Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 1.4e-110 402.9 198 100.0
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 1.1e-65 253.8 176 76.1
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 3.1e-65 252.3 150 79.3
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 2.9e-63 245.7 176 71.6
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 1.4e-62 243.4 156 76.9
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.2e-61 240.4 181 65.7
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 3.5e-61 238.8 156 75.6
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 7.9e-61 237.7 156 75.0
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.0e-60 237.3 156 74.4
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.3e-60 236.9 155 74.8
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 8.7e-60 234.2 172 68.6
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 8.7e-60 234.2 156 74.4
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 7.4e-59 231.1 167 70.1
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 1.6e-58 229.9 165 69.1
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 2.8e-58 229.2 155 71.0
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 3.7e-58 228.8 159 68.6
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 4.8e-58 228.4 178 68.0
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 6.3e-58 228.0 158 68.4
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 1.1e-57 227.3 176 67.6
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 6.9e-57 224.6 155 69.0
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 9.0e-57 224.2 156 70.5
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 9.0e-57 224.2 173 67.1
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 9.0e-57 224.2 133 82.0
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 1.5e-56 223.4 158 67.7
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 3.4e-56 222.2 135 77.8
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 5.9e-56 221.5 121 84.3
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 7.6e-56 221.1 183 65.0
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.7e-55 219.9 156 69.2
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 1.7e-55 219.9 156 69.2
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 1.7e-55 219.9 147 74.1
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 1.1e-54 217.2 177 65.0
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.4e-54 216.9 177 65.0
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 1.4e-54 216.9 182 63.7
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 1.4e-54 216.9 172 67.4
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 1.4e-54 216.9 162 70.4
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 1.9e-54 216.5 161 70.8
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 5.5e-54 214.9 178 65.7
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 5.5e-54 214.9 158 65.8
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 7.2e-54 214.5 113 88.5
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 7.2e-54 214.5 136 76.5
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 1.2e-53 213.8 146 72.6
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 6.1e-53 211.5 155 67.1
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 7.9e-53 211.1 172 63.4
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 7.9e-53 211.1 123 81.3
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 3.9e-52 208.8 180 59.4
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 5.1e-52 208.4 168 63.7
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 1.9e-51 206.5 167 62.9
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 1.9e-51 206.5 154 67.5
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 1.9e-51 206.5 113 85.8
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 3.3e-51 205.7 121 81.0
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 3.3e-51 205.7 113 85.8
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 7.4e-51 204.5 158 65.8
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 9.7e-51 204.1 131 74.0
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 1.3e-50 203.8 123 78.0
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 2.2e-50 203.0 146 69.9
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.8e-50 202.6 146 69.9
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 3.7e-50 202.2 113 80.5
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 3.7e-50 202.2 113 81.4
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 3.7e-50 202.2 168 63.1
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 4.8e-50 201.8 171 62.6
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 8.2e-50 201.1 145 69.0
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 1.1e-49 200.7 135 74.1
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 1.8e-49 199.9 113 80.5
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 1.8e-49 199.9 146 68.5
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.8e-49 199.9 123 74.8
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 2.4e-49 199.5 186 55.4
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 3.1e-49 199.1 178 57.9
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 4.1e-49 198.7 133 72.2
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 5.3e-49 198.4 113 80.5
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 5.3e-49 198.4 113 84.1
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 9.0e-49 197.6 113 80.5
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 9.0e-49 197.6 117 76.9
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 9.0e-49 197.6 187 57.2
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 9.0e-49 197.6 121 79.3
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 2.0e-48 196.4 112 80.4
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 2.0e-48 196.4 130 73.8
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 2.6e-48 196.1 117 76.9
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 3.4e-48 195.7 185 56.8
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 7.7e-48 194.5 125 75.2
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 1.0e-47 194.1 113 77.9
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 1.0e-47 194.1 113 77.9
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 1.3e-47 193.7 113 81.4
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 1.3e-47 193.7 113 82.3
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 1.7e-47 193.4 113 77.0
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 2.2e-47 193.0 130 71.5
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 1.9e-46 189.9 117 73.5
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 3.2e-46 189.1 151 66.2
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 4.2e-46 188.7 112 81.2
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 7.2e-46 188.0 114 79.8
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 9.4e-46 187.6 135 71.1
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 1.2e-45 187.2 166 57.8
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 2.0e-43 179.9 112 73.2
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 3.3e-43 179.1 112 72.3
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 1.3e-42 177.2 129 63.6
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 2.2e-42 176.4 113 74.3
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 8.2e-42 174.5 118 72.0
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 8.2e-42 174.5 91 89.0
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 2.0e-40 169.9 111 67.6
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 7.7e-40 167.9 113 65.5
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.7e-39 166.8 137 62.8
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.7e-39 166.8 137 62.8
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 1.7e-39 166.8 91 86.8
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 4.2e-38 162.2 91 82.4
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 1.2e-37 160.6 119 67.2
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 1.2e-37 160.6 91 82.4
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 1.6e-37 160.2 117 69.2
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.0e-36 157.5 108 63.9
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 2.3e-36 156.4 112 67.0
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 1.1e-35 154.1 150 56.0
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 4.4e-35 152.1 105 67.6
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 9.7e-35 151.0 146 55.5
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 3.7e-34 149.1 84 79.8
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 2.4e-33 146.4 112 62.5
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 1.6e-32 143.7 106 65.1
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 4.2e-30 135.6 113 58.4
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 1.8e-28 130.2 69 87.0
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 1.1e-27 127.5 72 79.2
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 2.6e-27 126.3 77 72.7
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 3.3e-27 125.9 72 77.8
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 7.5e-27 124.8 72 77.8
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 9.7e-27 124.4 68 83.8
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.3e-26 124.0 67 83.6
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 8.2e-26 121.3 138 44.2
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 1.1e-25 120.9 69 79.7
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 1.8e-25 120.2 90 65.6
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.8e-25 120.2 90 65.6
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 3.5e-24 115.9 75 68.0
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 7.7e-24 114.8 87 63.2
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 8.5e-23 111.3 112 54.5
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 2.5e-22 109.8 86 62.8
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 2.1e-21 106.7 68 67.6
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 8.0e-21 104.8 83 62.7
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 8.8e-20 101.3 61 77.0
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 9.8e-19 97.8 85 52.9
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 2.9e-15 86.3 68 57.4
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 1.8e-12 77.0 41 82.9
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 8.8e-12 74.7 48 72.9
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 1.4e-09 67.4 84 46.4
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 8.6e-07 58.2 34 79.4
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 3.3e-06 56.2 31 80.6


User provided reference genes

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