Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 2.3e-289 998.4 606 100.0
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 1.4e-172 610.5 606 67.3
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 1.7e-143 513.8 616 58.9
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 2.8e-141 506.5 581 64.4
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 2.3e-135 486.9 591 62.1
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 4.8e-133 479.2 588 58.3
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 1.4e-129 467.6 559 59.9
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 2.5e-121 440.3 542 58.3
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 3.0e-119 433.3 535 58.7
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 4.3e-118 429.5 616 53.1
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 4.3e-118 429.5 433 69.5
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 7.4e-118 428.7 494 65.4
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 9.6e-118 428.3 548 56.4
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 2.8e-117 426.8 608 52.8
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 1.1e-116 424.9 513 60.0
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 2.4e-116 423.7 499 59.7
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 4.1e-116 422.9 509 58.5
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 5.3e-116 422.5 519 59.5
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.2e-115 421.4 509 58.5
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 1.5e-115 421.0 535 57.4
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 2.0e-115 420.6 554 56.3
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 1.0e-114 418.3 466 66.3
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 2.2e-114 417.2 466 65.9
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 3.8e-114 416.4 509 58.0
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 3.8e-114 416.4 583 57.3
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 5.0e-114 416.0 507 58.6
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 1.9e-113 414.1 443 66.1
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 2.5e-113 413.7 615 50.9
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 9.3e-113 411.8 620 48.1
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 1.2e-112 411.4 543 60.2
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.6e-112 411.0 509 57.6
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 1.3e-111 407.9 466 64.8
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 8.7e-111 405.2 537 60.9
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 4.3e-110 402.9 442 65.8
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 9.7e-110 401.7 448 67.6
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 5.3e-108 396.0 458 64.4
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 3.4e-107 393.3 448 67.9
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 7.7e-107 392.1 524 55.0
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 3.8e-106 389.8 475 53.7
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 6.5e-106 389.0 446 61.2
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 1.9e-105 387.5 437 63.8
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 5.5e-105 386.0 487 61.0
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 1.2e-104 384.8 465 59.4
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 1.6e-104 384.4 554 53.6
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 3.6e-104 383.3 491 61.9
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 1.8e-103 380.9 440 65.9
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 3.9e-103 379.8 441 61.0
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 2.0e-102 377.5 525 55.4
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 2.0e-102 377.5 448 59.8
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 2.2e-101 374.0 441 60.5
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 8.2e-101 372.1 516 55.8
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 1.1e-100 371.7 438 59.8
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 4.1e-100 369.8 442 60.0
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 5.9e-99 365.9 380 67.4
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 6.5e-98 362.5 448 66.3
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 7.2e-97 359.0 439 59.5
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 9.4e-97 358.6 438 65.3
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 1.2e-96 358.2 601 39.1
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 2.1e-96 357.5 443 58.2
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 1.4e-95 354.8 442 64.3
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 1.1e-94 351.7 512 58.6
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 1.5e-94 351.3 442 57.5
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 2.0e-94 350.9 529 52.4
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 5.7e-94 349.4 406 67.5
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 5.7e-94 349.4 467 59.3
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 1.7e-93 347.8 485 54.0
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 6.3e-93 345.9 466 55.4
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 4.1e-92 343.2 512 58.2
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 2.0e-91 340.9 442 56.1
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 1.3e-90 338.2 456 54.6
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 1.2e-88 331.6 437 55.8
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 2.1e-88 330.9 471 57.1
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 2.1e-88 330.9 474 60.1
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 3.6e-88 330.1 436 57.3
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 1.4e-87 328.2 433 56.1
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 2.3e-87 327.4 517 57.8
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 5.7e-86 322.8 504 55.4
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 5.7e-86 322.8 580 52.6
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 1.8e-84 317.8 507 54.2
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 3.1e-84 317.0 444 53.2
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 4.1e-84 316.6 502 55.0
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 1.2e-83 315.1 443 58.9
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 2.0e-83 314.3 507 54.0
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 2.2e-82 310.8 423 59.1
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 3.8e-82 310.1 540 50.4
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 1.1e-81 308.5 512 50.6
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 9.8e-78 295.4 507 50.1
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 1.7e-77 294.7 488 53.5
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 1.1e-73 282.0 389 40.6
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 1.1e-73 282.0 389 40.6
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 1.6e-72 278.1 385 59.0
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 1.8e-71 274.6 411 55.2
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 4.1e-68 263.5 508 52.4
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 9.8e-62 242.3 523 45.1
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 9.8e-62 242.3 449 49.2
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 4.1e-52 210.3 226 51.8
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 1.5e-49 201.8 436 46.6
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 4.3e-49 200.3 179 54.2
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 1.2e-48 198.7 369 33.9
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 1.2e-48 198.7 369 33.9
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 2.8e-48 197.6 204 48.0
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 5.8e-46 189.9 181 49.7
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 5.8e-38 163.3 315 33.7
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 3.4e-30 137.5 175 44.6
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 1.3e-10 72.4 110 37.3
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 1.3e-10 72.4 110 37.3
SMO364G0448 Selaginella moellendorffii HOM05D007093 ORTHO05D008910 2.3e-10 71.6 147 31.3
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 2.8e-08 64.7 143 28.7
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 2.8e-08 64.7 143 28.7
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 1.1e-07 62.8 132 29.5
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 1.4e-07 62.4 146 28.1
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 5.3e-07 60.5 146 28.8
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 6.9e-07 60.1 146 27.4
Ciclev10027602m.g Citrus clementina HOM05D000001 ORTHO05D009948 9.0e-07 59.7 154 26.0
PGR142G0989 Punica granatum HOM05D000855 ORTHO05D008530 9.0e-07 59.7 135 31.1
SMO275G0048 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 9.0e-07 59.7 136 27.2
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 1.2e-06 59.3 147 28.6
AUR62034282 Chenopodium quinoa HOM05D007402 ORTHO05D003673 2.0e-06 58.5 164 24.4
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 2.0e-06 58.5 146 27.4
CANSAT78G0097 Cannabis sativa HOM05D008684 ORTHO05D010796 2.6e-06 58.2 159 24.5
Lalb_Chr22g0350751 Lupinus albus HOM05D007335 ORTHO05D009113 3.4e-06 57.8 136 31.6
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 3.4e-06 57.8 147 28.6
Zm00001eb161270 Zea mays HOM05D006156 ORTHO05D007699 3.4e-06 57.8 169 26.6
SEGI_20062 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 4.5e-06 57.4 163 23.9
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 4.5e-06 57.4 133 29.3
AagrBONN_evm.TU.Sc2ySwM_368.547 Anthoceros agrestis HOM05D007093 ORTHO05D008910 5.8e-06 57.0 196 24.0
COL.COLO4_05239 Corchorus olitorius HOM05D000001 ORTHO05D000003 5.8e-06 57.0 160 27.5


User provided reference genes

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