Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 1.1e-173 613.2 318 100.0
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 4.0e-91 339.0 352 54.3
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 3.4e-82 309.3 351 51.0
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 1.9e-77 293.5 318 55.0
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 8.2e-76 288.1 306 53.3
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 8.8e-70 268.1 356 46.1
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 1.7e-65 253.8 319 46.4
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 6.5e-65 251.9 324 44.8
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 6.5e-65 251.9 324 46.0
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 5.5e-64 248.8 328 43.9
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 2.7e-63 246.5 324 44.8
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 3.6e-63 246.1 320 46.9
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 7.4e-61 238.4 310 45.5
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 1.7e-60 237.3 327 43.1
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 1.4e-59 234.2 320 44.1
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 9.1e-59 231.5 310 43.2
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 4.5e-58 229.2 310 42.6
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 5.9e-58 228.8 305 44.6
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 8.5e-57 224.9 318 42.8
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 1.1e-56 224.6 361 40.2
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 9.4e-56 221.5 305 45.6
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 4.7e-55 219.2 304 42.1
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 8.8e-54 214.9 313 42.2
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 2.0e-53 213.8 377 39.3
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 2.2e-52 210.3 310 40.6
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 1.8e-51 207.2 329 38.0
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 2.4e-51 206.8 323 39.6
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 7.0e-51 205.3 314 41.1
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 1.3e-49 201.1 310 40.3
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 2.2e-49 200.3 310 41.0
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 3.8e-49 199.5 317 39.7
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 5.5e-48 195.7 337 39.5
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 7.2e-48 195.3 310 39.0
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 7.2e-48 195.3 293 40.6
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 1.2e-47 194.5 310 39.0
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.0e-46 191.4 313 39.6
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.0e-46 191.4 311 42.4
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 1.0e-46 191.4 224 50.4
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 1.4e-46 191.0 311 42.4
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 1.8e-46 190.7 313 41.2
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.0e-46 189.9 311 39.5
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 3.0e-46 189.9 297 44.4
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 4.0e-46 189.5 333 37.5
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 8.8e-46 188.3 300 39.0
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.5e-45 187.6 313 43.1
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 2.6e-45 186.8 349 38.1
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 1.8e-43 180.6 310 36.5
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 4.1e-43 179.5 336 34.8
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 4.1e-43 179.5 314 36.6
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 1.2e-42 177.9 334 35.6
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 2.7e-42 176.8 307 39.1
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.8e-41 172.9 292 38.7
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 8.5e-41 171.8 318 37.1
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 1.2e-39 167.9 331 34.4
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 2.7e-39 166.8 313 37.7
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 6.1e-39 165.6 306 34.0
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.8e-38 164.1 292 38.0
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 4.0e-38 162.9 294 38.8
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 6.8e-38 162.2 306 33.3
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 8.8e-38 161.8 302 36.1
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 1.5e-37 161.0 306 34.6
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.5e-37 161.0 354 31.6
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 1.5e-37 161.0 300 34.7
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 2.3e-33 147.1 297 35.0
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 8.6e-33 145.2 368 32.3
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 1.5e-32 144.4 296 35.8
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 1.8e-30 137.5 117 59.8
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 8.9e-30 135.2 309 34.0
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 3.4e-29 133.3 298 34.6
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 2.2e-28 130.6 232 39.7
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 8.3e-28 128.6 196 42.3
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 1.1e-27 128.3 311 30.5
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 2.0e-26 124.0 309 30.7
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 2.9e-25 120.2 282 33.3
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 3.9e-25 119.8 293 32.4
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 1.1e-24 118.2 307 30.3
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 2.5e-24 117.1 307 29.0
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 9.5e-24 115.2 307 30.0
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 1.2e-23 114.8 305 29.8
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 1.2e-23 114.8 305 29.8
DCAR_002966 Daucus carota HOM05D006554 ORTHO05D008778 2.1e-23 114.0 226 37.2
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 1.8e-22 110.9 315 29.5
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 6.8e-22 109.0 295 29.5
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 1.5e-21 107.8 97 55.7
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 1.5e-21 107.8 98 56.1
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 2.6e-21 107.1 230 33.0
COL.COLO4_29198 Corchorus olitorius HOM05D006554 ORTHO05D008778 2.2e-20 104.0 207 39.6
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 1.4e-19 101.3 287 32.1
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 1.4e-19 101.3 288 31.9
Atru.chr6.2450 Acer truncatum HOM05D006554 ORTHO05D008778 4.1e-19 99.8 170 40.0
VMungo1383G3169 Vigna mungo HOM05D006554 ORTHO05D008778 2.7e-18 97.1 152 40.1
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 6.0e-18 95.9 293 30.7
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 2.3e-17 94.0 296 28.4
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 3.0e-17 93.6 126 40.5
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 5.0e-17 92.8 128 39.1
Ca_06565_v3 Cicer arietinum L. HOM05D006554 ORTHO05D008778 6.6e-17 92.4 166 38.0
Lj7A603G61 Lonicera japonica HOM05D006554 ORTHO05D008778 6.6e-17 92.4 189 36.5
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 1.1e-16 91.7 246 29.7
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 3.3e-16 90.1 73 58.9
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 1.6e-15 87.8 308 29.9
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 1.6e-15 87.8 113 42.5
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 2.1e-15 87.4 308 30.2
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 2.8e-15 87.0 131 41.2
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 8.0e-15 85.5 226 33.6
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 1.4e-14 84.7 310 29.4
FAN09G3965 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.4e-14 84.7 173 34.1
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 2.3e-14 84.0 297 30.0
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 5.2e-14 82.8 297 30.0
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 5.8e-13 79.3 383 25.3
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 7.5e-13 79.0 295 27.1
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 2.9e-12 77.0 122 32.0
CDE09G1186 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 8.3e-12 75.5 171 33.3
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 1.1e-11 75.1 125 32.8
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 5.4e-11 72.8 112 41.1
Pp3c22_7000 Physcomitrium patens HOM05D000336 ORTHO05D002705 9.2e-11 72.0 161 34.8
PSO210G7616 Papaver somniferum HOM05D006554 ORTHO05D008778 3.5e-10 70.1 105 42.9
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 3.0e-09 67.0 62 53.2
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 6.6e-09 65.9 102 34.3
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 6.6e-09 65.9 62 53.2
Gohir.D10G116100 Gossypium hirsutum HOM05D006554 ORTHO05D008778 6.6e-09 65.9 116 39.7
SalBow3G1252 Salvia bowleyana HOM05D000336 ORTHO05D002705 1.1e-08 65.1 97 34.0
TAR633G1495 Trochodendron aralioides HOM05D000336 ORTHO05D002705 1.5e-08 64.7 92 35.9
Cpa.g.sc130.62 Carica papaya HOM05D006554 ORTHO05D008778 1.9e-08 64.3 111 36.9
Gorai.011G128000 Gossypium raimondii HOM05D006554 ORTHO05D008778 1.9e-08 64.3 116 38.8
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 1.9e-08 64.3 91 36.3
MSTRG.4151 Avicennia marina HOM05D000336 ORTHO05D002705 2.5e-08 63.9 130 30.0
Pp3c18_15420 Physcomitrium patens HOM05D000336 ORTHO05D002705 2.5e-08 63.9 164 32.3
Pp3c21_9250 Physcomitrium patens HOM05D000336 ORTHO05D002705 2.5e-08 63.9 163 30.1
HPP92_009220 Vanilla planifolia HOM05D000336 ORTHO05D002705 2.5e-08 63.9 97 34.0
HPP92_009288 Vanilla planifolia HOM05D000336 ORTHO05D002705 2.5e-08 63.9 97 34.0
Ciclev10015942m.g Citrus clementina HOM05D000336 ORTHO05D002705 5.6e-08 62.8 108 30.6
SEGI_39566 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 7.3e-08 62.4 97 35.1
Pp3c19_8020 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.2e-07 61.6 74 43.2
Lsat_1_v5_gn_1_75080 Lactuca sativa HOM05D000336 ORTHO05D002705 1.6e-07 61.2 92 30.4
MBI02_g34318_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002705 1.6e-07 61.2 92 32.6
Gorai.001G185000 Gossypium raimondii HOM05D004314 ORTHO05D018179 2.8e-07 60.5 106 38.7
Sc03g0007220 Simmondsia chinensis HOM05D006554 ORTHO05D008778 3.6e-07 60.1 280 26.1
Psat4g111960 Pisum sativum HOM05D000336 ORTHO05D002705 4.7e-07 59.7 114 29.8
Nitab4.5_0005460g0050 Nicotiana tabacum HOM05D000336 ORTHO05D002705 6.2e-07 59.3 162 27.8
Peaxi162Scf00108g00148 Petunia axillaris HOM05D000336 ORTHO05D002705 6.2e-07 59.3 92 33.7
CSS0016673 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002705 8.1e-07 58.9 120 30.0
Medtr8g070660 Medicago truncatula HOM05D000336 ORTHO05D002705 8.1e-07 58.9 88 35.2
Cc03_g05840 Coffea canephora HOM05D000336 ORTHO05D002705 1.1e-06 58.5 92 29.3
Manes.03G072850 Manihot esculenta HOM05D000336 ORTHO05D002705 1.1e-06 58.5 90 31.1
Nitab4.5_0000233g0240 Nicotiana tabacum HOM05D000336 ORTHO05D002705 1.1e-06 58.5 162 27.8
Mapoly0042s0064 Marchantia polymorpha HOM05D000336 ORTHO05D000593 1.8e-06 57.8 145 32.4
DCAR_024281 Daucus carota HOM05D000336 ORTHO05D002705 2.3e-06 57.4 89 31.5
arahy.Tifrunner.gnm1.ann1.5H1KXB Arachis hypogaea HOM05D000336 ORTHO05D002705 3.1e-06 57.0 88 33.0
arahy.Tifrunner.gnm1.ann1.D9KKI5 Arachis hypogaea HOM05D000336 ORTHO05D002705 3.1e-06 57.0 88 33.0
Carub.0005s1864 Capsella rubella HOM05D000336 ORTHO05D002705 3.1e-06 57.0 92 31.5
Sopen09g009860 Solanum pennellii HOM05D000336 ORTHO05D002705 3.1e-06 57.0 97 30.9
Zm00001eb204370 Zea mays HOM05D000336 ORTHO05D000593 3.1e-06 57.0 113 31.9
DCAR_015306 Daucus carota HOM05D000336 ORTHO05D002705 4.0e-06 56.6 122 27.0
ECA248G3137 Erigeron canadensis HOM05D000336 ORTHO05D002705 4.0e-06 56.6 92 27.2
HanXRQChr01g0023231 Helianthus annuus HOM05D000336 ORTHO05D002705 5.2e-06 56.2 92 29.3
Lj6C625G11 Lonicera japonica HOM05D000336 ORTHO05D002705 5.2e-06 56.2 92 29.3
Lj6C626G9 Lonicera japonica HOM05D000336 ORTHO05D002705 5.2e-06 56.2 92 29.3
Gohir.A12G051100 Gossypium hirsutum HOM05D000336 ORTHO05D002705 6.8e-06 55.8 88 31.8
Potri.001G073800 Populus trichocarpa HOM05D000336 ORTHO05D002705 6.8e-06 55.8 99 30.3
Migut.F01763 Erythranthe guttata HOM05D000336 ORTHO05D002705 8.9e-06 55.5 92 28.3
Gorai.008G052200 Gossypium raimondii HOM05D000336 ORTHO05D002705 8.9e-06 55.5 141 23.4


User provided reference genes

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