 120 63.3
Aa31LG11G14750 Aethionema arabicum HOM05D006084 ORTHO05D007449 8.1e-35 150.6 120 61.7
C09p62430 Brassica napus HOM05D006084 ORTHO05D007449 1.4e-34 149.8 127 59.1
arahy.Tifrunner.gnm1.ann1.GQ5XJ3 Arachis hypogaea HOM05D006084 ORTHO05D007449 4.0e-34 148.3 130 58.5
MBI19_g17406_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 8.9e-34 147.1 128 59.4
Gorai.001G262800 Gossypium raimondii HOM05D006084 ORTHO05D007449 2.0e-33 146.0 108 64.8
BolC9t59081H Brassica oleracea HOM05D006084 ORTHO05D007449 4.4e-33 144.8 127 58.3
ClCG00G003490 Citrullus lanatus HOM05D006084 ORTHO05D007449 4.4e-33 144.8 142 52.1
ClCG09G019010 Citrullus lanatus HOM05D006084 ORTHO05D007449 4.4e-33 144.8 142 52.1
MBI19_g07248_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 2.9e-32 142.1 130 58.5
EL10Ac3g07214 Beta vulgaris HOM05D006084 ORTHO05D007449 1.1e-31 140.2 108 64.8
Nn3g16859 Nelumbo nucifera HOM05D006084 ORTHO05D007449 1.9e-31 139.4 113 64.6
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 3.2e-31 138.7 101 66.3
SHI16396 Sapria himalayana HOM05D006084 ORTHO05D007449 2.1e-30 136.0 103 63.1
Lsat_1_v5_gn_2_91880 Lactuca sativa HOM05D006084 ORTHO05D007449 3.0e-29 132.1 119 57.1
Mapoly0005s0179 Marchantia polymorpha HOM05D006084 ORTHO05D007449 5.1e-29 131.3 112 58.0
Duzib264G1216 Durio zibethinus HOM05D006084 ORTHO05D007449 6.6e-29 131.0 89 70.8
SMO367G0706 Selaginella moellendorffii HOM05D006084 ORTHO05D007449 1.5e-28 129.8 103 60.2
Pp3c26_1260 Physcomitrium patens HOM05D006084 ORTHO05D007449 1.6e-27 126.3 123 49.6
Sabra16G0228900 Salix brachista HOM05D006084 ORTHO05D007449 1.6e-27 126.3 211 37.9
AUR62031990 Chenopodium quinoa HOM05D006084 ORTHO05D007449 2.8e-27 125.6 120 55.8
Nitab4.5_0007141g0020 Nicotiana tabacum HOM05D006084 ORTHO05D007449 1.8e-26 122.9 102 60.8
Solyc02g086780.4 Solanum lycopersicum HOM05D006084 ORTHO05D007449 4.0e-26 121.7 76 78.9
DCAR_011237 Daucus carota HOM05D006084 ORTHO05D007449 6.8e-26 120.9 126 53.2
Cpa.g.c30698.2 Carica papaya HOM05D006084 ORTHO05D007449 8.9e-26 120.6 81 75.3
Ciclev10017692m.g Citrus clementina HOM05D006084 ORTHO05D007449 2.4e-23 112.5 68 77.9
Ca_03224_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 3.2e-23 112.1 69 72.5
Nitab4.5_0006281g0070 Nicotiana tabacum HOM05D006084 ORTHO05D007449 3.5e-22 108.6 69 76.8
CBR_g5628 Chara braunii HOM05D006084 ORTHO05D007449 6.6e-21 104.4 105 48.6
AagrBONN_evm.TU.Sc2ySwM_228.3157 Anthoceros agrestis HOM05D006084 ORTHO05D007449 1.1e-20 103.6 85 52.9
AUR62030334 Chenopodium quinoa HOM05D006084 ORTHO05D007449 5.6e-20 101.3 74 63.5
Os01g0339600 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 6.9e-18 94.4 76 64.5
BraA10t44460Z Brassica rapa HOM05D006084 ORTHO05D007449 2.6e-17 92.4 89 56.2
arahy.Tifrunner.gnm1.ann1.2H702Y Arachis hypogaea HOM05D006084 ORTHO05D007449 7.6e-17 90.9 61 68.9
Cre13.g571000 Chlamydomonas reinhardtii HOM05D006084 ORTHO05D007449 9.9e-17 90.5 117 38.5
MELO3C033557.2 Cucumis melo HOM05D006084 ORTHO05D007449 2.7e-14 82.4 121 43.0
Dinv35076 Davidia involucrata HOM05D006084 ORTHO05D007449 6.2e-11 71.2 45 71.1
MCO07G269 Micromonas commoda HOM05D006084 ORTHO05D007449 1.5e-09 66.6 110 32.7
SEGI_25092 Sequoiadendron giganteum HOM05D006084 ORTHO05D007449 2.6e-09 65.9 64 45.3


User provided reference genes

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