Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 1.1e-193 679.9 350 100.0
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 4.7e-93 345.5 248 70.6
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 2.1e-85 320.1 251 68.5
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 1.1e-84 317.8 254 67.3
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.1e-81 307.8 283 59.0
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 7.1e-81 305.1 283 58.7
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 3.3e-78 296.2 251 63.3
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 9.6e-78 294.7 250 62.4
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 1.6e-77 293.9 250 62.0
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.1e-77 293.5 246 62.2
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 1.1e-76 291.2 245 61.6
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 1.3e-74 284.3 250 61.2
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 1.7e-74 283.9 251 61.0
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.7e-74 283.9 248 60.9
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 2.9e-74 283.1 252 59.5
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 4.9e-74 282.3 253 60.9
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 9.3e-73 278.1 249 59.8
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.2e-72 277.7 247 59.5
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 3.5e-72 276.2 252 60.3
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 4.6e-72 275.8 284 55.6
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 7.9e-72 275.0 258 56.6
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 1.0e-71 274.6 248 59.7
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 1.0e-71 274.6 251 58.6
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 3.0e-71 273.1 257 58.8
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 3.0e-71 273.1 254 58.7
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 5.1e-71 272.3 244 58.6
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.7e-71 271.9 257 58.4
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 8.7e-71 271.6 252 57.9
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.5e-70 270.8 250 58.0
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.5e-70 270.8 249 59.4
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.5e-70 270.8 246 58.5
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.3e-70 269.6 248 59.3
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 4.3e-70 269.2 251 59.0
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.4e-70 268.5 249 59.0
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.6e-69 267.3 245 58.8
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 1.6e-69 267.3 260 55.8
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.6e-69 267.3 221 61.5
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.1e-69 266.9 249 58.6
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 2.1e-69 266.9 239 59.4
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.8e-69 266.5 250 57.2
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 3.7e-69 266.2 250 56.8
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 3.7e-69 266.2 246 58.5
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 8.2e-69 265.0 241 59.3
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 1.1e-68 264.6 259 56.0
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 1.4e-68 264.2 253 58.9
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 1.4e-68 264.2 234 59.0
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 2.4e-68 263.5 252 57.1
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 3.1e-68 263.1 248 58.5
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 3.1e-68 263.1 226 61.9
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 4.0e-68 262.7 232 59.5
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 5.3e-68 262.3 245 57.6
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 6.9e-68 261.9 222 60.8
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 6.9e-68 261.9 263 55.5
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 6.9e-68 261.9 255 58.0
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 6.9e-68 261.9 228 61.4
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 1.5e-67 260.8 246 57.7
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 2.6e-67 260.0 242 59.1
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 4.5e-67 259.2 275 53.8
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 4.5e-67 259.2 247 60.3
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 1.7e-66 257.3 246 56.9
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 1.7e-66 257.3 248 56.0
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 3.8e-66 256.1 240 54.6
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 6.5e-66 255.4 232 58.6
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 2.5e-65 253.4 246 57.3
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 2.5e-65 253.4 252 56.7
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 4.2e-65 252.7 246 57.3
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 4.2e-65 252.7 251 55.4
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 5.5e-65 252.3 253 54.9
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 9.3e-65 251.5 251 56.2
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 9.3e-65 251.5 240 53.3
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 2.7e-64 250.0 237 54.9
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 2.7e-64 250.0 242 57.0
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 3.5e-64 249.6 238 56.3
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 4.6e-64 249.2 247 53.4
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 4.6e-64 249.2 253 56.1
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 4.6e-64 249.2 244 55.3
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 6.0e-64 248.8 243 56.0
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 6.0e-64 248.8 252 56.0
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 6.0e-64 248.8 235 58.7
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 7.9e-64 248.4 235 57.9
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 3.0e-63 246.5 227 60.8
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 3.9e-63 246.1 257 55.3
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 5.1e-63 245.7 253 54.5
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 5.1e-63 245.7 247 55.1
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 5.1e-63 245.7 245 54.3
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 6.7e-63 245.4 242 55.0
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 8.7e-63 245.0 238 58.8
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 2.5e-62 243.4 239 54.4
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.5e-62 243.4 251 53.0
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.3e-62 243.0 257 54.9
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 4.3e-62 242.7 244 55.7
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 4.3e-62 242.7 244 54.9
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 7.4e-62 241.9 247 53.8
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 9.7e-62 241.5 274 51.5
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 3.7e-61 239.6 202 60.9
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 3.7e-61 239.6 246 53.7
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 8.2e-61 238.4 230 56.5
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 5.3e-60 235.7 243 54.3
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 1.2e-59 234.6 228 57.0
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 1.5e-59 234.2 246 54.5
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 1.5e-59 234.2 244 54.1
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.6e-59 233.4 194 63.9
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.6e-59 233.4 241 55.2
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 5.9e-59 232.3 248 51.2
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 7.7e-59 231.9 242 54.1
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 1.3e-58 231.1 228 55.7
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 2.2e-58 230.3 220 56.8
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 2.9e-58 229.9 257 51.0
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 2.9e-58 229.9 220 56.8
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 2.9e-58 229.9 220 56.8
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 5.0e-58 229.2 165 70.9
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.9e-57 227.3 214 58.4
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 1.2e-56 224.6 220 55.9
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 1.2e-56 224.6 220 55.9
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 6.1e-56 222.2 193 62.2
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 1.5e-54 217.6 168 68.5
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 2.0e-54 217.2 265 48.3
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 2.4e-52 210.3 221 55.7
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 3.1e-52 209.9 160 65.6
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 4.5e-51 206.1 230 50.0
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.0e-47 194.9 231 46.8
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 1.7e-45 187.6 172 59.3
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 3.1e-44 183.3 141 66.0
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 2.0e-43 180.6 224 47.8
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 2.0e-43 180.6 161 57.8
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 4.5e-43 179.5 234 43.6
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.9e-42 176.8 248 49.2
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 1.2e-40 171.4 135 63.7
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 3.6e-40 169.9 135 63.0
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 4.7e-40 169.5 121 68.6
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 3.0e-39 166.8 233 46.4
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 4.4e-38 162.9 231 45.0
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.6e-35 154.5 202 49.0
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 6.5e-34 149.1 236 39.0
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 3.6e-32 143.3 234 39.7
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 5.2e-31 139.4 210 40.5
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.3e-29 134.8 120 63.3
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 5.0e-26 122.9 80 70.0
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.5e-25 120.6 123 55.3
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 3.2e-25 120.2 116 54.3
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 3.2e-25 120.2 116 54.3
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 3.2e-25 120.2 116 54.3
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.2e-25 119.0 123 55.3
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 1.6e-24 117.9 122 54.9
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 3.6e-24 116.7 148 48.0
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 2.8e-21 107.1 169 42.6
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.2e-19 101.7 111 45.9
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 5.2e-15 86.3 156 43.6
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 5.7e-14 82.8 189 33.9
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 9.8e-14 82.0 237 31.2
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 2.3e-10 70.9 101 44.6
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 4.3e-09 66.6 103 41.7
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 2.8e-08 63.9 47 66.0
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 6.1e-08 62.8 61 57.4
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 1.2e-06 58.5 140 32.1
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 1.2e-06 58.5 115 35.7
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 2.0e-06 57.8 134 32.8
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 5.8e-06 56.2 143 31.5
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 9.8e-06 55.5 129 33.3
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 9.8e-06 55.5 129 33.3


User provided reference genes

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