Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 3877.0 1951 100.0
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2830.4 1952 72.7
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 2732.6 1947 71.0
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 2629.7 1957 68.6
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2452.6 1957 63.6
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2359.3 1947 60.1
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2355.1 1963 59.4
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2341.6 1946 59.8
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2339.7 1947 59.8
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2338.1 1948 59.6
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2331.6 1953 60.5
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2323.5 2037 59.4
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2322.4 1959 59.2
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2313.1 1964 60.4
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2303.1 1944 58.6
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2271.1 1958 59.6
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2266.5 1961 58.7
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2234.5 1957 58.4
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2224.1 1958 58.0
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2209.1 1958 57.8
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2189.5 1949 57.2
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2186.8 2159 54.0
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2178.7 1961 57.0
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2164.8 1966 56.7
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2145.5 1981 56.7
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2135.5 1944 56.1
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2132.8 1937 57.2
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2120.5 1955 55.9
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2118.6 2137 53.6
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2117.0 1966 56.1
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2116.3 1956 56.2
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2112.4 1963 55.2
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2112.0 1954 55.2
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2094.3 1950 54.5
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2089.3 1939 54.8
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2088.9 1943 55.6
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2087.0 1933 56.7
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2086.2 1954 54.5
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2080.1 1938 54.7
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2075.4 1944 54.4
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2067.7 1939 54.9
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2061.2 1965 53.8
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2053.9 1859 56.9
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2051.2 1941 54.1
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2049.2 1965 53.6
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2036.2 1972 54.0
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2024.6 1962 53.4
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2006.5 2157 50.2
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2006.1 1956 53.7
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 1998.0 1943 54.0
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1998.0 1821 55.6
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 1995.7 1956 53.6
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1989.2 1955 53.4
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1979.1 1939 53.7
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 1974.9 1941 53.3
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1963.7 2237 47.0
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1962.2 1971 52.5
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1930.6 1953 51.9
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 1926.4 1952 51.8
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 1920.2 1953 51.9
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 1918.3 1958 51.6
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1915.6 1804 53.9
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 1910.6 1949 51.4
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1908.3 1958 51.7
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 1907.1 1962 51.7
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 1907.1 1968 51.5
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1906.3 1956 51.7
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1899.4 1958 51.4
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1890.2 1983 50.9
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1888.2 1984 50.9
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1871.7 1989 50.5
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1843.6 1984 48.9
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1820.1 1597 58.2
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1815.8 1948 51.0
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1801.6 1938 49.4
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1771.9 1267 69.5
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1766.1 1991 48.4
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1721.1 1830 50.5
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1515.7 1426 56.0
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1430.6 1177 59.8
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1355.9 1834 41.8
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1348.6 1167 62.4
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1316.2 1265 53.4
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1213.4 1984 37.6
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1184.9 2044 36.3
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1151.3 1077 54.5
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1102.8 2058 34.4
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 2.2e-304 1050.0 974 59.4
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.0e-290 1004.6 1004 52.2
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 6.2e-275 952.2 2133 31.9
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 9.9e-257 891.7 763 58.1
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 2.7e-246 857.1 1000 46.3
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.6e-227 794.7 887 48.6
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.3e-221 774.2 975 43.7
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 5.7e-220 769.6 780 52.8
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 2.0e-209 734.6 1119 39.3
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 1.2e-188 665.6 502 67.3
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 9.5e-167 592.8 541 56.2
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 4.4e-164 583.9 525 57.7
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 4.1e-162 577.4 672 50.0
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 5.1e-152 543.9 522 55.6
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 5.8e-132 477.2 398 59.8
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 3.4e-124 451.4 652 41.9
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.9e-122 445.7 450 49.6
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 3.9e-120 438.0 292 72.6
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 9.7e-119 433.3 432 50.2
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 1.2e-113 416.4 847 32.5
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 7.2e-98 364.0 335 53.1
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.9e-90 339.3 254 63.4
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 3.6e-89 335.1 215 75.3
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 2.5e-82 312.4 329 53.2
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.2e-81 310.1 389 44.2
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 5.2e-64 251.5 231 54.5
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 3.5e-60 238.8 227 54.6
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 8.6e-59 234.2 371 40.2
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 7.8e-52 211.1 194 52.6
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 1.4e-48 200.3 194 50.0
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 3.4e-47 195.7 313 37.1
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 7.5e-47 194.5 293 39.6
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 2.4e-40 172.9 518 26.8
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.9e-37 163.3 166 48.2
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.6e-36 160.2 298 34.2
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 5.3e-32 145.2 148 51.4
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 1.5e-26 127.1 114 54.4
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 5.6e-26 125.2 282 32.6
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 5.6e-26 125.2 95 66.3
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 2.8e-25 122.9 132 45.5
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 2.8e-25 122.9 138 49.3
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 6.2e-25 121.7 222 35.6
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 1.2e-23 117.5 148 43.2
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 4.6e-20 105.5 118 44.9
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.9e-18 100.1 141 41.1
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.9e-18 100.1 291 28.5
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.2e-15 90.9 82 53.7
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 4.5e-15 89.0 99 43.4
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 5.8e-15 88.6 143 40.6
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 6.4e-14 85.1 290 24.8
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 7.1e-13 81.6 75 52.0
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 7.1e-13 81.6 75 52.0
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 9.3e-13 81.3 209 29.7
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.6e-12 80.5 75 50.7
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 1.6e-12 80.5 148 37.2
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 3.9e-11 75.9 136 32.4
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 1.5e-10 73.9 119 33.6
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 1.5e-10 73.9 55 60.0
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 1.5e-10 73.9 204 27.5
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 2.5e-10 73.2 128 31.2
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 3.3e-10 72.8 88 38.6
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 3.1e-08 66.2 59 49.2
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 1.2e-07 64.3 53 49.1
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 2.0e-07 63.5 132 31.8
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 2.0e-07 63.5 132 31.8
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 3.4e-07 62.8 86 43.0
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 3.4e-07 62.8 74 39.2
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 4.5e-07 62.4 126 34.1
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 1.0e-06 61.2 64 51.6
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 1.3e-06 60.8 59 45.8
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 6.5e-06 58.5 55 56.4


User provided reference genes

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