Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 7.3e-115 417.2 199 100.0
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 4.3e-75 285.0 178 78.7
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 1.4e-73 280.0 171 74.9
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 4.1e-73 278.5 165 78.8
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 2.1e-69 266.2 175 72.6
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 1.0e-68 263.8 169 74.6
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 1.8e-68 263.1 168 72.0
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 1.1e-67 260.4 190 64.2
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 1.5e-67 260.0 163 75.5
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 2.5e-67 259.2 168 71.4
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 3.3e-67 258.8 187 66.3
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 7.4e-67 257.7 158 73.4
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 9.7e-67 257.3 164 70.7
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 1.3e-66 256.9 168 70.8
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 1.6e-66 256.5 168 70.8
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 2.2e-66 256.1 169 71.6
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 3.7e-66 255.4 168 70.2
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 4.8e-66 255.0 160 71.2
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 1.1e-65 253.8 154 76.0
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 1.8e-65 253.1 166 71.7
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 2.4e-65 252.7 162 70.4
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 2.4e-65 252.7 157 73.9
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 2.4e-65 252.7 169 74.0
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 3.1e-65 252.3 161 69.6
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 3.1e-65 252.3 162 70.4
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 4.1e-65 251.9 169 68.6
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 6.9e-65 251.1 165 71.5
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 6.9e-65 251.1 170 69.4
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 6.9e-65 251.1 163 70.6
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 9.1e-65 250.8 169 69.8
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 1.2e-64 250.4 168 69.6
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 1.5e-64 250.0 166 71.1
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 1.5e-64 250.0 156 74.4
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 2.0e-64 249.6 174 67.2
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 2.6e-64 249.2 164 71.3
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 2.6e-64 249.2 160 71.2
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 2.6e-64 249.2 165 68.5
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 5.9e-64 248.1 161 69.6
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 5.9e-64 248.1 164 70.7
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 5.9e-64 248.1 160 67.5
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 5.9e-64 248.1 158 72.2
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 5.9e-64 248.1 169 70.4
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 7.7e-64 247.7 167 69.5
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 1.3e-63 246.9 168 69.0
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 1.3e-63 246.9 163 70.6
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 2.2e-63 246.1 172 67.4
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 2.2e-63 246.1 160 68.8
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 2.9e-63 245.7 176 67.6
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 3.8e-63 245.4 162 70.4
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 3.8e-63 245.4 165 70.3
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 3.8e-63 245.4 165 70.3
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 5.0e-63 245.0 161 69.6
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 5.0e-63 245.0 167 67.7
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 5.0e-63 245.0 170 67.6
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 6.5e-63 244.6 156 73.7
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 8.5e-63 244.2 172 64.5
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 8.5e-63 244.2 167 68.9
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 1.1e-62 243.8 162 66.0
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 3.2e-62 242.3 155 71.6
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 3.2e-62 242.3 167 68.9
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 4.2e-62 241.9 167 67.1
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 4.2e-62 241.9 161 69.6
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 7.2e-62 241.1 169 68.0
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 9.4e-62 240.7 149 73.8
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 9.4e-62 240.7 165 66.1
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 1.2e-61 240.4 161 70.2
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 1.2e-61 240.4 176 65.9
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 1.6e-61 240.0 159 69.8
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 1.6e-61 240.0 158 70.3
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.6e-61 240.0 165 69.1
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.6e-61 240.0 165 68.5
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 7.9e-61 237.7 148 71.6
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 1.0e-60 237.3 164 68.3
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 1.0e-60 237.3 156 70.5
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 3.0e-60 235.7 169 64.5
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 1.5e-59 233.4 158 68.4
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 2.0e-59 233.0 170 65.3
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 2.0e-59 233.0 206 54.9
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 3.3e-59 232.3 173 60.1
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 3.3e-59 232.3 153 69.3
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 4.4e-59 231.9 152 71.7
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 2.2e-58 229.6 163 65.6
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 3.7e-58 228.8 153 66.0
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 6.3e-58 228.0 155 67.7
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 5.3e-57 224.9 155 63.2
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 6.5e-55 218.0 180 61.7
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 7.2e-54 214.5 160 65.6
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 2.3e-52 209.5 183 57.9
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 2.0e-51 206.5 122 77.0
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 4.4e-51 205.3 152 59.2
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 1.7e-47 193.4 160 61.2
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 5.0e-47 191.8 132 66.7
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 3.2e-46 189.1 125 69.6
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 4.2e-46 188.7 154 62.3
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 1.2e-45 187.2 149 55.7
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 1.6e-45 186.8 132 65.9
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 6.1e-45 184.9 121 66.9
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 3.0e-44 182.6 173 54.3
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 1.8e-41 173.3 160 52.5
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 2.1e-37 159.8 153 56.2
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 2.7e-37 159.5 153 55.6
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 7.0e-33 144.8 92 67.4
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.3e-31 140.6 101 70.3
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 4.2e-30 135.6 92 63.0
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 8.8e-28 127.9 114 55.3
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 1.2e-27 127.5 77 74.0
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 2.0e-24 116.7 71 76.1
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 8.9e-12 74.7 50 64.0
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 2.2e-10 70.1 69 50.7
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 3.7e-10 69.3 41 75.6
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 6.4e-10 68.6 41 78.0
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 8.3e-10 68.2 51 64.7
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 6.0e-08 62.0 43 65.1
TPR.G26213 Trifolium pratense HOM05D006982 ORTHO05D008909 6.6e-07 58.5 46 58.7
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 1.5e-06 57.4 33 72.7


User provided reference genes

Program Settings