Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 0.0e+00 1456.8 772 100.0
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 0.0e+00 1226.5 780 83.8
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1212.6 779 81.8
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 0.0e+00 1168.7 778 79.0
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1142.5 809 73.9
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1141.3 792 74.9
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1115.9 791 73.1
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1111.3 802 71.9
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1105.5 795 71.9
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1104.7 781 73.0
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 0.0e+00 1102.8 793 71.8
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 0.0e+00 1102.0 793 73.4
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1101.3 802 73.1
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 0.0e+00 1098.2 808 74.4
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1096.6 793 71.9
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1094.7 795 71.4
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 0.0e+00 1094.0 794 71.4
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1090.1 792 71.8
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1089.7 841 68.5
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1087.8 796 71.5
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 0.0e+00 1087.8 777 73.6
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1085.5 791 72.1
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1085.5 786 71.0
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 0.0e+00 1085.5 782 72.4
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1084.7 817 71.6
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1083.9 803 70.4
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1082.4 795 70.8
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1078.5 801 70.3
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1078.2 794 70.8
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1077.8 792 70.6
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1076.6 801 70.8
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 5.3e-312 1074.7 793 71.0
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 5.3e-312 1073.9 795 70.6
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.6e-311 1072.4 775 72.0
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 1.6e-311 1072.4 811 69.5
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 2.6e-311 1071.6 815 69.2
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 2.6e-309 1065.1 793 70.7
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 3.4e-309 1064.7 787 71.4
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 1.3e-308 1062.8 864 65.9
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 8.3e-308 1060.1 799 70.0
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.1e-307 1059.7 787 71.0
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 1.1e-307 1059.7 779 69.4
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 4.1e-307 1057.7 795 68.8
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 4.6e-306 1054.3 803 69.5
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 1.7e-305 1052.4 799 68.6
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.7e-305 1052.4 801 69.9
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 1.5e-304 1049.3 804 68.9
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 2.5e-304 1048.5 782 69.8
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 2.8e-303 1045.0 771 69.9
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 8.1e-303 1043.5 799 68.2
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 8.1e-303 1043.5 780 68.5
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 3.1e-302 1041.6 796 68.0
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 4.0e-302 1041.2 798 68.2
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 4.0e-302 1041.2 824 68.7
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 1.2e-301 1039.6 755 71.8
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 3.4e-301 1038.1 794 68.3
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 7.6e-301 1036.9 801 69.0
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 9.9e-301 1036.6 786 69.3
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 9.9e-301 1036.6 777 69.5
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 1.1e-299 1033.1 794 68.0
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 1.1e-299 1033.1 790 68.7
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 1.9e-299 1032.3 786 69.3
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 2.7e-298 1028.5 790 68.0
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 7.8e-298 1026.9 788 69.0
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 4.3e-296 1021.1 795 67.4
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 7.3e-296 1020.4 785 68.0
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.1e-295 1018.8 800 67.8
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 8.1e-295 1016.9 786 66.7
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 8.1e-295 1016.9 784 68.4
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 2.4e-294 1015.4 793 67.3
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 3.4e-293 1011.5 774 68.1
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 3.4e-293 1011.5 795 66.4
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 9.9e-293 1010.0 790 66.8
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 6.4e-292 1007.3 779 69.6
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 1.9e-291 1005.7 842 64.1
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.9e-291 1005.7 802 66.3
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 3.2e-291 1005.0 803 66.1
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 3.2e-291 1005.0 787 66.6
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 5.4e-291 1004.2 786 66.7
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 5.1e-289 997.7 782 66.5
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.1e-288 996.5 789 67.9
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.5e-288 996.1 761 69.5
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 3.6e-287 991.5 893 61.0
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 6.2e-287 990.7 783 66.2
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 4.0e-286 988.0 780 65.5
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 4.0e-286 988.0 780 65.5
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 4.4e-285 984.6 787 65.8
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 2.7e-282 975.3 784 65.3
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 2.7e-282 975.3 784 65.3
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 3.5e-282 974.9 784 65.2
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 6.6e-281 970.7 798 64.7
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 5.6e-280 967.6 772 65.5
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 3.4e-277 958.4 793 64.8
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 9.3e-275 950.3 774 66.7
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 1.3e-273 946.4 643 74.5
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 2.0e-269 932.6 797 61.9
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.7e-268 929.5 763 65.1
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 6.5e-268 927.5 764 66.9
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 2.1e-266 922.5 763 64.1
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 3.5e-266 921.8 794 63.9
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 7.9e-266 920.6 763 64.5
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 1.3e-265 919.8 793 64.9
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 5.1e-265 917.9 643 72.8
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 7.4e-264 914.1 643 72.5
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 2.0e-261 906.0 803 60.6
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-251 873.6 765 62.5
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.7e-247 858.6 778 59.6
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 3.4e-245 852.0 815 56.8
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 1.7e-244 849.7 810 57.3
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.2e-243 845.1 717 67.4
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.0e-241 840.5 781 57.9
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 4.1e-214 748.8 664 63.4
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 2.8e-210 736.1 630 62.7
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 9.5e-203 711.1 791 49.9
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 1.7e-196 690.3 480 74.4
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.8e-186 656.4 837 46.0
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.8e-186 656.4 837 46.0
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 1.9e-179 633.6 867 43.7
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 6.9e-169 598.6 835 43.1
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.6e-168 596.7 617 54.5
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 1.3e-167 594.3 459 66.7
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 5.1e-164 582.4 434 68.9
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.9e-163 580.5 648 49.8
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 3.2e-158 563.1 830 42.7
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 4.2e-158 562.8 579 56.6
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.8e-148 530.8 532 56.8
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 1.2e-120 438.3 400 59.5
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 4.5e-104 383.3 591 43.7
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 1.4e-97 361.7 602 42.5
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 1.7e-82 311.6 213 79.3
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 2.3e-79 301.2 669 35.7
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 3.6e-77 293.9 766 30.8
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 8.9e-76 289.3 207 70.0
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 2.4e-73 281.2 197 71.1
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 4.1e-73 280.4 197 71.1
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 4.1e-73 280.4 197 71.1
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 2.8e-69 267.7 209 66.0
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.7e-66 258.5 236 58.9
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 5.1e-63 246.9 456 40.1
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.3e-55 222.2 551 33.8
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 3.8e-50 204.1 117 79.5
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 8.7e-39 166.4 777 26.4
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.5e-38 165.6 83 84.3
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.5e-38 165.6 83 84.3
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 7.4e-38 163.3 192 51.6
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.8e-37 161.4 88 79.5
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 2.0e-35 155.2 131 62.6
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 3.9e-31 141.0 146 50.0
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 1.3e-23 115.9 75 77.3
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 3.9e-23 114.4 88 59.1
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.1e-22 112.8 361 27.7
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.4e-20 105.1 130 46.9
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 1.5e-19 102.4 74 62.2
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 1.0e-18 99.8 68 66.2
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.6e-16 91.3 108 48.1
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 6.1e-16 90.5 57 77.2
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 7.9e-16 90.1 111 51.4
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.8e-15 89.0 100 49.0
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 3.0e-15 88.2 113 47.8
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 7.4e-14 83.6 72 59.7
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 7.4e-14 83.6 59 62.7
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 4.1e-12 77.8 52 80.8
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.0e-11 75.5 80 42.5
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 1.0e-10 73.2 52 76.9
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 1.3e-10 72.8 77 50.6
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 2.2e-10 72.0 77 51.9
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 5.0e-10 70.9 51 74.5
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 1.1e-09 69.7 65 61.5
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 1.0e-07 63.2 111 43.2
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 2.3e-07 62.0 52 59.6
Oeu049880.1 Olea europaea HOM05D000526 ORTHO05D000956 4.4e-06 57.8 47 66.0


User provided reference genes

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